RNA–Protein interactions for RNA: ENST00000558253.5

SPG11-209, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 879 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-209ENST00000558253 ARID5BQ14865 1188 aa9.39□□□□□ -0.91
SPG11-209ENST00000558253 NONOQ15233 471 aaKnown RBP eCLIP9.39□□□□□ -0.91
SPG11-209ENST00000558253 MFSD14BQ5SR56 506 aa9.39□□□□□ -0.91
SPG11-209ENST00000558253 WWC2Q6AWC2 1192 aa9.39□□□□□ -0.91
SPG11-209ENST00000558253 ISM2Q6H9L7 571 aa9.39□□□□□ -0.91
SPG11-209ENST00000558253 CNGA4Q8IV77 575 aa9.39□□□□□ -0.91
SPG11-209ENST00000558253 PDILTQ8N807 584 aa9.39□□□□□ -0.91
SPG11-209ENST00000558253 SHISA4Q96DD7 197 aa9.39□□□□□ -0.91
SPG11-209ENST00000558253 IQCDQ96DY2 449 aa9.39□□□□□ -0.91
SPG11-209ENST00000558253 RAB34Q9BZG1 259 aa9.39□□□□□ -0.91
SPG11-209ENST00000558253 L2HGDHQ9H9P8 463 aa9.39□□□□□ -0.91
SPG11-209ENST00000558253 PCDHA6Q9UN73 950 aa9.39□□□□□ -0.91
SPG11-209ENST00000558253 PCDHA8Q9Y5H6 950 aa9.39□□□□□ -0.91
SPG11-209ENST00000558253 FLT1P17948 1338 aa9.38□□□□□ -0.91
SPG11-209ENST00000558253 A0A087WWV3 80 aa9.38□□□□□ -0.91
SPG11-209ENST00000558253 POLRMTO00411 1230 aaKnown RBP9.38□□□□□ -0.91
SPG11-209ENST00000558253 PPEF1O14829 653 aaPredicted RBP9.38□□□□□ -0.91
SPG11-209ENST00000558253 FOXN1O15353 648 aa9.38□□□□□ -0.91
SPG11-209ENST00000558253 HRO43593 1189 aa9.38□□□□□ -0.91
SPG11-209ENST00000558253 RPN1P04843 607 aaKnown RBP9.38□□□□□ -0.91
SPG11-209ENST00000558253 MCM7P33993 719 aa9.38□□□□□ -0.91
SPG11-209ENST00000558253 PDE6BP35913 854 aa9.38□□□□□ -0.91
SPG11-209ENST00000558253 STAT6P42226 847 aa9.38□□□□□ -0.91
SPG11-209ENST00000558253 RHBDL3P58872 404 aa9.38□□□□□ -0.91
SPG11-209ENST00000558253 RBM10P98175 930 aaKnown RBP9.38□□□□□ -0.91
SPG11-209ENST00000558253 HDLBPQ00341 1268 aaKnown RBP9.38□□□□□ -0.91
SPG11-209ENST00000558253 FMR1Q06787 632 aaKnown RBP eCLIP9.38□□□□□ -0.91
SPG11-209ENST00000558253 PAK1Q13153 545 aa9.38□□□□□ -0.91
SPG11-209ENST00000558253 COBLL1Q53SF7 1204 aa9.38□□□□□ -0.91
SPG11-209ENST00000558253 EARS2Q5JPH6 523 aaKnown RBP9.38□□□□□ -0.91
SPG11-209ENST00000558253 RRAGBQ5VZM2 374 aa9.38□□□□□ -0.91
SPG11-209ENST00000558253 HHIPL2Q6UWX4 724 aa9.38□□□□□ -0.91
SPG11-209ENST00000558253 HOMER1Q86YM7 354 aa9.38□□□□□ -0.91
SPG11-209ENST00000558253 DHTKD1Q96HY7 919 aaPredicted RBP9.38□□□□□ -0.91
SPG11-209ENST00000558253 CCDC17Q96LX7 622 aa9.38□□□□□ -0.91
SPG11-209ENST00000558253 ZC3H12CQ9C0D7 883 aaKnown RBP9.38□□□□□ -0.91
SPG11-209ENST00000558253 RIOX1Q9H6W3 641 aa9.38□□□□□ -0.91
SPG11-209ENST00000558253 DISC1Q9NRI5 854 aa9.38□□□□□ -0.91
SPG11-209ENST00000558253 ADD3Q9UEY8 706 aaKnown RBP9.38□□□□□ -0.91
SPG11-209ENST00000558253 PRDM4Q9UKN5 801 aa9.38□□□□□ -0.91
SPG11-209ENST00000558253 STX8Q9UNK0 236 aa9.38□□□□□ -0.91
SPG11-209ENST00000558253 CASZ1Q86V15 1759 aa9.37□□□□□ -0.91
SPG11-209ENST00000558253 BICDL2A1A5D9 508 aa9.37□□□□□ -0.91
SPG11-209ENST00000558253 C6orf229H3BNL8 230 aa9.37□□□□□ -0.91
SPG11-209ENST00000558253 SMIM22K7EJ46 135 aa9.37□□□□□ -0.91
SPG11-209ENST00000558253 PSMA7O14818 248 aa9.37□□□□□ -0.91
SPG11-209ENST00000558253 EEF1GP26641 437 aaKnown RBP9.37□□□□□ -0.91
SPG11-209ENST00000558253 AFMP43652 599 aa9.37□□□□□ -0.91
SPG11-209ENST00000558253 NAPAP54920 295 aa9.37□□□□□ -0.91
SPG11-209ENST00000558253 PDIA5Q14554 519 aa9.37□□□□□ -0.91
SPG11-209ENST00000558253 DIXDC1Q155Q3 683 aa9.37□□□□□ -0.91
SPG11-209ENST00000558253 GPATCH4Q5T3I0 446 aaKnown RBP9.37□□□□□ -0.91
SPG11-209ENST00000558253 FOXR2Q6PJQ5 311 aa9.37□□□□□ -0.91
SPG11-209ENST00000558253 USP49Q70CQ1 688 aa9.37□□□□□ -0.91
SPG11-209ENST00000558253 HEATR3Q7Z4Q2 680 aa9.37□□□□□ -0.91
SPG11-209ENST00000558253 MAPKAPK5Q8IW41 473 aa9.37□□□□□ -0.91
SPG11-209ENST00000558253 FAM114A1Q8IWE2 563 aa9.37□□□□□ -0.91
SPG11-209ENST00000558253 ZNF592Q92610 1267 aa9.37□□□□□ -0.91
SPG11-209ENST00000558253 DPF2Q92785 391 aa9.37□□□□□ -0.91
SPG11-209ENST00000558253 DYNLL2Q96FJ2 89 aa9.37□□□□□ -0.91
SPG11-209ENST00000558253 EHD4Q9H223 541 aa9.37□□□□□ -0.91
SPG11-209ENST00000558253 THAP9Q9H5L6 903 aa9.37□□□□□ -0.91
SPG11-209ENST00000558253 NPDC1Q9NQX5 325 aaPredicted RBP9.37□□□□□ -0.91
SPG11-209ENST00000558253 LRRC4BQ9NT99 713 aa9.37□□□□□ -0.91
SPG11-209ENST00000558253 KBTBD4Q9NVX7 518 aa9.37□□□□□ -0.91
SPG11-209ENST00000558253 TRMT1Q9NXH9 659 aaKnown RBP9.37□□□□□ -0.91
SPG11-209ENST00000558253 TNRC6CQ9HCJ0 1690 aaKnown RBP9.36□□□□□ -0.91
SPG11-209ENST00000558253 A0A087X0B3 334 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 hCG_1642624A0A1W2PR95 340 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 USP17L3A6NCW0 530 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 USP17L4A6NCW7 530 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 SMCO2A6NFE2 343 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 USP27XA6NNY8 438 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 PLSCR1O15162 318 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 RHOBTB3O94955 611 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 KIF20AO95235 890 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 FGFR1OPO95684 399 aaKnown RBP9.36□□□□□ -0.91
SPG11-209ENST00000558253 TTLL1O95922 423 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 HLA-DOAP06340 250 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 CCDC175P0C221 793 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 OR52Z1P0C646 297 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 SNHG28P0DPA3 235 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 GCFC2P16383 781 aaKnown RBP9.36□□□□□ -0.91
SPG11-209ENST00000558253 FECHP22830 423 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 PBX1P40424 430 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 GABPAQ06546 454 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 SEPT2Q15019 361 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 TMEM266Q2M3C6 531 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 GRIPAP1Q4V328 841 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 CCDC93Q567U6 631 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 CNNM4Q6P4Q7 775 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 USP17L1Q7RTZ2 530 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 KRT27Q7Z3Y8 459 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 PODNQ7Z5L7 613 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 NEK8Q86SG6 692 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 AMIGO3Q86WK7 504 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 TMTC1Q8IUR5 882 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 STAG2Q8N3U4 1231 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 IGSF22Q8N9C0 903 aa9.36□□□□□ -0.91
SPG11-209ENST00000558253 TC2NQ8N9U0 490 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms