RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 NKX2-4Q9H2Z4 354 aa5.18□□□□□ -1.58
VPS35-203ENST00000562420 CYP26B1Q9NR63 512 aa5.18□□□□□ -1.58
VPS35-203ENST00000562420 GPR55Q9Y2T6 319 aaPredicted RBP5.18□□□□□ -1.58
VPS35-203ENST00000562420 YBX2Q9Y2T7 364 aaKnown RBP5.18□□□□□ -1.58
VPS35-203ENST00000562420 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.17□□□□□ -1.58
VPS35-203ENST00000562420 HRKO00198 91 aa5.17□□□□□ -1.58
VPS35-203ENST00000562420 USP2O75604 605 aaPredicted RBP5.17□□□□□ -1.58
VPS35-203ENST00000562420 IFNGR1P15260 489 aa5.17□□□□□ -1.58
VPS35-203ENST00000562420 HOXC12P31275 282 aa5.17□□□□□ -1.58
VPS35-203ENST00000562420 RTP1P59025 263 aa5.17□□□□□ -1.58
VPS35-203ENST00000562420 ERVFC1P60507 584 aa5.17□□□□□ -1.58
VPS35-203ENST00000562420 HSF5Q4G112 596 aaPredicted RBP5.17□□□□□ -1.58
VPS35-203ENST00000562420 LCE4AQ5TA78 99 aa5.17□□□□□ -1.58
VPS35-203ENST00000562420 GTF2IRD2BQ6EKJ0 949 aa5.17□□□□□ -1.58
VPS35-203ENST00000562420 CEP128Q6ZU80 1094 aa5.17□□□□□ -1.58
VPS35-203ENST00000562420 GTF2IRD2Q86UP8 949 aa5.17□□□□□ -1.58
VPS35-203ENST00000562420 KSR1Q8IVT5 923 aa5.17□□□□□ -1.58
VPS35-203ENST00000562420 NAT16Q8N8M0 369 aa5.17□□□□□ -1.58
VPS35-203ENST00000562420 TMEM52Q8NDY8 209 aa5.17□□□□□ -1.58
VPS35-203ENST00000562420 NLGN2Q8NFZ4 835 aa5.17□□□□□ -1.58
VPS35-203ENST00000562420 UBXN4Q92575 508 aa5.17□□□□□ -1.58
VPS35-203ENST00000562420 SHISA4Q96DD7 197 aa5.17□□□□□ -1.58
VPS35-203ENST00000562420 DRC1Q96MC2 740 aa5.17□□□□□ -1.58
VPS35-203ENST00000562420 MCMBPQ9BTE3 642 aa5.17□□□□□ -1.58
VPS35-203ENST00000562420 ACSL6Q9UKU0 697 aa5.17□□□□□ -1.58
VPS35-203ENST00000562420 TAF6LQ9Y6J9 622 aa5.17□□□□□ -1.58
VPS35-203ENST00000562420 ZNF503-AS2A6NEH8 195 aa5.16□□□□□ -1.58
VPS35-203ENST00000562420 C2orf71A6NGG8 1288 aa5.16□□□□□ -1.58
VPS35-203ENST00000562420 STXBP3O00186 592 aa5.16□□□□□ -1.58
VPS35-203ENST00000562420 KCNH1O95259 989 aa5.16□□□□□ -1.58
VPS35-203ENST00000562420 CPP00450 1065 aa5.16□□□□□ -1.58
VPS35-203ENST00000562420 ITGAVP06756 1048 aa5.16□□□□□ -1.58
VPS35-203ENST00000562420 SEPHS1P49903 392 aa5.16□□□□□ -1.58
VPS35-203ENST00000562420 LAPTM5Q13571 262 aa5.16□□□□□ -1.58
VPS35-203ENST00000562420 SLC14A2Q15849 920 aa5.16□□□□□ -1.58
VPS35-203ENST00000562420 ZNF124Q15973 351 aa5.16□□□□□ -1.58
VPS35-203ENST00000562420 SV2CQ496J9 727 aa5.16□□□□□ -1.58
VPS35-203ENST00000562420 TIGD5Q53EQ6 642 aa5.16□□□□□ -1.58
VPS35-203ENST00000562420 ZNF648Q5T619 568 aaPredicted RBP5.16□□□□□ -1.58
VPS35-203ENST00000562420 E4F1Q66K89 784 aaPredicted RBP5.16□□□□□ -1.58
VPS35-203ENST00000562420 ZPBP2Q6X784 338 aa5.16□□□□□ -1.58
VPS35-203ENST00000562420 MMP19Q99542 508 aa5.16□□□□□ -1.58
VPS35-203ENST00000562420 KRTAP4-5Q9BYR2 181 aa5.16□□□□□ -1.58
VPS35-203ENST00000562420 RNF32Q9H0A6 362 aa5.16□□□□□ -1.58
VPS35-203ENST00000562420 PDPK1O15530 556 aa5.15□□□□□ -1.59
VPS35-203ENST00000562420 PSPNO60542 156 aa5.15□□□□□ -1.59
VPS35-203ENST00000562420 PNLIPP16233 465 aa5.15□□□□□ -1.59
VPS35-203ENST00000562420 RASA3Q14644 834 aa5.15□□□□□ -1.59
VPS35-203ENST00000562420 ACBD5Q5T8D3 534 aaPredicted RBP5.15□□□□□ -1.59
VPS35-203ENST00000562420 LRRC47Q8N1G4 583 aaKnown RBP5.15□□□□□ -1.59
VPS35-203ENST00000562420 BHLHE22Q8NFJ8 381 aaPredicted RBP5.15□□□□□ -1.59
VPS35-203ENST00000562420 INTS4Q96HW7 963 aaKnown RBP5.15□□□□□ -1.59
VPS35-203ENST00000562420 ST7Q9NRC1 585 aa5.15□□□□□ -1.59
VPS35-203ENST00000562420 GPR160Q9UJ42 338 aa5.15□□□□□ -1.59
VPS35-203ENST00000562420 VAMP4O75379 141 aa5.14□□□□□ -1.59
VPS35-203ENST00000562420 PAMP19021 973 aa5.14□□□□□ -1.59
VPS35-203ENST00000562420 L1CAMP32004 1257 aa5.14□□□□□ -1.59
VPS35-203ENST00000562420 GFRA1P56159 465 aa5.14□□□□□ -1.59
VPS35-203ENST00000562420 ERVFRD-1P60508 538 aa5.14□□□□□ -1.59
VPS35-203ENST00000562420 MAP4K2Q12851 820 aa5.14□□□□□ -1.59
VPS35-203ENST00000562420 LONRF2Q1L5Z9 754 aa5.14□□□□□ -1.59
VPS35-203ENST00000562420 IQCEQ6IPM2 695 aa5.14□□□□□ -1.59
VPS35-203ENST00000562420 NPLOC4Q8TAT6 608 aa5.14□□□□□ -1.59
VPS35-203ENST00000562420 BTN2A2Q8WVV5 523 aa5.14□□□□□ -1.59
VPS35-203ENST00000562420 JMJD8Q96S16 334 aa5.14□□□□□ -1.59
VPS35-203ENST00000562420 KRTAP17-1Q9BYP8 105 aa5.14□□□□□ -1.59
VPS35-203ENST00000562420 C19orf44Q9H6X5 657 aa5.14□□□□□ -1.59
VPS35-203ENST00000562420 TNFRSF12AQ9NP84 129 aa5.14□□□□□ -1.59
VPS35-203ENST00000562420 LRP2BPQ9P2M1 347 aa5.14□□□□□ -1.59
VPS35-203ENST00000562420 PPP1R1BQ9UD71 204 aaPredicted RBP5.14□□□□□ -1.59
VPS35-203ENST00000562420 A0A1W2PQU0 124 aa5.13□□□□□ -1.59
VPS35-203ENST00000562420 SRGAP3O43295 1099 aa5.13□□□□□ -1.59
VPS35-203ENST00000562420 PEX10O60683 326 aa5.13□□□□□ -1.59
VPS35-203ENST00000562420 EFEMP2O95967 443 aa5.13□□□□□ -1.59
VPS35-203ENST00000562420 FGFR1P11362 822 aa5.13□□□□□ -1.59
VPS35-203ENST00000562420 TRHRP34981 398 aaPredicted RBP5.13□□□□□ -1.59
VPS35-203ENST00000562420 ARL4AP40617 200 aa5.13□□□□□ -1.59
VPS35-203ENST00000562420 PPP2R2AP63151 447 aa5.13□□□□□ -1.59
VPS35-203ENST00000562420 CYP4F3Q08477 520 aa5.13□□□□□ -1.59
VPS35-203ENST00000562420 SCRN1Q12765 414 aa5.13□□□□□ -1.59
VPS35-203ENST00000562420 KCNAB2Q13303 367 aa5.13□□□□□ -1.59
VPS35-203ENST00000562420 HSP90AA2PQ14568 343 aaPredicted RBP5.13□□□□□ -1.59
VPS35-203ENST00000562420 DPY19L1Q2PZI1 675 aa5.13□□□□□ -1.59
VPS35-203ENST00000562420 ZC3H12BQ5HYM0 836 aaKnown RBP5.13□□□□□ -1.59
VPS35-203ENST00000562420 JAMLQ86YT9 394 aa5.13□□□□□ -1.59
VPS35-203ENST00000562420 PPP1R14AQ96A00 147 aa5.13□□□□□ -1.59
VPS35-203ENST00000562420 C1orf159Q96HA4 380 aa5.13□□□□□ -1.59
VPS35-203ENST00000562420 PLCD4Q9BRC7 762 aa5.13□□□□□ -1.59
VPS35-203ENST00000562420 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.13□□□□□ -1.59
VPS35-203ENST00000562420 NPHP3-ACAD11A0A0J9YXS1 232 aa5.12□□□□□ -1.59
VPS35-203ENST00000562420 ABLIM1O14639 778 aa5.12□□□□□ -1.59
VPS35-203ENST00000562420 THBDP07204 575 aa5.12□□□□□ -1.59
VPS35-203ENST00000562420 TMEM62Q0P6H9 643 aa5.12□□□□□ -1.59
VPS35-203ENST00000562420 SLC35F1Q5T1Q4 408 aa5.12□□□□□ -1.59
VPS35-203ENST00000562420 OLFML2BQ68BL8 750 aa5.12□□□□□ -1.59
VPS35-203ENST00000562420 MPZL3Q6UWV2 235 aa5.12□□□□□ -1.59
VPS35-203ENST00000562420 JMYQ8N9B5 988 aa5.12□□□□□ -1.59
VPS35-203ENST00000562420 FRS2Q8WU20 508 aa5.12□□□□□ -1.59
VPS35-203ENST00000562420 LIN37Q96GY3 246 aaPredicted RBP5.12□□□□□ -1.59
VPS35-203ENST00000562420 DEPDC7Q96QD5 511 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms