RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 POLR2BP30876 1174 aaKnown RBP8.85□□□□□ -0.99
RTF1-204ENST00000558117 COL9A2Q14055 689 aaPredicted RBP8.85□□□□□ -0.99
RTF1-204ENST00000558117 NLRC3Q7RTR2 1065 aa8.85□□□□□ -0.99
RTF1-204ENST00000558117 THAP5Q7Z6K1 395 aa8.85□□□□□ -0.99
RTF1-204ENST00000558117 PI4K2BQ8TCG2 481 aa8.85□□□□□ -0.99
RTF1-204ENST00000558117 KREMEN1Q96MU8 473 aa8.85□□□□□ -0.99
RTF1-204ENST00000558117 TINF2Q9BSI4 451 aa8.85□□□□□ -0.99
RTF1-204ENST00000558117 ASPNQ9BXN1 380 aa8.85□□□□□ -0.99
RTF1-204ENST00000558117 PDGFDQ9GZP0 370 aaPredicted RBP8.85□□□□□ -0.99
RTF1-204ENST00000558117 ST14Q9Y5Y6 855 aa8.85□□□□□ -0.99
RTF1-204ENST00000558117 CEP152O94986 1710 aa8.85□□□□□ -0.99
RTF1-204ENST00000558117 RGS13O14921 159 aa8.84□□□□□ -0.99
RTF1-204ENST00000558117 ADGRB2O60241 1585 aa8.84□□□□□ -0.99
RTF1-204ENST00000558117 UBOX5O94941 541 aa8.84□□□□□ -0.99
RTF1-204ENST00000558117 NME1P15531 152 aaKnown RBP8.84□□□□□ -0.99
RTF1-204ENST00000558117 NOS1P29475 1434 aa8.84□□□□□ -0.99
RTF1-204ENST00000558117 RNF4P78317 190 aa8.84□□□□□ -0.99
RTF1-204ENST00000558117 RUFY4Q6ZNE9 571 aa8.84□□□□□ -0.99
RTF1-204ENST00000558117 WFDC3Q8IUB2 231 aa8.84□□□□□ -0.99
RTF1-204ENST00000558117 JMYQ8N9B5 988 aa8.84□□□□□ -0.99
RTF1-204ENST00000558117 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.84□□□□□ -0.99
RTF1-204ENST00000558117 TRIT1Q9H3H1 467 aaKnown RBP8.84□□□□□ -0.99
RTF1-204ENST00000558117 ZSWIM5Q9P217 1185 aa8.84□□□□□ -0.99
RTF1-204ENST00000558117 RPRD2Q5VT52 1461 aaKnown RBP8.83□□□□□ -1
RTF1-204ENST00000558117 CCDC141Q6ZP82 1450 aa8.83□□□□□ -1
RTF1-204ENST00000558117 RIMS2Q9UQ26 1411 aa8.83□□□□□ -1
RTF1-204ENST00000558117 ZBTB7AO95365 584 aa8.83□□□□□ -1
RTF1-204ENST00000558117 ATF4P18848 351 aaPredicted RBP8.83□□□□□ -1
RTF1-204ENST00000558117 ZP2Q05996 745 aa8.83□□□□□ -1
RTF1-204ENST00000558117 GPR162Q16538 588 aa8.83□□□□□ -1
RTF1-204ENST00000558117 ZNF792Q3KQV3 632 aa8.83□□□□□ -1
RTF1-204ENST00000558117 DTWD2Q8NBA8 298 aa8.83□□□□□ -1
RTF1-204ENST00000558117 UBE2FQ969M7 185 aa8.83□□□□□ -1
RTF1-204ENST00000558117 SEC16BQ96JE7 1060 aa8.83□□□□□ -1
RTF1-204ENST00000558117 Q96M66 194 aa8.83□□□□□ -1
RTF1-204ENST00000558117 ATP13A1Q9HD20 1204 aa8.83□□□□□ -1
RTF1-204ENST00000558117 SEMA3GQ9NS98 782 aa8.83□□□□□ -1
RTF1-204ENST00000558117 ADGRE2Q9UHX3 823 aa8.83□□□□□ -1
RTF1-204ENST00000558117 DLC1Q96QB1 1528 aa8.83□□□□□ -1
RTF1-204ENST00000558117 ATP10DQ9P241 1426 aa8.82□□□□□ -1
RTF1-204ENST00000558117 EHBP1L1Q8N3D4 1523 aa8.82□□□□□ -1
RTF1-204ENST00000558117 NPM2Q86SE8 214 aaKnown RBP8.82□□□□□ -1
RTF1-204ENST00000558117 RBBP8NLQ8NC74 664 aaPredicted RBP8.82□□□□□ -1
RTF1-204ENST00000558117 SLC9A7Q96T83 725 aa8.82□□□□□ -1
RTF1-204ENST00000558117 GPATCH2Q9NW75 528 aa8.82□□□□□ -1
RTF1-204ENST00000558117 TMEM131LA2VDJ0 1609 aa8.82□□□□□ -1
RTF1-204ENST00000558117 TNFRSF10CO14798 259 aa8.81□□□□□ -1
RTF1-204ENST00000558117 LRRN2O75325 713 aa8.81□□□□□ -1
RTF1-204ENST00000558117 ACRP10323 421 aa8.81□□□□□ -1
RTF1-204ENST00000558117 CCNFP41002 786 aa8.81□□□□□ -1
RTF1-204ENST00000558117 MCTP1Q6DN14 999 aa8.81□□□□□ -1
RTF1-204ENST00000558117 SLC23A3Q6PIS1 610 aa8.81□□□□□ -1
RTF1-204ENST00000558117 LSRQ86X29 649 aaPredicted RBP8.81□□□□□ -1
RTF1-204ENST00000558117 VWCEQ96DN2 955 aa8.81□□□□□ -1
RTF1-204ENST00000558117 SRRTQ9BXP5 876 aaKnown RBP8.81□□□□□ -1
RTF1-204ENST00000558117 ASCC2Q9H1I8 757 aaPredicted RBP8.81□□□□□ -1
RTF1-204ENST00000558117 RC3H2Q9HBD1 1191 aaKnown RBP8.81□□□□□ -1
RTF1-204ENST00000558117 CASZ1Q86V15 1759 aa8.81□□□□□ -1
RTF1-204ENST00000558117 FAM86C2PA6NEL3 165 aa8.8□□□□□ -1
RTF1-204ENST00000558117 CLEC3AO75596 197 aa8.8□□□□□ -1
RTF1-204ENST00000558117 GIPRP48546 466 aa8.8□□□□□ -1
RTF1-204ENST00000558117 EIF6P56537 245 aaKnown RBP8.8□□□□□ -1
RTF1-204ENST00000558117 TMEM192Q8IY95 271 aa8.8□□□□□ -1
RTF1-204ENST00000558117 SHDQ96IW2 340 aa8.8□□□□□ -1
RTF1-204ENST00000558117 CRBNQ96SW2 442 aa8.8□□□□□ -1
RTF1-204ENST00000558117 CARS2Q9HA77 564 aaKnown RBP8.8□□□□□ -1
RTF1-204ENST00000558117 LMCD1Q9NZU5 365 aa8.8□□□□□ -1
RTF1-204ENST00000558117 MAP3K5Q99683 1374 aa8.8□□□□□ -1
RTF1-204ENST00000558117 TNS2Q63HR2 1409 aa8.8□□□□□ -1
RTF1-204ENST00000558117 CASKIN1Q8WXD9 1431 aa8.8□□□□□ -1
RTF1-204ENST00000558117 PXDNQ92626 1479 aa8.79□□□□□ -1
RTF1-204ENST00000558117 AATKQ6ZMQ8 1374 aa8.79□□□□□ -1
RTF1-204ENST00000558117 TPP2P29144 1249 aaPredicted RBP8.79□□□□□ -1
RTF1-204ENST00000558117 CLEC16AQ2KHT3 1053 aa8.79□□□□□ -1
RTF1-204ENST00000558117 TMPRSS7Q7RTY8 843 aa8.79□□□□□ -1
RTF1-204ENST00000558117 VPS37DQ86XT2 251 aa8.79□□□□□ -1
RTF1-204ENST00000558117 SLC52A1Q9NWF4 448 aa8.79□□□□□ -1
RTF1-204ENST00000558117 RNASE1P07998 156 aaKnown RBP8.78□□□□□ -1
RTF1-204ENST00000558117 TAL1P17542 331 aaPredicted RBP8.78□□□□□ -1
RTF1-204ENST00000558117 GNL2Q13823 731 aaKnown RBP8.78□□□□□ -1
RTF1-204ENST00000558117 ZYXQ15942 572 aaKnown RBP8.78□□□□□ -1
RTF1-204ENST00000558117 INTS3Q68E01 1043 aaKnown RBP8.78□□□□□ -1
RTF1-204ENST00000558117 CPLX3Q8WVH0 158 aa8.78□□□□□ -1
RTF1-204ENST00000558117 TM9SF2Q99805 663 aa8.78□□□□□ -1
RTF1-204ENST00000558117 GPR62Q9BZJ7 368 aa8.78□□□□□ -1
RTF1-204ENST00000558117 PRDM7Q9NQW5 492 aa8.78□□□□□ -1
RTF1-204ENST00000558117 EIF2AK4Q9P2K8 1649 aaKnown RBP8.78□□□□□ -1
RTF1-204ENST00000558117 BIN1O00499 593 aa8.77□□□□□ -1.01
RTF1-204ENST00000558117 CBLL1Q75N03 491 aa8.77□□□□□ -1.01
RTF1-204ENST00000558117 CREG2Q8IUH2 290 aa8.77□□□□□ -1.01
RTF1-204ENST00000558117 SLC43A3Q8NBI5 491 aa8.77□□□□□ -1.01
RTF1-204ENST00000558117 ZNF512BQ96KM6 892 aaPredicted RBP8.77□□□□□ -1.01
RTF1-204ENST00000558117 MKRN2Q9H000 416 aaKnown RBP8.77□□□□□ -1.01
RTF1-204ENST00000558117 MBNL3Q9NUK0 354 aaKnown RBP8.77□□□□□ -1.01
RTF1-204ENST00000558117 DUSP13Q9UII6 198 aa8.77□□□□□ -1.01
RTF1-204ENST00000558117 ADAMTS6Q9UKP5 1117 aa8.77□□□□□ -1.01
RTF1-204ENST00000558117 NPHP3Q7Z494 1330 aa8.77□□□□□ -1.01
RTF1-204ENST00000558117 XRN1Q8IZH2 1706 aaKnown RBP8.77□□□□□ -1.01
RTF1-204ENST00000558117 ADGRL2O95490 1459 aa8.77□□□□□ -1.01
RTF1-204ENST00000558117 USP32Q8NFA0 1604 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms