RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 DDX49Q9Y6V7 483 aaKnown RBP12.83□□□□□ -0.35
USP3-218ENST00000560202 ZBED4O75132 1171 aa12.83□□□□□ -0.36
USP3-218ENST00000560202 ICAM1P05362 532 aa12.83□□□□□ -0.36
USP3-218ENST00000560202 TAL1P17542 331 aaPredicted RBP12.83□□□□□ -0.36
USP3-218ENST00000560202 DSG3P32926 999 aa12.83□□□□□ -0.36
USP3-218ENST00000560202 UBE2HP62256 183 aa12.83□□□□□ -0.36
USP3-218ENST00000560202 COG2Q14746 738 aa12.83□□□□□ -0.36
USP3-218ENST00000560202 SLC39A14Q15043 492 aa12.83□□□□□ -0.36
USP3-218ENST00000560202 PTPAQ15257 358 aa12.83□□□□□ -0.36
USP3-218ENST00000560202 JAKMIP3Q5VZ66 844 aa12.83□□□□□ -0.36
USP3-218ENST00000560202 PROCA1Q8NCQ7 364 aaPredicted RBP12.83□□□□□ -0.36
USP3-218ENST00000560202 KCNG4Q8TDN1 519 aa12.83□□□□□ -0.36
USP3-218ENST00000560202 GPBP1L1Q9HC44 474 aaPredicted RBP12.83□□□□□ -0.36
USP3-218ENST00000560202 TMEM260Q9NX78 707 aa12.83□□□□□ -0.36
USP3-218ENST00000560202 PCDHB6Q9Y5E3 794 aa12.83□□□□□ -0.36
USP3-218ENST00000560202 VWA5AO00534 786 aa12.82□□□□□ -0.36
USP3-218ENST00000560202 SPTLC2O15270 562 aa12.82□□□□□ -0.36
USP3-218ENST00000560202 CLK2P49760 499 aaKnown RBP12.82□□□□□ -0.36
USP3-218ENST00000560202 NONOQ15233 471 aaKnown RBP eCLIP12.82□□□□□ -0.36
USP3-218ENST00000560202 UBE2SQ16763 222 aa12.82□□□□□ -0.36
USP3-218ENST00000560202 TTC38Q5R3I4 469 aa12.82□□□□□ -0.36
USP3-218ENST00000560202 TREML2Q5T2D2 321 aa12.82□□□□□ -0.36
USP3-218ENST00000560202 CST9Q5W186 159 aa12.82□□□□□ -0.36
USP3-218ENST00000560202 GADL1Q6ZQY3 521 aa12.82□□□□□ -0.36
USP3-218ENST00000560202 GPT2Q8TD30 523 aa12.82□□□□□ -0.36
USP3-218ENST00000560202 ATG4CQ96DT6 458 aa12.82□□□□□ -0.36
USP3-218ENST00000560202 PGBD1Q96JS3 809 aa12.82□□□□□ -0.36
USP3-218ENST00000560202 CTDP1Q9Y5B0 961 aaPredicted RBP12.82□□□□□ -0.36
USP3-218ENST00000560202 ZNF536O15090 1300 aa12.82□□□□□ -0.36
USP3-218ENST00000560202 GOLGA6L4A6NEF3 574 aa12.81□□□□□ -0.36
USP3-218ENST00000560202 OPLAHO14841 1288 aa12.81□□□□□ -0.36
USP3-218ENST00000560202 ABCB11O95342 1321 aa12.81□□□□□ -0.36
USP3-218ENST00000560202 MBD3O95983 291 aa12.81□□□□□ -0.36
USP3-218ENST00000560202 GJA5P36382 358 aa12.81□□□□□ -0.36
USP3-218ENST00000560202 ME1P48163 572 aa12.81□□□□□ -0.36
USP3-218ENST00000560202 INF2Q27J81 1249 aa12.81□□□□□ -0.36
USP3-218ENST00000560202 KLHL40Q2TBA0 621 aa12.81□□□□□ -0.36
USP3-218ENST00000560202 TPRNQ4KMQ1 711 aa12.81□□□□□ -0.36
USP3-218ENST00000560202 USP17L6PQ6QN14 398 aa12.81□□□□□ -0.36
USP3-218ENST00000560202 MYPNQ86TC9 1320 aa12.81□□□□□ -0.36
USP3-218ENST00000560202 CPXCR1Q8N123 301 aa12.81□□□□□ -0.36
USP3-218ENST00000560202 AGBL1Q96MI9 1066 aa12.81□□□□□ -0.36
USP3-218ENST00000560202 RAVER2Q9HCJ3 691 aaKnown RBP12.81□□□□□ -0.36
USP3-218ENST00000560202 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.81□□□□□ -0.36
USP3-218ENST00000560202 HOXC10Q9NYD6 342 aa12.81□□□□□ -0.36
USP3-218ENST00000560202 PNMA2Q9UL42 364 aa12.81□□□□□ -0.36
USP3-218ENST00000560202 CCPG1Q9ULG6 757 aa12.81□□□□□ -0.36
USP3-218ENST00000560202 ADAMTS5Q9UNA0 930 aa12.81□□□□□ -0.36
USP3-218ENST00000560202 CEP131Q9UPN4 1083 aa12.81□□□□□ -0.36
USP3-218ENST00000560202 MYH15Q9Y2K3 1946 aa12.81□□□□□ -0.36
USP3-218ENST00000560202 MRPL11Q9Y3B7 192 aaKnown RBP12.81□□□□□ -0.36
USP3-218ENST00000560202 WNT7AO00755 349 aa12.8□□□□□ -0.36
USP3-218ENST00000560202 MEIS2O14770 477 aa12.8□□□□□ -0.36
USP3-218ENST00000560202 PPP6R2O75170 966 aa12.8□□□□□ -0.36
USP3-218ENST00000560202 HOXA7P31268 230 aaPredicted RBP12.8□□□□□ -0.36
USP3-218ENST00000560202 SNAPC2Q13487 334 aa12.8□□□□□ -0.36
USP3-218ENST00000560202 MOGSQ13724 837 aa12.8□□□□□ -0.36
USP3-218ENST00000560202 FASTKD5Q7L8L6 764 aaKnown RBP12.8□□□□□ -0.36
USP3-218ENST00000560202 TEX2Q8IWB9 1127 aa12.8□□□□□ -0.36
USP3-218ENST00000560202 WNK4Q96J92 1243 aa12.8□□□□□ -0.36
USP3-218ENST00000560202 PCDHA7Q9UN72 937 aa12.8□□□□□ -0.36
USP3-218ENST00000560202 TCHHQ07283 1943 aa12.8□□□□□ -0.36
USP3-218ENST00000560202 SPDYE16A6NNV3 312 aaPredicted RBP12.8□□□□□ -0.36
USP3-218ENST00000560202 BMP15O95972 392 aa12.8□□□□□ -0.36
USP3-218ENST00000560202 MARCKSP29966 332 aaPredicted RBP12.8□□□□□ -0.36
USP3-218ENST00000560202 ZNF174Q15697 407 aa12.8□□□□□ -0.36
USP3-218ENST00000560202 MCTP2Q6DN12 878 aa12.8□□□□□ -0.36
USP3-218ENST00000560202 PPP4R3CPQ6ZMV5 832 aa12.8□□□□□ -0.36
USP3-218ENST00000560202 NEK8Q86SG6 692 aa12.8□□□□□ -0.36
USP3-218ENST00000560202 JMYQ8N9B5 988 aa12.8□□□□□ -0.36
USP3-218ENST00000560202 REPS2Q8NFH8 660 aa12.8□□□□□ -0.36
USP3-218ENST00000560202 TBCKQ8TEA7 893 aa12.8□□□□□ -0.36
USP3-218ENST00000560202 AGTPBP1Q9UPW5 1226 aa12.8□□□□□ -0.36
USP3-218ENST00000560202 PIK3CDO00329 1044 aa12.79□□□□□ -0.36
USP3-218ENST00000560202 RRP9O43818 475 aaKnown RBP12.79□□□□□ -0.36
USP3-218ENST00000560202 MCM7P33993 719 aa12.79□□□□□ -0.36
USP3-218ENST00000560202 OAZ1P54368 228 aa12.79□□□□□ -0.36
USP3-218ENST00000560202 AP3B2Q13367 1082 aa12.79□□□□□ -0.36
USP3-218ENST00000560202 ADALQ6DHV7 355 aa12.79□□□□□ -0.36
USP3-218ENST00000560202 MORC2Q9Y6X9 1032 aaPredicted RBP12.79□□□□□ -0.36
USP3-218ENST00000560202 GCOM1H8Y6P7 765 aaPredicted RBP12.78□□□□□ -0.36
USP3-218ENST00000560202 KIF3CO14782 793 aa12.78□□□□□ -0.36
USP3-218ENST00000560202 ATP2A1O14983 1001 aa12.78□□□□□ -0.36
USP3-218ENST00000560202 CFBP00751 764 aa12.78□□□□□ -0.36
USP3-218ENST00000560202 FOSP01100 380 aaPredicted RBP12.78□□□□□ -0.36
USP3-218ENST00000560202 POLR2MP0CAP2 368 aa12.78□□□□□ -0.36
USP3-218ENST00000560202 ALAS1P13196 640 aa12.78□□□□□ -0.36
USP3-218ENST00000560202 HOXA13P31271 388 aaPredicted RBP12.78□□□□□ -0.36
USP3-218ENST00000560202 HUNKP57058 714 aa12.78□□□□□ -0.36
USP3-218ENST00000560202 IRX3P78415 501 aaPredicted RBP12.78□□□□□ -0.36
USP3-218ENST00000560202 TMEM132BQ14DG7 1078 aa12.78□□□□□ -0.36
USP3-218ENST00000560202 LETM2Q2VYF4 491 aa12.78□□□□□ -0.36
USP3-218ENST00000560202 GPAT2Q6NUI2 795 aa12.78□□□□□ -0.36
USP3-218ENST00000560202 CLEC4DQ8WXI8 215 aa12.78□□□□□ -0.36
USP3-218ENST00000560202 TBC1D5Q92609 795 aa12.78□□□□□ -0.36
USP3-218ENST00000560202 ZNF214Q9UL59 606 aaPredicted RBP12.78□□□□□ -0.36
USP3-218ENST00000560202 PASKQ96RG2 1323 aa12.77□□□□□ -0.36
USP3-218ENST00000560202 A0A1W2PQ27 194 aa12.77□□□□□ -0.36
USP3-218ENST00000560202 A0A1W2PQ64 194 aa12.77□□□□□ -0.36
USP3-218ENST00000560202 A0A1W2PQD8 194 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms