RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 PPATQ06203 517 aa20.25■□□□□ 0.83
SNX1-208ENST00000559844 SPP2Q13103 211 aa20.25■□□□□ 0.83
SNX1-208ENST00000559844 DAGLBQ8NCG7 672 aa20.25■□□□□ 0.83
SNX1-208ENST00000559844 FEZ1Q99689 392 aa20.25■□□□□ 0.83
SNX1-208ENST00000559844 TRIM5Q9C035 493 aa20.25■□□□□ 0.83
SNX1-208ENST00000559844 CREBZFQ9NS37 354 aa20.25■□□□□ 0.83
SNX1-208ENST00000559844 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.25■□□□□ 0.83
SNX1-208ENST00000559844 A0A1W2PRG0 241 aa20.25■□□□□ 0.83
SNX1-208ENST00000559844 ZNF157P51786 506 aaPredicted RBP20.25■□□□□ 0.83
SNX1-208ENST00000559844 KANK3Q6NY19 840 aa20.25■□□□□ 0.83
SNX1-208ENST00000559844 LRRC47Q8N1G4 583 aaKnown RBP20.25■□□□□ 0.83
SNX1-208ENST00000559844 ZNF280CQ8ND82 737 aa20.25■□□□□ 0.83
SNX1-208ENST00000559844 ERCC4Q92889 916 aaPredicted RBP20.25■□□□□ 0.83
SNX1-208ENST00000559844 ZNF75DP51815 510 aa20.24■□□□□ 0.83
SNX1-208ENST00000559844 RGMBQ6NW40 437 aa20.24■□□□□ 0.83
SNX1-208ENST00000559844 PIK3AP1Q6ZUJ8 805 aa20.24■□□□□ 0.83
SNX1-208ENST00000559844 PLA2G4DQ86XP0 818 aa20.24■□□□□ 0.83
SNX1-208ENST00000559844 DHX40Q8IX18 779 aaKnown RBP20.24■□□□□ 0.83
SNX1-208ENST00000559844 CCDC12Q8WUD4 166 aaPredicted RBP20.24■□□□□ 0.83
SNX1-208ENST00000559844 CCDC34Q96HJ3 373 aa20.24■□□□□ 0.83
SNX1-208ENST00000559844 WDR18Q9BV38 432 aa20.24■□□□□ 0.83
SNX1-208ENST00000559844 BARHL2Q9NY43 387 aa20.24■□□□□ 0.83
SNX1-208ENST00000559844 AFG3L2Q9Y4W6 797 aa20.24■□□□□ 0.83
SNX1-208ENST00000559844 IRF6O14896 467 aa20.23■□□□□ 0.83
SNX1-208ENST00000559844 MTMR2Q13614 643 aa20.23■□□□□ 0.83
SNX1-208ENST00000559844 ZYXQ15942 572 aaKnown RBP20.23■□□□□ 0.83
SNX1-208ENST00000559844 LONRF3Q496Y0 759 aa20.23■□□□□ 0.83
SNX1-208ENST00000559844 WNK4Q96J92 1243 aa20.23■□□□□ 0.83
SNX1-208ENST00000559844 CSRNP2Q9H175 543 aa20.23■□□□□ 0.83
SNX1-208ENST00000559844 MTMR7Q9Y216 660 aa20.23■□□□□ 0.83
SNX1-208ENST00000559844 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.23■□□□□ 0.83
SNX1-208ENST00000559844 USP17L10C9JJH3 530 aa20.23■□□□□ 0.83
SNX1-208ENST00000559844 CYTH3O43739 400 aa20.23■□□□□ 0.83
SNX1-208ENST00000559844 CDC25BP30305 580 aa20.23■□□□□ 0.83
SNX1-208ENST00000559844 GJA5P36382 358 aa20.23■□□□□ 0.83
SNX1-208ENST00000559844 MKRN3Q13064 507 aaKnown RBP20.23■□□□□ 0.83
SNX1-208ENST00000559844 PPIL2Q13356 520 aa20.23■□□□□ 0.83
SNX1-208ENST00000559844 GPKOWQ92917 476 aaPredicted RBP eCLIP20.23■□□□□ 0.83
SNX1-208ENST00000559844 RRP36Q96EU6 259 aaKnown RBP20.23■□□□□ 0.83
SNX1-208ENST00000559844 SH2D4AQ9H788 454 aa20.23■□□□□ 0.83
SNX1-208ENST00000559844 RAD21O60216 631 aa20.22■□□□□ 0.83
SNX1-208ENST00000559844 TPM4P67936 248 aa20.22■□□□□ 0.83
SNX1-208ENST00000559844 ATP2C1P98194 919 aaPredicted RBP20.22■□□□□ 0.83
SNX1-208ENST00000559844 GRIN1Q05586 938 aa20.22■□□□□ 0.83
SNX1-208ENST00000559844 ZNF174Q15697 407 aa20.22■□□□□ 0.83
SNX1-208ENST00000559844 DPCR1Q3MIW9 517 aa20.22■□□□□ 0.83
SNX1-208ENST00000559844 WWC2Q6AWC2 1192 aa20.22■□□□□ 0.83
SNX1-208ENST00000559844 PAXIP1Q6ZW49 1069 aaPredicted RBP20.22■□□□□ 0.83
SNX1-208ENST00000559844 HEATR3Q7Z4Q2 680 aa20.22■□□□□ 0.83
SNX1-208ENST00000559844 MKL1Q969V6 931 aa20.22■□□□□ 0.83
SNX1-208ENST00000559844 TMX2Q9Y320 296 aa20.22■□□□□ 0.83
SNX1-208ENST00000559844 SMTNL1A8MU46 457 aa20.21■□□□□ 0.83
SNX1-208ENST00000559844 STXBP3O00186 592 aa20.21■□□□□ 0.83
SNX1-208ENST00000559844 SLC35G1Q2M3R5 365 aa20.21■□□□□ 0.83
SNX1-208ENST00000559844 ASPRV1Q53RT3 343 aa20.21■□□□□ 0.83
SNX1-208ENST00000559844 SPECC1Q5M775 1068 aa20.21■□□□□ 0.83
SNX1-208ENST00000559844 RASAL3Q86YV0 1011 aa20.21■□□□□ 0.83
SNX1-208ENST00000559844 AOPEPQ8N6M6 819 aa20.21■□□□□ 0.83
SNX1-208ENST00000559844 hCG_1984214I3L0E3 225 aa20.21■□□□□ 0.83
SNX1-208ENST00000559844 GOLGA8HP0CJ92 632 aa20.21■□□□□ 0.83
SNX1-208ENST00000559844 BACE1P56817 501 aa20.21■□□□□ 0.83
SNX1-208ENST00000559844 PNOCQ13519 176 aa20.21■□□□□ 0.83
SNX1-208ENST00000559844 SPRYD7Q5W111 196 aa20.21■□□□□ 0.83
SNX1-208ENST00000559844 ZNF713Q8N859 430 aaPredicted RBP20.21■□□□□ 0.83
SNX1-208ENST00000559844 HHIPL1Q96JK4 782 aa20.21■□□□□ 0.83
SNX1-208ENST00000559844 KIAA1683Q9H0B3 1180 aa20.21■□□□□ 0.83
SNX1-208ENST00000559844 SEC63Q9UGP8 760 aaKnown RBP20.21■□□□□ 0.83
SNX1-208ENST00000559844 CCDC194A0A1B0GVG4 234 aa20.2■□□□□ 0.82
SNX1-208ENST00000559844 BIN1O00499 593 aa20.2■□□□□ 0.82
SNX1-208ENST00000559844 POLR2DO15514 142 aaKnown RBP20.2■□□□□ 0.82
SNX1-208ENST00000559844 DGKZQ13574 1117 aa20.2■□□□□ 0.82
SNX1-208ENST00000559844 USP17L2Q6R6M4 530 aa20.2■□□□□ 0.82
SNX1-208ENST00000559844 LOC285556D6RIA3 1793 aa20.2■□□□□ 0.82
SNX1-208ENST00000559844 A0A087WWV3 80 aa20.19■□□□□ 0.82
SNX1-208ENST00000559844 M0R2N6 131 aa20.19■□□□□ 0.82
SNX1-208ENST00000559844 ZBTB48P10074 688 aaPredicted RBP20.19■□□□□ 0.82
SNX1-208ENST00000559844 HMGCS2P54868 508 aa20.19■□□□□ 0.82
SNX1-208ENST00000559844 MDM2Q00987 491 aaPredicted RBP20.19■□□□□ 0.82
SNX1-208ENST00000559844 GRM1Q13255 1194 aa20.19■□□□□ 0.82
SNX1-208ENST00000559844 PTGDRQ13258 359 aa20.19■□□□□ 0.82
SNX1-208ENST00000559844 NOM1Q5C9Z4 860 aaKnown RBP20.19■□□□□ 0.82
SNX1-208ENST00000559844 SPICE1Q8N0Z3 855 aa20.19■□□□□ 0.82
SNX1-208ENST00000559844 MRFAP1L1Q96HT8 127 aa20.19■□□□□ 0.82
SNX1-208ENST00000559844 PYM1Q9BRP8 204 aaKnown RBP20.19■□□□□ 0.82
SNX1-208ENST00000559844 GOPCQ9HD26 462 aa20.19■□□□□ 0.82
SNX1-208ENST00000559844 SYNPO2Q9UMS6 1093 aa20.19■□□□□ 0.82
SNX1-208ENST00000559844 KCNH4Q9UQ05 1017 aa20.19■□□□□ 0.82
SNX1-208ENST00000559844 C19orf81C9J6K1 198 aa20.19■□□□□ 0.82
SNX1-208ENST00000559844 SLC10A3P09131 477 aa20.19■□□□□ 0.82
SNX1-208ENST00000559844 PDHBP11177 359 aa20.19■□□□□ 0.82
SNX1-208ENST00000559844 USP14P54578 494 aa20.19■□□□□ 0.82
SNX1-208ENST00000559844 C1QTNF8P60827 252 aa20.19■□□□□ 0.82
SNX1-208ENST00000559844 HTRA3P83110 453 aa20.19■□□□□ 0.82
SNX1-208ENST00000559844 POSTNQ15063 836 aa20.19■□□□□ 0.82
SNX1-208ENST00000559844 ARL6IP4Q66PJ3 421 aaKnown RBP20.19■□□□□ 0.82
SNX1-208ENST00000559844 DRC7Q8IY82 874 aa20.19■□□□□ 0.82
SNX1-208ENST00000559844 SPC24Q8NBT2 197 aa20.19■□□□□ 0.82
SNX1-208ENST00000559844 VCPKMTQ9H867 229 aa20.19■□□□□ 0.82
SNX1-208ENST00000559844 SERTAD1Q9UHV2 236 aa20.19■□□□□ 0.82
SNX1-208ENST00000559844 PCDHA6Q9UN73 950 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms