RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 EEF2P13639 858 aaKnown RBP11.97□□□□□ -0.49
CUX1-217ENST00000558836 ADCY7P51828 1080 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 PAK1Q13153 545 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 SEPT2Q15019 361 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 ZNF658Q5TYW1 1059 aaPredicted RBP11.97□□□□□ -0.49
CUX1-217ENST00000558836 CDKAL1Q5VV42 579 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 ADD3Q9UEY8 706 aaKnown RBP11.97□□□□□ -0.49
CUX1-217ENST00000558836 ZNF215Q9UL58 517 aaPredicted RBP11.97□□□□□ -0.49
CUX1-217ENST00000558836 USP17L15C9J2P7 530 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 USP17L13C9JLJ4 530 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 USP17L11C9JVI0 530 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 USP17L18D6R9N7 530 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 USP17L22D6RA61 530 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 USP17L17D6RBQ6 530 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 USP17L19D6RCP7 530 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 USP17L20D6RJB6 530 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 RXRBP28702 533 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 NT5C2P49902 561 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 USP17L24Q0WX57 530 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 KRT31Q15323 416 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 ASPRV1Q53RT3 343 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 ZNF772Q68DY9 489 aaPredicted RBP11.97□□□□□ -0.49
CUX1-217ENST00000558836 USP17L6PQ6QN14 398 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 KIF18AQ8NI77 898 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 ZDHHC15Q96MV8 337 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 DNAI1Q9UI46 699 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 MYH8P13535 1937 aa11.96□□□□□ -0.49
CUX1-217ENST00000558836 A0A0U1RQJ8 604 aa11.96□□□□□ -0.49
CUX1-217ENST00000558836 SOWAHDA6NJG2 315 aa11.96□□□□□ -0.49
CUX1-217ENST00000558836 N4BP3O15049 544 aa11.96□□□□□ -0.49
CUX1-217ENST00000558836 SNHG28P0DPA3 235 aa11.96□□□□□ -0.49
CUX1-217ENST00000558836 FCER1AP12319 257 aa11.96□□□□□ -0.49
CUX1-217ENST00000558836 JAG1P78504 1218 aa11.96□□□□□ -0.49
CUX1-217ENST00000558836 CERKLQ49MI3 558 aaPredicted RBP11.96□□□□□ -0.49
CUX1-217ENST00000558836 LRRN4CLQ8ND94 238 aa11.96□□□□□ -0.49
CUX1-217ENST00000558836 ATRIPQ8WXE1 791 aa11.96□□□□□ -0.49
CUX1-217ENST00000558836 NUDT12Q9BQG2 462 aa11.96□□□□□ -0.49
CUX1-217ENST00000558836 MMTAG2Q9BU76 263 aaKnown RBP11.96□□□□□ -0.49
CUX1-217ENST00000558836 SWAP70Q9UH65 585 aa11.96□□□□□ -0.49
CUX1-217ENST00000558836 SCAF8Q9UPN6 1271 aaKnown RBP11.96□□□□□ -0.49
CUX1-217ENST00000558836 RNF225M0QZC1 329 aaPredicted RBP11.96□□□□□ -0.5
CUX1-217ENST00000558836 FANCGO15287 622 aa11.96□□□□□ -0.5
CUX1-217ENST00000558836 KLRC4O43908 158 aa11.96□□□□□ -0.5
CUX1-217ENST00000558836 CASP14P31944 242 aa11.96□□□□□ -0.5
CUX1-217ENST00000558836 CALCRLQ16602 461 aa11.96□□□□□ -0.5
CUX1-217ENST00000558836 STRIP1Q5VSL9 837 aa11.96□□□□□ -0.5
CUX1-217ENST00000558836 SPICE1Q8N0Z3 855 aa11.96□□□□□ -0.5
CUX1-217ENST00000558836 FLAD1Q8NFF5 587 aa11.96□□□□□ -0.5
CUX1-217ENST00000558836 PRMT6Q96LA8 375 aaPredicted RBP11.96□□□□□ -0.5
CUX1-217ENST00000558836 PSDA5PKW4 1024 aaPredicted RBP11.95□□□□□ -0.5
CUX1-217ENST00000558836 CTIFO43310 598 aaKnown RBP11.95□□□□□ -0.5
CUX1-217ENST00000558836 MYO1BO43795 1136 aa11.95□□□□□ -0.5
CUX1-217ENST00000558836 ERCC3P19447 782 aa11.95□□□□□ -0.5
CUX1-217ENST00000558836 BRD2P25440 801 aaKnown RBP11.95□□□□□ -0.5
CUX1-217ENST00000558836 SLC1A4P43007 532 aa11.95□□□□□ -0.5
CUX1-217ENST00000558836 NCBP1Q09161 790 aaKnown RBP11.95□□□□□ -0.5
CUX1-217ENST00000558836 STK4Q13043 487 aa11.95□□□□□ -0.5
CUX1-217ENST00000558836 TRIM34Q9BYJ4 488 aa11.95□□□□□ -0.5
CUX1-217ENST00000558836 CCSER1Q9C0I3 900 aa11.95□□□□□ -0.5
CUX1-217ENST00000558836 PDCL3Q9H2J4 239 aa11.95□□□□□ -0.5
CUX1-217ENST00000558836 KBTBD4Q9NVX7 518 aa11.95□□□□□ -0.5
CUX1-217ENST00000558836 PNMA6FA0A0J9YX94 578 aa11.95□□□□□ -0.5
CUX1-217ENST00000558836 ASIC1P78348 528 aa11.95□□□□□ -0.5
CUX1-217ENST00000558836 DYMQ7RTS9 669 aa11.95□□□□□ -0.5
CUX1-217ENST00000558836 REXO1L1PQ8IX06 675 aa11.95□□□□□ -0.5
CUX1-217ENST00000558836 IRX2Q9BZI1 471 aaPredicted RBP11.95□□□□□ -0.5
CUX1-217ENST00000558836 RWDD2AQ9UIY3 292 aa11.95□□□□□ -0.5
CUX1-217ENST00000558836 PPP2R2CQ9Y2T4 447 aa11.95□□□□□ -0.5
CUX1-217ENST00000558836 CLRN2A0PK11 232 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 YDJCA8MPS7 323 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 KCNJ18B7U540 433 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 NKRFO15226 690 aaKnown RBP eCLIP11.94□□□□□ -0.57e-6■■□□□ 12.8
CUX1-217ENST00000558836 PPIP5K2O43314 1243 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 RAD17O75943 681 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 FXR1P51114 621 aaKnown RBP eCLIP11.94□□□□□ -0.5
CUX1-217ENST00000558836 KCNJ12Q14500 433 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 PPFIBP1Q86W92 1011 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 SIAH1Q8IUQ4 282 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 LRWD1Q9UFC0 647 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 FOCADQ5VW36 1801 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 AKR1B15C9JRZ8 316 aaPredicted RBP11.94□□□□□ -0.5
CUX1-217ENST00000558836 PDE4DQ08499 809 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 IKQ13123 557 aaPredicted RBP11.94□□□□□ -0.5
CUX1-217ENST00000558836 MCM6Q14566 821 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 USH1GQ495M9 461 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 TCP11X2Q5H9J9 407 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 IRF2BP1Q8IU81 584 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 PYM1Q9BRP8 204 aaKnown RBP11.94□□□□□ -0.5
CUX1-217ENST00000558836 SRRTQ9BXP5 876 aaKnown RBP11.94□□□□□ -0.5
CUX1-217ENST00000558836 PSTPIP2Q9H939 334 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 RMND1Q9NWS8 449 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 PI4KBQ9UBF8 816 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 PLIN4Q96Q06 1357 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 TCP10L2B9ZVM9 353 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 LAD1O00515 517 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 ZBTB5O15062 677 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 ARHGAP6O43182 974 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 SMARCA1P28370 1054 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 PRPHP41219 470 aa11.94□□□□□ -0.5
CUX1-217ENST00000558836 RRP1BQ14684 758 aaKnown RBP11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms