RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 RCSD1Q6JBY9 416 aa13.78□□□□□ -0.2
USP3-220ENST00000561381 CCDC174Q6PII3 467 aa13.78□□□□□ -0.2
USP3-220ENST00000561381 FAM133AQ8N9E0 248 aa13.78□□□□□ -0.2
USP3-220ENST00000561381 ABHD16BQ9H3Z7 469 aa13.78□□□□□ -0.2
USP3-220ENST00000561381 ANAPC4Q9UJX5 808 aa13.78□□□□□ -0.2
USP3-220ENST00000561381 PRR12Q9ULL5 1215 aa13.78□□□□□ -0.2
USP3-220ENST00000561381 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.77□□□□□ -0.21
USP3-220ENST00000561381 SOWAHBA6NEL2 793 aa13.77□□□□□ -0.21
USP3-220ENST00000561381 MOXD2PA6NHM9 499 aa13.77□□□□□ -0.21
USP3-220ENST00000561381 DLL1O00548 723 aa13.77□□□□□ -0.21
USP3-220ENST00000561381 ASTN1O14525 1302 aa13.77□□□□□ -0.21
USP3-220ENST00000561381 FGAP02671 866 aa13.77□□□□□ -0.21
USP3-220ENST00000561381 FDX1P10109 184 aa13.77□□□□□ -0.21
USP3-220ENST00000561381 ALAS1P13196 640 aa13.77□□□□□ -0.21
USP3-220ENST00000561381 NOVP48745 357 aa13.77□□□□□ -0.21
USP3-220ENST00000561381 ALX1Q15699 326 aa13.77□□□□□ -0.21
USP3-220ENST00000561381 MUM1L1Q5H9M0 696 aa13.77□□□□□ -0.21
USP3-220ENST00000561381 TTBK2Q6IQ55 1244 aa13.77□□□□□ -0.21
USP3-220ENST00000561381 ANKRD33Q7Z3H0 272 aa13.77□□□□□ -0.21
USP3-220ENST00000561381 ZNF589Q86UQ0 364 aaPredicted RBP13.77□□□□□ -0.21
USP3-220ENST00000561381 NUP133Q8WUM0 1156 aa13.77□□□□□ -0.21
USP3-220ENST00000561381 TRERF1Q96PN7 1200 aa13.77□□□□□ -0.21
USP3-220ENST00000561381 LNPKQ9C0E8 428 aa13.77□□□□□ -0.21
USP3-220ENST00000561381 HELLSQ9NRZ9 838 aa13.77□□□□□ -0.21
USP3-220ENST00000561381 TMEM39AQ9NV64 488 aa13.77□□□□□ -0.21
USP3-220ENST00000561381 CTAGE5O15320 804 aa13.76□□□□□ -0.21
USP3-220ENST00000561381 ORC4O43929 436 aa13.76□□□□□ -0.21
USP3-220ENST00000561381 PLA2G6O60733 806 aa13.76□□□□□ -0.21
USP3-220ENST00000561381 ASGR1P07306 291 aa13.76□□□□□ -0.21
USP3-220ENST00000561381 FGRP09769 529 aa13.76□□□□□ -0.21
USP3-220ENST00000561381 PYGBP11216 843 aa13.76□□□□□ -0.21
USP3-220ENST00000561381 RAG1P15918 1043 aa13.76□□□□□ -0.21
USP3-220ENST00000561381 CST5P28325 142 aaPredicted RBP13.76□□□□□ -0.21
USP3-220ENST00000561381 SLC16A2P36021 539 aa13.76□□□□□ -0.21
USP3-220ENST00000561381 GJA9P57773 515 aa13.76□□□□□ -0.21
USP3-220ENST00000561381 NMIQ13287 307 aaPredicted RBP13.76□□□□□ -0.21
USP3-220ENST00000561381 CCDC96Q2M329 555 aa13.76□□□□□ -0.21
USP3-220ENST00000561381 MCMDC2Q4G0Z9 681 aa13.76□□□□□ -0.21
USP3-220ENST00000561381 RRP12Q5JTH9 1297 aaKnown RBP13.76□□□□□ -0.21
USP3-220ENST00000561381 GNASQ5JWF2 1037 aa13.76□□□□□ -0.21
USP3-220ENST00000561381 ZNF697Q5TEC3 545 aa13.76□□□□□ -0.21
USP3-220ENST00000561381 PURBQ96QR8 312 aaKnown RBP13.76□□□□□ -0.21
USP3-220ENST00000561381 UPF3AQ9H1J1 476 aaKnown RBP13.76□□□□□ -0.21
USP3-220ENST00000561381 TOMM22Q9NS69 142 aa13.76□□□□□ -0.21
USP3-220ENST00000561381 FRMPD2Q68DX3 1309 aaPredicted RBP13.75□□□□□ -0.21
USP3-220ENST00000561381 DCDC2CA8MYV0 355 aa13.75□□□□□ -0.21
USP3-220ENST00000561381 HSPD1P10809 573 aaKnown RBP13.75□□□□□ -0.21
USP3-220ENST00000561381 HAND2P61296 217 aa13.75□□□□□ -0.21
USP3-220ENST00000561381 BEX3Q00994 111 aa13.75□□□□□ -0.21
USP3-220ENST00000561381 TKFCQ3LXA3 575 aa13.75□□□□□ -0.21
USP3-220ENST00000561381 PPP4R3BQ5MIZ7 849 aa13.75□□□□□ -0.21
USP3-220ENST00000561381 GLT1D1Q96MS3 346 aa13.75□□□□□ -0.21
USP3-220ENST00000561381 TOX2Q96NM4 488 aa13.75□□□□□ -0.21
USP3-220ENST00000561381 CYP39A1Q9NYL5 469 aa13.75□□□□□ -0.21
USP3-220ENST00000561381 ELP1O95163 1332 aa13.74□□□□□ -0.21
USP3-220ENST00000561381 CDK7P50613 346 aa13.74□□□□□ -0.21
USP3-220ENST00000561381 TNFAIP2Q03169 654 aa13.74□□□□□ -0.21
USP3-220ENST00000561381 FPGSQ05932 587 aa13.74□□□□□ -0.21
USP3-220ENST00000561381 TMEM63BQ5T3F8 832 aa13.74□□□□□ -0.21
USP3-220ENST00000561381 NOL8Q76FK4 1167 aaKnown RBP13.74□□□□□ -0.21
USP3-220ENST00000561381 EEPD1Q7L9B9 569 aa13.74□□□□□ -0.21
USP3-220ENST00000561381 PCSK9Q8NBP7 692 aaKnown RBP13.74□□□□□ -0.21
USP3-220ENST00000561381 DCAF4Q8WV16 495 aa13.74□□□□□ -0.21
USP3-220ENST00000561381 RILPL2Q969X0 211 aa13.74□□□□□ -0.21
USP3-220ENST00000561381 VTI1AQ96AJ9 217 aa13.74□□□□□ -0.21
USP3-220ENST00000561381 RNPC3Q96LT9 517 aaKnown RBP13.74□□□□□ -0.21
USP3-220ENST00000561381 TMEM47Q9BQJ4 181 aa13.74□□□□□ -0.21
USP3-220ENST00000561381 TTYH1Q9H313 450 aaPredicted RBP13.74□□□□□ -0.21
USP3-220ENST00000561381 SEMA6BQ9H3T3 888 aa13.74□□□□□ -0.21
USP3-220ENST00000561381 SPC25Q9HBM1 224 aa13.74□□□□□ -0.21
USP3-220ENST00000561381 GPCPD1Q9NPB8 672 aa13.74□□□□□ -0.21
USP3-220ENST00000561381 PDGFCQ9NRA1 345 aa13.74□□□□□ -0.21
USP3-220ENST00000561381 TBX21Q9UL17 535 aa13.74□□□□□ -0.21
USP3-220ENST00000561381 CCPG1Q9ULG6 757 aa13.74□□□□□ -0.21
USP3-220ENST00000561381 LCTP09848 1927 aa13.74□□□□□ -0.21
USP3-220ENST00000561381 A0A0U1RQG5 324 aaPredicted RBP13.73□□□□□ -0.21
USP3-220ENST00000561381 ASB14A6NK59 587 aa13.73□□□□□ -0.21
USP3-220ENST00000561381 TRIM6-TRIM34B2RNG4 842 aa13.73□□□□□ -0.21
USP3-220ENST00000561381 ARVCFO00192 962 aa13.73□□□□□ -0.21
USP3-220ENST00000561381 TIMP1P01033 207 aa13.73□□□□□ -0.21
USP3-220ENST00000561381 ICAM1P05362 532 aa13.73□□□□□ -0.21
USP3-220ENST00000561381 SMPD1P17405 629 aa13.73□□□□□ -0.21
USP3-220ENST00000561381 SMAD3P84022 425 aaKnown RBP13.73□□□□□ -0.21
USP3-220ENST00000561381 IER5LQ5T953 404 aa13.73□□□□□ -0.21
USP3-220ENST00000561381 B4GALNT3Q6L9W6 998 aa13.73□□□□□ -0.21
USP3-220ENST00000561381 NSMFQ6X4W1 530 aa13.73□□□□□ -0.21
USP3-220ENST00000561381 TBC1D10CQ8IV04 446 aa13.73□□□□□ -0.21
USP3-220ENST00000561381 FBXO16Q8IX29 292 aaPredicted RBP13.73□□□□□ -0.21
USP3-220ENST00000561381 YTHDC1Q96MU7 727 aaKnown RBP13.73□□□□□ -0.21
USP3-220ENST00000561381 CDX2Q99626 313 aaPredicted RBP13.73□□□□□ -0.21
USP3-220ENST00000561381 RANBP17Q9H2T7 1088 aaKnown RBP13.73□□□□□ -0.21
USP3-220ENST00000561381 GNEQ9Y223 722 aaKnown RBP13.73□□□□□ -0.21
USP3-220ENST00000561381 LRRC37A2A6NM11 1700 aa13.73□□□□□ -0.21
USP3-220ENST00000561381 CCDC171Q6TFL3 1326 aa13.72□□□□□ -0.21
USP3-220ENST00000561381 A0A0C4DFX4 3053 aa13.72□□□□□ -0.21
USP3-220ENST00000561381 NFIBO00712 420 aa13.72□□□□□ -0.21
USP3-220ENST00000561381 IGHDP01880 384 aa13.72□□□□□ -0.21
USP3-220ENST00000561381 PDHBP11177 359 aa13.72□□□□□ -0.21
USP3-220ENST00000561381 TOP1P11387 765 aaKnown RBP13.72□□□□□ -0.21
USP3-220ENST00000561381 NKX3-2P78367 333 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms