RNA–Protein interactions for RNA: ENST00000560402.1

SMAD3-214, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-214ENST00000560402 PNMA2Q9UL42 364 aa15.99■□□□□ 0.15
SMAD3-214ENST00000560402 TLR3O15455 904 aaKnown RBP15.98■□□□□ 0.15
SMAD3-214ENST00000560402 CABYRO75952 493 aa15.98■□□□□ 0.15
SMAD3-214ENST00000560402 ICAM1P05362 532 aa15.98■□□□□ 0.15
SMAD3-214ENST00000560402 ITGB8P26012 769 aa15.98■□□□□ 0.15
SMAD3-214ENST00000560402 CDK7P50613 346 aa15.98■□□□□ 0.15
SMAD3-214ENST00000560402 MFAP1P55081 439 aaKnown RBP15.98■□□□□ 0.15
SMAD3-214ENST00000560402 CCDC96Q2M329 555 aa15.98■□□□□ 0.15
SMAD3-214ENST00000560402 GNASQ5JWF2 1037 aa15.98■□□□□ 0.15
SMAD3-214ENST00000560402 SEZ6LQ9BYH1 1024 aa15.98■□□□□ 0.15
SMAD3-214ENST00000560402 RANBP17Q9H2T7 1088 aaKnown RBP15.98■□□□□ 0.15
SMAD3-214ENST00000560402 TOMM22Q9NS69 142 aa15.98■□□□□ 0.15
SMAD3-214ENST00000560402 CYP39A1Q9NYL5 469 aa15.98■□□□□ 0.15
SMAD3-214ENST00000560402 CCPG1Q9ULG6 757 aa15.98■□□□□ 0.15
SMAD3-214ENST00000560402 CCDC171Q6TFL3 1326 aa15.97■□□□□ 0.15
SMAD3-214ENST00000560402 CUL9Q8IWT3 2517 aa15.97■□□□□ 0.15
SMAD3-214ENST00000560402 A0A0D9SFI3 127 aa15.97■□□□□ 0.15
SMAD3-214ENST00000560402 SOWAHBA6NEL2 793 aa15.97■□□□□ 0.15
SMAD3-214ENST00000560402 ARVCFO00192 962 aa15.97■□□□□ 0.15
SMAD3-214ENST00000560402 NMT2O60551 498 aa15.97■□□□□ 0.15
SMAD3-214ENST00000560402 TIMP1P01033 207 aa15.97■□□□□ 0.15
SMAD3-214ENST00000560402 TOP1P11387 765 aaKnown RBP15.97■□□□□ 0.15
SMAD3-214ENST00000560402 ANP32AP39687 249 aaKnown RBP15.97■□□□□ 0.15
SMAD3-214ENST00000560402 TNFAIP2Q03169 654 aa15.97■□□□□ 0.15
SMAD3-214ENST00000560402 PPIGQ13427 754 aaKnown RBP eCLIP15.97■□□□□ 0.152e-8■□□□□ 9.8
SMAD3-214ENST00000560402 MFSD5Q6N075 450 aa15.97■□□□□ 0.15
SMAD3-214ENST00000560402 BTNL9Q6UXG8 535 aa15.97■□□□□ 0.15
SMAD3-214ENST00000560402 TLK2Q86UE8 772 aa15.97■□□□□ 0.15
SMAD3-214ENST00000560402 VTA1Q9NP79 307 aa15.97■□□□□ 0.15
SMAD3-214ENST00000560402 ZEB2O60315 1214 aa15.96■□□□□ 0.15
SMAD3-214ENST00000560402 FGAP02671 866 aa15.96■□□□□ 0.15
SMAD3-214ENST00000560402 HSPD1P10809 573 aaKnown RBP15.96■□□□□ 0.15
SMAD3-214ENST00000560402 PDE4AP27815 886 aa15.96■□□□□ 0.15
SMAD3-214ENST00000560402 SYDE2Q5VT97 1194 aa15.96■□□□□ 0.15
SMAD3-214ENST00000560402 FAM126BQ8IXS8 530 aa15.96■□□□□ 0.15
SMAD3-214ENST00000560402 MORC4Q8TE76 937 aa15.96■□□□□ 0.15
SMAD3-214ENST00000560402 FAM227BQ96M60 508 aa15.96■□□□□ 0.15
SMAD3-214ENST00000560402 FAM161BQ96MY7 647 aa15.96■□□□□ 0.15
SMAD3-214ENST00000560402 RNF41Q9H4P4 317 aaPredicted RBP15.96■□□□□ 0.15
SMAD3-214ENST00000560402 ADD3Q9UEY8 706 aaKnown RBP15.96■□□□□ 0.15
SMAD3-214ENST00000560402 GNEQ9Y223 722 aaKnown RBP15.96■□□□□ 0.15
SMAD3-214ENST00000560402 Q9Y3F1 56 aa15.96■□□□□ 0.15
SMAD3-214ENST00000560402 UNC80Q8N2C7 3258 aa15.96■□□□□ 0.15
SMAD3-214ENST00000560402 A0A0C4DFX4 3053 aa15.96■□□□□ 0.14
SMAD3-214ENST00000560402 CTAGE5O15320 804 aa15.95■□□□□ 0.14
SMAD3-214ENST00000560402 EPHB4P54760 987 aa15.95■□□□□ 0.14
SMAD3-214ENST00000560402 MUM1L1Q5H9M0 696 aa15.95■□□□□ 0.14
SMAD3-214ENST00000560402 RRP12Q5JTH9 1297 aaKnown RBP15.95■□□□□ 0.14
SMAD3-214ENST00000560402 IQSEC1Q6DN90 963 aa15.95■□□□□ 0.14
SMAD3-214ENST00000560402 NSMFQ6X4W1 530 aa15.95■□□□□ 0.14
SMAD3-214ENST00000560402 NOL8Q76FK4 1167 aaKnown RBP15.95■□□□□ 0.14
SMAD3-214ENST00000560402 RASGRP2Q7LDG7 609 aa15.95■□□□□ 0.14
SMAD3-214ENST00000560402 VTI1AQ96AJ9 217 aa15.95■□□□□ 0.14
SMAD3-214ENST00000560402 AP5M1Q9H0R1 490 aa15.95■□□□□ 0.14
SMAD3-214ENST00000560402 INCENPQ9NQS7 918 aa15.95■□□□□ 0.14
SMAD3-214ENST00000560402 MTMR7Q9Y216 660 aa15.95■□□□□ 0.14
SMAD3-214ENST00000560402 ASTN1O14525 1302 aa15.94■□□□□ 0.14
SMAD3-214ENST00000560402 WDR19Q8NEZ3 1342 aa15.94■□□□□ 0.14
SMAD3-214ENST00000560402 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.94■□□□□ 0.14
SMAD3-214ENST00000560402 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.94■□□□□ 0.14
SMAD3-214ENST00000560402 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.94■□□□□ 0.14
SMAD3-214ENST00000560402 IRX5P78411 483 aaPredicted RBP15.94■□□□□ 0.14
SMAD3-214ENST00000560402 NMIQ13287 307 aaPredicted RBP15.94■□□□□ 0.14
SMAD3-214ENST00000560402 FSCN1Q16658 493 aaKnown RBP15.94■□□□□ 0.14
SMAD3-214ENST00000560402 PSRC1Q6PGN9 363 aaPredicted RBP15.94■□□□□ 0.14
SMAD3-214ENST00000560402 ZNF589Q86UQ0 364 aaPredicted RBP15.94■□□□□ 0.14
SMAD3-214ENST00000560402 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.94■□□□□ 0.14
SMAD3-214ENST00000560402 SMC5Q8IY18 1101 aa15.94■□□□□ 0.14
SMAD3-214ENST00000560402 TMEM199Q8N511 208 aa15.94■□□□□ 0.14
SMAD3-214ENST00000560402 SLC43A3Q8NBI5 491 aa15.94■□□□□ 0.14
SMAD3-214ENST00000560402 TTC14Q96N46 770 aa15.94■□□□□ 0.14
SMAD3-214ENST00000560402 CDX2Q99626 313 aaPredicted RBP15.94■□□□□ 0.14
SMAD3-214ENST00000560402 TMEM47Q9BQJ4 181 aa15.94■□□□□ 0.14
SMAD3-214ENST00000560402 BACH2Q9BYV9 841 aa15.94■□□□□ 0.14
SMAD3-214ENST00000560402 SEMA6BQ9H3T3 888 aa15.94■□□□□ 0.14
SMAD3-214ENST00000560402 TRIM6-TRIM34B2RNG4 842 aa15.93■□□□□ 0.14
SMAD3-214ENST00000560402 CD4P01730 458 aa15.93■□□□□ 0.14
SMAD3-214ENST00000560402 SNHG28P0DPA3 235 aa15.93■□□□□ 0.14
SMAD3-214ENST00000560402 PDHBP11177 359 aa15.93■□□□□ 0.14
SMAD3-214ENST00000560402 ALDH5A1P51649 535 aaPredicted RBP15.93■□□□□ 0.14
SMAD3-214ENST00000560402 AKNAD1Q5T1N1 836 aa15.93■□□□□ 0.14
SMAD3-214ENST00000560402 MFSD6Q6ZSS7 791 aa15.93■□□□□ 0.14
SMAD3-214ENST00000560402 FBXO16Q8IX29 292 aaPredicted RBP15.93■□□□□ 0.14
SMAD3-214ENST00000560402 CHMP4CQ96CF2 233 aa15.93■□□□□ 0.14
SMAD3-214ENST00000560402 MPHOSPH6Q99547 160 aaKnown RBP15.93■□□□□ 0.14
SMAD3-214ENST00000560402 LNPKQ9C0E8 428 aa15.93■□□□□ 0.14
SMAD3-214ENST00000560402 TTYH1Q9H313 450 aaPredicted RBP15.93■□□□□ 0.14
SMAD3-214ENST00000560402 MYH6P13533 1939 aa15.92■□□□□ 0.14
SMAD3-214ENST00000560402 SMPD1P17405 629 aa15.92■□□□□ 0.14
SMAD3-214ENST00000560402 DNAJB2P25686 324 aa15.92■□□□□ 0.14
SMAD3-214ENST00000560402 SNAP25P60880 206 aa15.92■□□□□ 0.14
SMAD3-214ENST00000560402 BEX3Q00994 111 aa15.92■□□□□ 0.14
SMAD3-214ENST00000560402 ZNF543Q08ER8 600 aa15.92■□□□□ 0.14
SMAD3-214ENST00000560402 CCDC178Q5BJE1 867 aa15.92■□□□□ 0.14
SMAD3-214ENST00000560402 GPATCH4Q5T3I0 446 aaKnown RBP15.92■□□□□ 0.14
SMAD3-214ENST00000560402 TAPT1Q6NXT6 567 aa15.92■□□□□ 0.14
SMAD3-214ENST00000560402 MAFAQ8NHW3 353 aaPredicted RBP15.92■□□□□ 0.14
SMAD3-214ENST00000560402 ESR2Q92731 530 aa15.92■□□□□ 0.14
SMAD3-214ENST00000560402 RILPL2Q969X0 211 aa15.92■□□□□ 0.14
SMAD3-214ENST00000560402 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.92■□□□□ 0.145e-11■□□□□ 10.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms