RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	SORBS3	O60504	671 aa		5.44	□□□□□ -1.54
SPG11-222	ENST00000560435	GREM1	O60565	184 aa		5.44	□□□□□ -1.54
SPG11-222	ENST00000560435	GSTM1	P09488	218 aa		5.44	□□□□□ -1.54
SPG11-222	ENST00000560435	NCAM1	P13591	858 aa		5.44	□□□□□ -1.54
SPG11-222	ENST00000560435	NME1	P15531	152 aa	Known RBP	5.44	□□□□□ -1.54
SPG11-222	ENST00000560435	CORO7	P57737	925 aa		5.44	□□□□□ -1.54
SPG11-222	ENST00000560435	GJA9	P57773	515 aa		5.44	□□□□□ -1.54
SPG11-222	ENST00000560435	PRR5	P85299	388 aa		5.44	□□□□□ -1.54
SPG11-222	ENST00000560435	ERMP1	Q7Z2K6	904 aa		5.44	□□□□□ -1.54
SPG11-222	ENST00000560435	B3GNT8	Q7Z7M8	397 aa		5.44	□□□□□ -1.54
SPG11-222	ENST00000560435	RBM15	Q96T37	977 aa	Known RBP eCLIP	5.44	□□□□□ -1.54
SPG11-222	ENST00000560435	DSCC1	Q9BVC3	393 aa		5.44	□□□□□ -1.54
SPG11-222	ENST00000560435	SRRT	Q9BXP5	876 aa	Known RBP	5.44	□□□□□ -1.54
SPG11-222	ENST00000560435	KRTAP3-1	Q9BYR8	98 aa		5.44	□□□□□ -1.54
SPG11-222	ENST00000560435	SRRD	Q9UH36	339 aa		5.44	□□□□□ -1.54
SPG11-222	ENST00000560435	MEIS3P2	A8K0S8	358 aa		5.43	□□□□□ -1.54
SPG11-222	ENST00000560435	CPZ	Q66K79	652 aa		5.43	□□□□□ -1.54
SPG11-222	ENST00000560435	CWF19L1	Q69YN2	538 aa	Known RBP	5.43	□□□□□ -1.54
SPG11-222	ENST00000560435	TTC9B	Q8N6N2	239 aa		5.43	□□□□□ -1.54
SPG11-222	ENST00000560435	DDX1	Q92499	740 aa	Known RBP	5.43	□□□□□ -1.54
SPG11-222	ENST00000560435	C1QTNF3	Q9BXJ4	246 aa		5.43	□□□□□ -1.54
SPG11-222	ENST00000560435	PATL2	C9JE40	543 aa	Known RBP	5.42	□□□□□ -1.54
SPG11-222	ENST00000560435		F8W031	263 aa	Predicted RBP	5.42	□□□□□ -1.54
SPG11-222	ENST00000560435	FGF10	O15520	208 aa	Predicted RBP	5.42	□□□□□ -1.54
SPG11-222	ENST00000560435	ASGR2	P07307	311 aa		5.42	□□□□□ -1.54
SPG11-222	ENST00000560435	EIF4A3	P38919	411 aa	Known RBP	5.42	□□□□□ -1.54
SPG11-222	ENST00000560435	MC3R	P41968	323 aa		5.42	□□□□□ -1.54
SPG11-222	ENST00000560435	CRK	P46108	304 aa		5.42	□□□□□ -1.54
SPG11-222	ENST00000560435	CLC	Q05315	142 aa		5.42	□□□□□ -1.54
SPG11-222	ENST00000560435	LRRFIP1	Q32MZ4	808 aa	Known RBP	5.42	□□□□□ -1.54
SPG11-222	ENST00000560435	C7orf61	Q8IZ16	206 aa		5.42	□□□□□ -1.54
SPG11-222	ENST00000560435	REXO1	Q8N1G1	1221 aa	Known RBP	5.42	□□□□□ -1.54
SPG11-222	ENST00000560435	SAMD11	Q96NU1	681 aa		5.42	□□□□□ -1.54
SPG11-222	ENST00000560435	VTI1B	Q9UEU0	232 aa		5.42	□□□□□ -1.54
SPG11-222	ENST00000560435		H0Y8X5	98 aa		5.41	□□□□□ -1.54
SPG11-222	ENST00000560435	SUPT5H	O00267	1087 aa	Known RBP	5.41	□□□□□ -1.54
SPG11-222	ENST00000560435	SHOX	O15266	292 aa		5.41	□□□□□ -1.54
SPG11-222	ENST00000560435	GK5	Q6ZS86	529 aa		5.41	□□□□□ -1.54
SPG11-222	ENST00000560435	SLC16A11	Q8NCK7	471 aa		5.41	□□□□□ -1.54
SPG11-222	ENST00000560435	NLGN2	Q8NFZ4	835 aa		5.41	□□□□□ -1.54
SPG11-222	ENST00000560435	ALG3	Q92685	438 aa		5.41	□□□□□ -1.54
SPG11-222	ENST00000560435	MRS2	Q9HD23	443 aa		5.41	□□□□□ -1.54
SPG11-222	ENST00000560435	COPRS	Q9NQ92	184 aa		5.41	□□□□□ -1.54
SPG11-222	ENST00000560435	SUCO	Q9UBS9	1254 aa	Known RBP	5.41	□□□□□ -1.54
SPG11-222	ENST00000560435	DBR1	Q9UK59	544 aa	Known RBP	5.41	□□□□□ -1.54
SPG11-222	ENST00000560435	ZNF20	P17024	532 aa		5.4	□□□□□ -1.54
SPG11-222	ENST00000560435	SARS	P49591	514 aa	Known RBP	5.4	□□□□□ -1.54
SPG11-222	ENST00000560435	FBXO33	Q7Z6M2	555 aa		5.4	□□□□□ -1.54
SPG11-222	ENST00000560435	ZNF761	Q86XN6	746 aa	Predicted RBP	5.4	□□□□□ -1.54
SPG11-222	ENST00000560435	ZNF296	Q8WUU4	475 aa	Predicted RBP	5.4	□□□□□ -1.54
SPG11-222	ENST00000560435	TSPAN17	Q96FV3	270 aa		5.4	□□□□□ -1.54
SPG11-222	ENST00000560435	DHRS1	Q96LJ7	313 aa		5.4	□□□□□ -1.54
SPG11-222	ENST00000560435	SLC9A7	Q96T83	725 aa		5.4	□□□□□ -1.54
SPG11-222	ENST00000560435	NTM	Q9P121	344 aa		5.4	□□□□□ -1.54
SPG11-222	ENST00000560435	GLI4	P10075	376 aa		5.39	□□□□□ -1.55
SPG11-222	ENST00000560435	TACR1	P25103	407 aa		5.39	□□□□□ -1.55
SPG11-222	ENST00000560435	PML	P29590	882 aa		5.39	□□□□□ -1.55
SPG11-222	ENST00000560435	ITGAE	P38570	1179 aa		5.39	□□□□□ -1.55
SPG11-222	ENST00000560435	SEZ6	Q53EL9	994 aa		5.39	□□□□□ -1.55
SPG11-222	ENST00000560435	CCDC144CP	Q8IYA2	1237 aa		5.39	□□□□□ -1.55
SPG11-222	ENST00000560435	CPA5	Q8WXQ8	436 aa		5.39	□□□□□ -1.55
SPG11-222	ENST00000560435	PTCHD1	Q96NR3	888 aa		5.39	□□□□□ -1.55
SPG11-222	ENST00000560435	SORCS2	Q96PQ0	1159 aa		5.39	□□□□□ -1.55
SPG11-222	ENST00000560435		C9IYK1	514 aa		5.38	□□□□□ -1.55
SPG11-222	ENST00000560435	TBC1D8	O95759	1140 aa		5.38	□□□□□ -1.55
SPG11-222	ENST00000560435	PLAT	P00750	562 aa		5.38	□□□□□ -1.55
SPG11-222	ENST00000560435	FSHB	P01225	129 aa		5.38	□□□□□ -1.55
SPG11-222	ENST00000560435	L1CAM	P32004	1257 aa		5.38	□□□□□ -1.55
SPG11-222	ENST00000560435	NOP2	P46087	812 aa	Known RBP	5.38	□□□□□ -1.55
SPG11-222	ENST00000560435	ZNF165	P49910	485 aa		5.38	□□□□□ -1.55
SPG11-222	ENST00000560435	TRIM26	Q12899	539 aa	Predicted RBP	5.38	□□□□□ -1.55
SPG11-222	ENST00000560435	SMARCC2	Q8TAQ2	1214 aa		5.38	□□□□□ -1.55
SPG11-222	ENST00000560435	SMARCC1	Q92922	1105 aa	Predicted RBP	5.38	□□□□□ -1.55
SPG11-222	ENST00000560435	LOXL4	Q96JB6	756 aa		5.38	□□□□□ -1.55
SPG11-222	ENST00000560435	C8orf49	Q96NF6	230 aa		5.38	□□□□□ -1.55
SPG11-222	ENST00000560435	NOX5	Q96PH1	765 aa		5.38	□□□□□ -1.55
SPG11-222	ENST00000560435	SPATA6	Q9NWH7	488 aa	Predicted RBP	5.38	□□□□□ -1.55
SPG11-222	ENST00000560435	MCM4	P33991	863 aa		5.37	□□□□□ -1.55
SPG11-222	ENST00000560435	PMS1	P54277	932 aa	Known RBP	5.37	□□□□□ -1.55
SPG11-222	ENST00000560435	ANKRD39	Q53RE8	183 aa		5.37	□□□□□ -1.55
SPG11-222	ENST00000560435	INTS3	Q68E01	1043 aa	Known RBP	5.37	□□□□□ -1.55
SPG11-222	ENST00000560435	TTLL7	Q6ZT98	887 aa		5.37	□□□□□ -1.55
SPG11-222	ENST00000560435	SND1	Q7KZF4	910 aa	Known RBP eCLIP	5.37	□□□□□ -1.55
SPG11-222	ENST00000560435	CABP7	Q86V35	215 aa		5.37	□□□□□ -1.55
SPG11-222	ENST00000560435	RGS22	Q8NE09	1264 aa		5.37	□□□□□ -1.55
SPG11-222	ENST00000560435	UBP1	Q9NZI7	540 aa		5.37	□□□□□ -1.55
SPG11-222	ENST00000560435	FHOD1	Q9Y613	1164 aa		5.37	□□□□□ -1.55
SPG11-222	ENST00000560435	ZNF445	P59923	1031 aa		5.36	□□□□□ -1.55
SPG11-222	ENST00000560435	CACNB2	Q08289	660 aa	Predicted RBP	5.36	□□□□□ -1.55
SPG11-222	ENST00000560435	APOBR	Q0VD83	1088 aa		5.36	□□□□□ -1.55
SPG11-222	ENST00000560435	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	5.36	□□□□□ -1.55
SPG11-222	ENST00000560435	NOL9	Q5SY16	702 aa	Known RBP	5.36	□□□□□ -1.55
SPG11-222	ENST00000560435	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	5.36	□□□□□ -1.55
SPG11-222	ENST00000560435	USP48	Q86UV5	1035 aa		5.36	□□□□□ -1.55
SPG11-222	ENST00000560435	ADAMTS17	Q8TE56	1095 aa		5.36	□□□□□ -1.55
SPG11-222	ENST00000560435	FCRL3	Q96P31	734 aa	Predicted RBP	5.36	□□□□□ -1.55
SPG11-222	ENST00000560435	BCAS3	Q9H6U6	928 aa		5.36	□□□□□ -1.55
SPG11-222	ENST00000560435	GP6	Q9HCN6	339 aa		5.36	□□□□□ -1.55
SPG11-222	ENST00000560435	ADAMTS1	Q9UHI8	967 aa		5.36	□□□□□ -1.55
SPG11-222	ENST00000560435	OVOL3	O00110	214 aa		5.35	□□□□□ -1.55

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