RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 VTI1AQ96AJ9 217 aa18.59■□□□□ 0.57
CLK3-211ENST00000563297 TMEM47Q9BQJ4 181 aa18.59■□□□□ 0.57
CLK3-211ENST00000563297 CYP39A1Q9NYL5 469 aa18.59■□□□□ 0.57
CLK3-211ENST00000563297 DDX49Q9Y6V7 483 aaKnown RBP18.59■□□□□ 0.57
CLK3-211ENST00000563297 TRIM6-TRIM34B2RNG4 842 aa18.58■□□□□ 0.56
CLK3-211ENST00000563297 ICAM1P05362 532 aa18.58■□□□□ 0.56
CLK3-211ENST00000563297 TOP1P11387 765 aaKnown RBP18.58■□□□□ 0.56
CLK3-211ENST00000563297 SLC16A2P36021 539 aa18.58■□□□□ 0.56
CLK3-211ENST00000563297 FPGSQ05932 587 aa18.58■□□□□ 0.56
CLK3-211ENST00000563297 AAMPQ13685 434 aa18.58■□□□□ 0.56
CLK3-211ENST00000563297 CCDC96Q2M329 555 aa18.58■□□□□ 0.56
CLK3-211ENST00000563297 RILPL2Q969X0 211 aa18.58■□□□□ 0.56
CLK3-211ENST00000563297 RANBP17Q9H2T7 1088 aaKnown RBP18.58■□□□□ 0.56
CLK3-211ENST00000563297 SEMA6BQ9H3T3 888 aa18.58■□□□□ 0.56
CLK3-211ENST00000563297 TBX21Q9UL17 535 aa18.58■□□□□ 0.56
CLK3-211ENST00000563297 CCPG1Q9ULG6 757 aa18.58■□□□□ 0.56
CLK3-211ENST00000563297 GNEQ9Y223 722 aaKnown RBP18.58■□□□□ 0.56
CLK3-211ENST00000563297 ARVCFO00192 962 aa18.57■□□□□ 0.56
CLK3-211ENST00000563297 TIMP1P01033 207 aa18.57■□□□□ 0.56
CLK3-211ENST00000563297 HAND2P61296 217 aa18.57■□□□□ 0.56
CLK3-211ENST00000563297 BEX3Q00994 111 aa18.57■□□□□ 0.56
CLK3-211ENST00000563297 B4GALNT3Q6L9W6 998 aa18.57■□□□□ 0.56
CLK3-211ENST00000563297 PURBQ96QR8 312 aaKnown RBP18.57■□□□□ 0.56
CLK3-211ENST00000563297 PDGFCQ9NRA1 345 aa18.57■□□□□ 0.56
CLK3-211ENST00000563297 ZMYM6O95789 1325 aa18.56■□□□□ 0.56
CLK3-211ENST00000563297 MROH7Q68CQ1 1323 aa18.56■□□□□ 0.56
CLK3-211ENST00000563297 CCDC171Q6TFL3 1326 aa18.56■□□□□ 0.56
CLK3-211ENST00000563297 A0A0U1RQG5 324 aaPredicted RBP18.56■□□□□ 0.56
CLK3-211ENST00000563297 SYDE2Q5VT97 1194 aa18.56■□□□□ 0.56
CLK3-211ENST00000563297 IQSEC1Q6DN90 963 aa18.56■□□□□ 0.56
CLK3-211ENST00000563297 TAPT1Q6NXT6 567 aa18.56■□□□□ 0.56
CLK3-211ENST00000563297 NSMFQ6X4W1 530 aa18.56■□□□□ 0.56
CLK3-211ENST00000563297 NOL8Q76FK4 1167 aaKnown RBP18.56■□□□□ 0.56
CLK3-211ENST00000563297 RNPC3Q96LT9 517 aaKnown RBP18.56■□□□□ 0.56
CLK3-211ENST00000563297 TTC14Q96N46 770 aa18.56■□□□□ 0.56
CLK3-211ENST00000563297 RWDD1Q9H446 243 aaPredicted RBP18.56■□□□□ 0.56
CLK3-211ENST00000563297 GPCPD1Q9NPB8 672 aa18.56■□□□□ 0.56
CLK3-211ENST00000563297 FRMPD2Q68DX3 1309 aaPredicted RBP18.55■□□□□ 0.56
CLK3-211ENST00000563297 IGHDP01880 384 aa18.55■□□□□ 0.56
CLK3-211ENST00000563297 SMPD1P17405 629 aa18.55■□□□□ 0.56
CLK3-211ENST00000563297 SDSP20132 328 aa18.55■□□□□ 0.56
CLK3-211ENST00000563297 PTGS1P23219 599 aa18.55■□□□□ 0.56
CLK3-211ENST00000563297 BAATQ14032 418 aaPredicted RBP18.55■□□□□ 0.56
CLK3-211ENST00000563297 AKNAD1Q5T1N1 836 aa18.55■□□□□ 0.56
CLK3-211ENST00000563297 TMEM63BQ5T3F8 832 aa18.55■□□□□ 0.56
CLK3-211ENST00000563297 MFSD5Q6N075 450 aa18.55■□□□□ 0.56
CLK3-211ENST00000563297 MFSD6Q6ZSS7 791 aa18.55■□□□□ 0.56
CLK3-211ENST00000563297 EEPD1Q7L9B9 569 aa18.55■□□□□ 0.56
CLK3-211ENST00000563297 PLEKHM2Q8IWE5 1019 aa18.55■□□□□ 0.56
CLK3-211ENST00000563297 MORC4Q8TE76 937 aa18.55■□□□□ 0.56
CLK3-211ENST00000563297 CDX2Q99626 313 aaPredicted RBP18.55■□□□□ 0.56
CLK3-211ENST00000563297 TTYH1Q9H313 450 aaPredicted RBP18.55■□□□□ 0.56
CLK3-211ENST00000563297 OSBPL3Q9H4L5 887 aa18.55■□□□□ 0.56
CLK3-211ENST00000563297 LCTP09848 1927 aa18.55■□□□□ 0.56
CLK3-211ENST00000563297 DYNC1LI2O43237 492 aaPredicted RBP18.54■□□□□ 0.56
CLK3-211ENST00000563297 PDHBP11177 359 aa18.54■□□□□ 0.56
CLK3-211ENST00000563297 PCP11498 1178 aaKnown RBP18.54■□□□□ 0.56
CLK3-211ENST00000563297 CXCL17Q6UXB2 119 aa18.54■□□□□ 0.56
CLK3-211ENST00000563297 TLK2Q86UE8 772 aa18.54■□□□□ 0.56
CLK3-211ENST00000563297 CHD1LQ86WJ1 897 aa18.54■□□□□ 0.56
CLK3-211ENST00000563297 FAM126BQ8IXS8 530 aa18.54■□□□□ 0.56
CLK3-211ENST00000563297 SLC43A3Q8NBI5 491 aa18.54■□□□□ 0.56
CLK3-211ENST00000563297 AP5M1Q9H0R1 490 aa18.54■□□□□ 0.56
CLK3-211ENST00000563297 NFIBO00712 420 aa18.53■□□□□ 0.56
CLK3-211ENST00000563297 CD4P01730 458 aa18.53■□□□□ 0.56
CLK3-211ENST00000563297 MFAP1P55081 439 aaKnown RBP18.53■□□□□ 0.56
CLK3-211ENST00000563297 C16orf59Q7L2K0 433 aa18.53■□□□□ 0.56
CLK3-211ENST00000563297 TBC1D10CQ8IV04 446 aa18.53■□□□□ 0.56
CLK3-211ENST00000563297 FBXO16Q8IX29 292 aaPredicted RBP18.53■□□□□ 0.56
CLK3-211ENST00000563297 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.53■□□□□ 0.562e-8■■■□□ 17.3
CLK3-211ENST00000563297 VTA1Q9NP79 307 aa18.53■□□□□ 0.56
CLK3-211ENST00000563297 Q9Y3F1 56 aa18.53■□□□□ 0.56
CLK3-211ENST00000563297 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.52■□□□□ 0.56
CLK3-211ENST00000563297 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.52■□□□□ 0.56
CLK3-211ENST00000563297 TLR3O15455 904 aaKnown RBP18.52■□□□□ 0.56
CLK3-211ENST00000563297 CABYRO75952 493 aa18.52■□□□□ 0.56
CLK3-211ENST00000563297 SNHG28P0DPA3 235 aa18.52■□□□□ 0.56
CLK3-211ENST00000563297 NUCB1Q02818 461 aa18.52■□□□□ 0.56
CLK3-211ENST00000563297 ZNF543Q08ER8 600 aa18.52■□□□□ 0.56
CLK3-211ENST00000563297 FSCN1Q16658 493 aaKnown RBP18.52■□□□□ 0.56
CLK3-211ENST00000563297 KIAA1211Q6ZU35 1233 aa18.52■□□□□ 0.56
CLK3-211ENST00000563297 CLEC4DQ8WXI8 215 aa18.52■□□□□ 0.56
CLK3-211ENST00000563297 YTHDC1Q96MU7 727 aaKnown RBP18.52■□□□□ 0.56
CLK3-211ENST00000563297 ADD3Q9UEY8 706 aaKnown RBP18.52■□□□□ 0.56
CLK3-211ENST00000563297 GRIN2DO15399 1336 aa18.51■□□□□ 0.55
CLK3-211ENST00000563297 MYO9BQ13459 2157 aa18.51■□□□□ 0.55
CLK3-211ENST00000563297 CUL9Q8IWT3 2517 aa18.51■□□□□ 0.55
CLK3-211ENST00000563297 ZNF213O14771 459 aa18.51■□□□□ 0.55
CLK3-211ENST00000563297 ALDH5A1P51649 535 aaPredicted RBP18.51■□□□□ 0.55
CLK3-211ENST00000563297 PPIGQ13427 754 aaKnown RBP eCLIP18.51■□□□□ 0.554e-9■■■□□ 15.8
CLK3-211ENST00000563297 ITGA7Q13683 1181 aa18.51■□□□□ 0.55
CLK3-211ENST00000563297 TMEM240Q5SV17 173 aa18.51■□□□□ 0.55
CLK3-211ENST00000563297 ZKSCAN3Q9BRR0 538 aa18.51■□□□□ 0.55
CLK3-211ENST00000563297 PPP1R12CQ9BZL4 782 aa18.51■□□□□ 0.55
CLK3-211ENST00000563297 RNF41Q9H4P4 317 aaPredicted RBP18.51■□□□□ 0.55
CLK3-211ENST00000563297 UNC80Q8N2C7 3258 aa18.5■□□□□ 0.55
CLK3-211ENST00000563297 LRRC37A2A6NM11 1700 aa18.5■□□□□ 0.55
CLK3-211ENST00000563297 LOC102724159A0A0B4J2E5 919 aa18.5■□□□□ 0.55
CLK3-211ENST00000563297 PTPDC1A2A3K4 754 aa18.5■□□□□ 0.55
CLK3-211ENST00000563297 ZEB2O60315 1214 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms