RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 MCCP23508 829 aa16.48■□□□□ 0.23
LDLR-213ENST00000560502 STAT2P52630 851 aa16.48■□□□□ 0.23
LDLR-213ENST00000560502 CNTN2Q02246 1040 aa16.48■□□□□ 0.23
LDLR-213ENST00000560502 PDE4BQ07343 736 aa16.48■□□□□ 0.23
LDLR-213ENST00000560502 PPARAQ07869 468 aa16.48■□□□□ 0.23
LDLR-213ENST00000560502 ZMYM1Q5SVZ6 1142 aa16.48■□□□□ 0.23
LDLR-213ENST00000560502 RASIP1Q5U651 963 aa16.48■□□□□ 0.23
LDLR-213ENST00000560502 MFSD5Q6N075 450 aa16.48■□□□□ 0.23
LDLR-213ENST00000560502 FAM126BQ8IXS8 530 aa16.48■□□□□ 0.23
LDLR-213ENST00000560502 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.48■□□□□ 0.231e-42■■□□□ 12.6
LDLR-213ENST00000560502 FSD1Q9BTV5 496 aa16.48■□□□□ 0.23
LDLR-213ENST00000560502 USP26Q9BXU7 913 aa16.48■□□□□ 0.23
LDLR-213ENST00000560502 NACAP1Q9BZK3 213 aa16.48■□□□□ 0.23
LDLR-213ENST00000560502 ACAD9Q9H845 621 aa16.48■□□□□ 0.23
LDLR-213ENST00000560502 A1CFQ9NQ94 594 aaKnown RBP16.48■□□□□ 0.23
LDLR-213ENST00000560502 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.48■□□□□ 0.23
LDLR-213ENST00000560502 ASTN1O14525 1302 aa16.47■□□□□ 0.23
LDLR-213ENST00000560502 A0A0U1RQG5 324 aaPredicted RBP16.47■□□□□ 0.23
LDLR-213ENST00000560502 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.47■□□□□ 0.23
LDLR-213ENST00000560502 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.47■□□□□ 0.23
LDLR-213ENST00000560502 TMEM232C9JQI7 657 aa16.47■□□□□ 0.23
LDLR-213ENST00000560502 ARVCFO00192 962 aa16.47■□□□□ 0.23
LDLR-213ENST00000560502 PLA2G6O60733 806 aa16.47■□□□□ 0.23
LDLR-213ENST00000560502 DNAJB2P25686 324 aa16.47■□□□□ 0.23
LDLR-213ENST00000560502 TFAP4Q01664 338 aa16.47■□□□□ 0.23
LDLR-213ENST00000560502 C16orf59Q7L2K0 433 aa16.47■□□□□ 0.23
LDLR-213ENST00000560502 FAM160B2Q86V87 743 aa16.47■□□□□ 0.23
LDLR-213ENST00000560502 STAG1Q8WVM7 1258 aa16.47■□□□□ 0.23
LDLR-213ENST00000560502 NAPBQ9H115 298 aa16.47■□□□□ 0.23
LDLR-213ENST00000560502 SPC25Q9HBM1 224 aa16.47■□□□□ 0.23
LDLR-213ENST00000560502 HOMER2Q9NSB8 354 aa16.47■□□□□ 0.23
LDLR-213ENST00000560502 RNF146Q9NTX7 359 aa16.47■□□□□ 0.23
LDLR-213ENST00000560502 GBF1Q92538 1859 aa16.47■□□□□ 0.23
LDLR-213ENST00000560502 MYO9BQ13459 2157 aa16.47■□□□□ 0.23
LDLR-213ENST00000560502 PRUNE2Q8WUY3 3088 aa16.47■□□□□ 0.23
LDLR-213ENST00000560502 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.46■□□□□ 0.23
LDLR-213ENST00000560502 SOWAHBA6NEL2 793 aa16.46■□□□□ 0.23
LDLR-213ENST00000560502 PPIGQ13427 754 aaKnown RBP eCLIP16.46■□□□□ 0.231e-17■□□□□ 8.6
LDLR-213ENST00000560502 BECN1Q14457 450 aa16.46■□□□□ 0.23
LDLR-213ENST00000560502 GRIN2CQ14957 1233 aa16.46■□□□□ 0.23
LDLR-213ENST00000560502 TKFCQ3LXA3 575 aa16.46■□□□□ 0.23
LDLR-213ENST00000560502 GNASQ5JWF2 1037 aa16.46■□□□□ 0.23
LDLR-213ENST00000560502 CHURC1Q8WUH1 139 aa16.46■□□□□ 0.23
LDLR-213ENST00000560502 AGBL1Q96MI9 1066 aa16.46■□□□□ 0.23
LDLR-213ENST00000560502 GNEQ9Y223 722 aaKnown RBP16.46■□□□□ 0.23
LDLR-213ENST00000560502 VCANP13611 3396 aa16.46■□□□□ 0.22
LDLR-213ENST00000560502 CD4P01730 458 aa16.45■□□□□ 0.22
LDLR-213ENST00000560502 SLC3A2P08195 630 aaKnown RBP16.45■□□□□ 0.22
LDLR-213ENST00000560502 SLC1A4P43007 532 aa16.45■□□□□ 0.22
LDLR-213ENST00000560502 ANAPC15P60006 121 aa16.45■□□□□ 0.22
LDLR-213ENST00000560502 TMEM240Q5SV17 173 aa16.45■□□□□ 0.22
LDLR-213ENST00000560502 KIAA1211Q6ZU35 1233 aa16.45■□□□□ 0.22
LDLR-213ENST00000560502 SLC43A3Q8NBI5 491 aa16.45■□□□□ 0.22
LDLR-213ENST00000560502 IL17RAQ96F46 866 aa16.45■□□□□ 0.22
LDLR-213ENST00000560502 IL17RBQ9NRM6 502 aa16.45■□□□□ 0.22
LDLR-213ENST00000560502 SPTBN5Q9NRC6 3674 aaKnown RBP16.45■□□□□ 0.22
LDLR-213ENST00000560502 CSF2RAP15509 400 aa16.44■□□□□ 0.22
LDLR-213ENST00000560502 NOVP48745 357 aa16.44■□□□□ 0.22
LDLR-213ENST00000560502 BEX3Q00994 111 aa16.44■□□□□ 0.22
LDLR-213ENST00000560502 TNFAIP2Q03169 654 aa16.44■□□□□ 0.22
LDLR-213ENST00000560502 PPP4R3BQ5MIZ7 849 aa16.44■□□□□ 0.22
LDLR-213ENST00000560502 RASGRP2Q7LDG7 609 aa16.44■□□□□ 0.22
LDLR-213ENST00000560502 TIFAQ96CG3 184 aa16.44■□□□□ 0.22
LDLR-213ENST00000560502 ASB14A6NK59 587 aa16.43■□□□□ 0.22
LDLR-213ENST00000560502 TLR3O15455 904 aaKnown RBP16.43■□□□□ 0.22
LDLR-213ENST00000560502 RCSD1Q6JBY9 416 aa16.43■□□□□ 0.22
LDLR-213ENST00000560502 PSRC1Q6PGN9 363 aaPredicted RBP16.43■□□□□ 0.22
LDLR-213ENST00000560502 CCDC174Q6PII3 467 aa16.43■□□□□ 0.22
LDLR-213ENST00000560502 TLK2Q86UE8 772 aa16.43■□□□□ 0.22
LDLR-213ENST00000560502 TMEM199Q8N511 208 aa16.43■□□□□ 0.22
LDLR-213ENST00000560502 USP38Q8NB14 1042 aa16.43■□□□□ 0.22
LDLR-213ENST00000560502 VTI1AQ96AJ9 217 aa16.43■□□□□ 0.22
LDLR-213ENST00000560502 TRERF1Q96PN7 1200 aa16.43■□□□□ 0.22
LDLR-213ENST00000560502 ZNF576Q9H609 170 aa16.43■□□□□ 0.22
LDLR-213ENST00000560502 ANO2Q9NQ90 1003 aa16.43■□□□□ 0.22
LDLR-213ENST00000560502 PRR12Q9ULL5 1215 aa16.43■□□□□ 0.22
LDLR-213ENST00000560502 NMT2O60551 498 aa16.42■□□□□ 0.22
LDLR-213ENST00000560502 CABYRO75952 493 aa16.42■□□□□ 0.22
LDLR-213ENST00000560502 ALAS1P13196 640 aa16.42■□□□□ 0.22
LDLR-213ENST00000560502 PTGS1P23219 599 aa16.42■□□□□ 0.22
LDLR-213ENST00000560502 PBX2P40425 430 aa16.42■□□□□ 0.22
LDLR-213ENST00000560502 RABEP1Q15276 862 aa16.42■□□□□ 0.22
LDLR-213ENST00000560502 MUM1L1Q5H9M0 696 aa16.42■□□□□ 0.22
LDLR-213ENST00000560502 CWC27Q6UX04 472 aaKnown RBP16.42■□□□□ 0.22
LDLR-213ENST00000560502 CXCL17Q6UXB2 119 aa16.42■□□□□ 0.22
LDLR-213ENST00000560502 CCDC129Q6ZRS4 1044 aa16.42■□□□□ 0.22
LDLR-213ENST00000560502 ZNF365Q70YC5 407 aa16.42■□□□□ 0.22
LDLR-213ENST00000560502 KCTD1Q719H9 257 aa16.42■□□□□ 0.22
LDLR-213ENST00000560502 MORC4Q8TE76 937 aa16.42■□□□□ 0.22
LDLR-213ENST00000560502 PBX4Q9BYU1 374 aa16.42■□□□□ 0.22
LDLR-213ENST00000560502 PPP1R12CQ9BZL4 782 aa16.42■□□□□ 0.22
LDLR-213ENST00000560502 INCENPQ9NQS7 918 aa16.42■□□□□ 0.22
LDLR-213ENST00000560502 CYP39A1Q9NYL5 469 aa16.42■□□□□ 0.22
LDLR-213ENST00000560502 DAXXQ9UER7 740 aaPredicted RBP16.42■□□□□ 0.22
LDLR-213ENST00000560502 ANAPC4Q9UJX5 808 aa16.42■□□□□ 0.22
LDLR-213ENST00000560502 ISY1Q9ULR0 285 aaKnown RBP16.42■□□□□ 0.22
LDLR-213ENST00000560502 STX8Q9UNK0 236 aa16.42■□□□□ 0.22
LDLR-213ENST00000560502 DDX49Q9Y6V7 483 aaKnown RBP16.42■□□□□ 0.22
LDLR-213ENST00000560502 CHD9Q3L8U1 2897 aa16.42■□□□□ 0.22
LDLR-213ENST00000560502 GRIN2DO15399 1336 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms