RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 PRR12Q9ULL5 1215 aa13.78□□□□□ -0.2
USP3-214ENST00000559718 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.77□□□□□ -0.21
USP3-214ENST00000559718 SOWAHBA6NEL2 793 aa13.77□□□□□ -0.21
USP3-214ENST00000559718 MOXD2PA6NHM9 499 aa13.77□□□□□ -0.21
USP3-214ENST00000559718 DLL1O00548 723 aa13.77□□□□□ -0.21
USP3-214ENST00000559718 ASTN1O14525 1302 aa13.77□□□□□ -0.21
USP3-214ENST00000559718 FGAP02671 866 aa13.77□□□□□ -0.21
USP3-214ENST00000559718 FDX1P10109 184 aa13.77□□□□□ -0.21
USP3-214ENST00000559718 ALAS1P13196 640 aa13.77□□□□□ -0.21
USP3-214ENST00000559718 NOVP48745 357 aa13.77□□□□□ -0.21
USP3-214ENST00000559718 ALX1Q15699 326 aa13.77□□□□□ -0.21
USP3-214ENST00000559718 MUM1L1Q5H9M0 696 aa13.77□□□□□ -0.21
USP3-214ENST00000559718 TTBK2Q6IQ55 1244 aa13.77□□□□□ -0.21
USP3-214ENST00000559718 ANKRD33Q7Z3H0 272 aa13.77□□□□□ -0.21
USP3-214ENST00000559718 ZNF589Q86UQ0 364 aaPredicted RBP13.77□□□□□ -0.21
USP3-214ENST00000559718 NUP133Q8WUM0 1156 aa13.77□□□□□ -0.21
USP3-214ENST00000559718 TRERF1Q96PN7 1200 aa13.77□□□□□ -0.21
USP3-214ENST00000559718 LNPKQ9C0E8 428 aa13.77□□□□□ -0.21
USP3-214ENST00000559718 HELLSQ9NRZ9 838 aa13.77□□□□□ -0.21
USP3-214ENST00000559718 TMEM39AQ9NV64 488 aa13.77□□□□□ -0.21
USP3-214ENST00000559718 CTAGE5O15320 804 aa13.76□□□□□ -0.21
USP3-214ENST00000559718 ORC4O43929 436 aa13.76□□□□□ -0.21
USP3-214ENST00000559718 PLA2G6O60733 806 aa13.76□□□□□ -0.21
USP3-214ENST00000559718 ASGR1P07306 291 aa13.76□□□□□ -0.21
USP3-214ENST00000559718 FGRP09769 529 aa13.76□□□□□ -0.21
USP3-214ENST00000559718 PYGBP11216 843 aa13.76□□□□□ -0.21
USP3-214ENST00000559718 RAG1P15918 1043 aa13.76□□□□□ -0.21
USP3-214ENST00000559718 CST5P28325 142 aaPredicted RBP13.76□□□□□ -0.21
USP3-214ENST00000559718 SLC16A2P36021 539 aa13.76□□□□□ -0.21
USP3-214ENST00000559718 GJA9P57773 515 aa13.76□□□□□ -0.21
USP3-214ENST00000559718 NMIQ13287 307 aaPredicted RBP13.76□□□□□ -0.21
USP3-214ENST00000559718 CCDC96Q2M329 555 aa13.76□□□□□ -0.21
USP3-214ENST00000559718 MCMDC2Q4G0Z9 681 aa13.76□□□□□ -0.21
USP3-214ENST00000559718 RRP12Q5JTH9 1297 aaKnown RBP13.76□□□□□ -0.21
USP3-214ENST00000559718 GNASQ5JWF2 1037 aa13.76□□□□□ -0.21
USP3-214ENST00000559718 ZNF697Q5TEC3 545 aa13.76□□□□□ -0.21
USP3-214ENST00000559718 PURBQ96QR8 312 aaKnown RBP13.76□□□□□ -0.21
USP3-214ENST00000559718 UPF3AQ9H1J1 476 aaKnown RBP13.76□□□□□ -0.21
USP3-214ENST00000559718 TOMM22Q9NS69 142 aa13.76□□□□□ -0.21
USP3-214ENST00000559718 FRMPD2Q68DX3 1309 aaPredicted RBP13.75□□□□□ -0.21
USP3-214ENST00000559718 DCDC2CA8MYV0 355 aa13.75□□□□□ -0.21
USP3-214ENST00000559718 HSPD1P10809 573 aaKnown RBP13.75□□□□□ -0.21
USP3-214ENST00000559718 HAND2P61296 217 aa13.75□□□□□ -0.21
USP3-214ENST00000559718 BEX3Q00994 111 aa13.75□□□□□ -0.21
USP3-214ENST00000559718 TKFCQ3LXA3 575 aa13.75□□□□□ -0.21
USP3-214ENST00000559718 PPP4R3BQ5MIZ7 849 aa13.75□□□□□ -0.21
USP3-214ENST00000559718 GLT1D1Q96MS3 346 aa13.75□□□□□ -0.21
USP3-214ENST00000559718 TOX2Q96NM4 488 aa13.75□□□□□ -0.21
USP3-214ENST00000559718 CYP39A1Q9NYL5 469 aa13.75□□□□□ -0.21
USP3-214ENST00000559718 ELP1O95163 1332 aa13.74□□□□□ -0.21
USP3-214ENST00000559718 CDK7P50613 346 aa13.74□□□□□ -0.21
USP3-214ENST00000559718 TNFAIP2Q03169 654 aa13.74□□□□□ -0.21
USP3-214ENST00000559718 FPGSQ05932 587 aa13.74□□□□□ -0.21
USP3-214ENST00000559718 TMEM63BQ5T3F8 832 aa13.74□□□□□ -0.21
USP3-214ENST00000559718 NOL8Q76FK4 1167 aaKnown RBP13.74□□□□□ -0.21
USP3-214ENST00000559718 EEPD1Q7L9B9 569 aa13.74□□□□□ -0.21
USP3-214ENST00000559718 PCSK9Q8NBP7 692 aaKnown RBP13.74□□□□□ -0.21
USP3-214ENST00000559718 DCAF4Q8WV16 495 aa13.74□□□□□ -0.21
USP3-214ENST00000559718 RILPL2Q969X0 211 aa13.74□□□□□ -0.21
USP3-214ENST00000559718 VTI1AQ96AJ9 217 aa13.74□□□□□ -0.21
USP3-214ENST00000559718 RNPC3Q96LT9 517 aaKnown RBP13.74□□□□□ -0.21
USP3-214ENST00000559718 TMEM47Q9BQJ4 181 aa13.74□□□□□ -0.21
USP3-214ENST00000559718 TTYH1Q9H313 450 aaPredicted RBP13.74□□□□□ -0.21
USP3-214ENST00000559718 SEMA6BQ9H3T3 888 aa13.74□□□□□ -0.21
USP3-214ENST00000559718 SPC25Q9HBM1 224 aa13.74□□□□□ -0.21
USP3-214ENST00000559718 GPCPD1Q9NPB8 672 aa13.74□□□□□ -0.21
USP3-214ENST00000559718 PDGFCQ9NRA1 345 aa13.74□□□□□ -0.21
USP3-214ENST00000559718 TBX21Q9UL17 535 aa13.74□□□□□ -0.21
USP3-214ENST00000559718 CCPG1Q9ULG6 757 aa13.74□□□□□ -0.21
USP3-214ENST00000559718 LCTP09848 1927 aa13.74□□□□□ -0.21
USP3-214ENST00000559718 A0A0U1RQG5 324 aaPredicted RBP13.73□□□□□ -0.21
USP3-214ENST00000559718 ASB14A6NK59 587 aa13.73□□□□□ -0.21
USP3-214ENST00000559718 TRIM6-TRIM34B2RNG4 842 aa13.73□□□□□ -0.21
USP3-214ENST00000559718 ARVCFO00192 962 aa13.73□□□□□ -0.21
USP3-214ENST00000559718 TIMP1P01033 207 aa13.73□□□□□ -0.21
USP3-214ENST00000559718 ICAM1P05362 532 aa13.73□□□□□ -0.21
USP3-214ENST00000559718 SMPD1P17405 629 aa13.73□□□□□ -0.21
USP3-214ENST00000559718 SMAD3P84022 425 aaKnown RBP13.73□□□□□ -0.21
USP3-214ENST00000559718 B4GALNT3Q6L9W6 998 aa13.73□□□□□ -0.21
USP3-214ENST00000559718 NSMFQ6X4W1 530 aa13.73□□□□□ -0.21
USP3-214ENST00000559718 TBC1D10CQ8IV04 446 aa13.73□□□□□ -0.21
USP3-214ENST00000559718 FBXO16Q8IX29 292 aaPredicted RBP13.73□□□□□ -0.21
USP3-214ENST00000559718 YTHDC1Q96MU7 727 aaKnown RBP13.73□□□□□ -0.21
USP3-214ENST00000559718 CDX2Q99626 313 aaPredicted RBP13.73□□□□□ -0.21
USP3-214ENST00000559718 RANBP17Q9H2T7 1088 aaKnown RBP13.73□□□□□ -0.21
USP3-214ENST00000559718 GNEQ9Y223 722 aaKnown RBP13.73□□□□□ -0.21
USP3-214ENST00000559718 LRRC37A2A6NM11 1700 aa13.73□□□□□ -0.21
USP3-214ENST00000559718 CCDC171Q6TFL3 1326 aa13.72□□□□□ -0.21
USP3-214ENST00000559718 A0A0C4DFX4 3053 aa13.72□□□□□ -0.21
USP3-214ENST00000559718 NFIBO00712 420 aa13.72□□□□□ -0.21
USP3-214ENST00000559718 IGHDP01880 384 aa13.72□□□□□ -0.21
USP3-214ENST00000559718 PDHBP11177 359 aa13.72□□□□□ -0.21
USP3-214ENST00000559718 TOP1P11387 765 aaKnown RBP13.72□□□□□ -0.21
USP3-214ENST00000559718 NKX3-2P78367 333 aa13.72□□□□□ -0.21
USP3-214ENST00000559718 BAATQ14032 418 aaPredicted RBP13.72□□□□□ -0.21
USP3-214ENST00000559718 SYDE2Q5VT97 1194 aa13.72□□□□□ -0.21
USP3-214ENST00000559718 TAPT1Q6NXT6 567 aa13.72□□□□□ -0.21
USP3-214ENST00000559718 CXCL17Q6UXB2 119 aa13.72□□□□□ -0.21
USP3-214ENST00000559718 BTNL9Q6UXG8 535 aa13.72□□□□□ -0.21
USP3-214ENST00000559718 TLK2Q86UE8 772 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms