RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 UBXN11Q5T124 520 aa4.86□□□□□ -1.63
VPS13C-205ENST00000558088 RNF34Q969K3 372 aa4.86□□□□□ -1.63
VPS13C-205ENST00000558088 FERD3LQ96RJ6 166 aa4.86□□□□□ -1.63
VPS13C-205ENST00000558088 SLC12A9Q9BXP2 914 aa4.86□□□□□ -1.63
VPS13C-205ENST00000558088 RNF38Q9H0F5 515 aa4.86□□□□□ -1.63
VPS13C-205ENST00000558088 SUSD2Q9UGT4 822 aa4.86□□□□□ -1.63
VPS13C-205ENST00000558088 PALD1Q9ULE6 856 aa4.86□□□□□ -1.63
VPS13C-205ENST00000558088 SF3B6Q9Y3B4 125 aaKnown RBP4.86□□□□□ -1.63
VPS13C-205ENST00000558088 PMF1-BGLAPU3KQ54 211 aa4.86□□□□□ -1.63
VPS13C-205ENST00000558088 F8W031 263 aaPredicted RBP4.85□□□□□ -1.63
VPS13C-205ENST00000558088 H0Y8X5 98 aa4.85□□□□□ -1.63
VPS13C-205ENST00000558088 DBHP09172 617 aa4.85□□□□□ -1.63
VPS13C-205ENST00000558088 ITGA4P13612 1032 aa4.85□□□□□ -1.63
VPS13C-205ENST00000558088 SLURP1P55000 103 aa4.85□□□□□ -1.63
VPS13C-205ENST00000558088 POU4F1Q01851 419 aa4.85□□□□□ -1.63
VPS13C-205ENST00000558088 TDRD10Q5VZ19 366 aaKnown RBP4.85□□□□□ -1.63
VPS13C-205ENST00000558088 LSRQ86X29 649 aaPredicted RBP4.85□□□□□ -1.63
VPS13C-205ENST00000558088 TMEM52Q8NDY8 209 aa4.85□□□□□ -1.63
VPS13C-205ENST00000558088 GIPC2Q8TF65 315 aa4.85□□□□□ -1.63
VPS13C-205ENST00000558088 TM9SF2Q99805 663 aa4.85□□□□□ -1.63
VPS13C-205ENST00000558088 ZNRF3Q9ULT6 936 aa4.85□□□□□ -1.63
VPS13C-205ENST00000558088 FHOD1Q9Y613 1164 aa4.85□□□□□ -1.63
VPS13C-205ENST00000558088 IRS2Q9Y4H2 1338 aa4.85□□□□□ -1.63
VPS13C-205ENST00000558088 C9IYK1 514 aa4.84□□□□□ -1.63
VPS13C-205ENST00000558088 K7ESM1 405 aa4.84□□□□□ -1.63
VPS13C-205ENST00000558088 FFAR3O14843 346 aa4.84□□□□□ -1.63
VPS13C-205ENST00000558088 FGF10O15520 208 aaPredicted RBP4.84□□□□□ -1.63
VPS13C-205ENST00000558088 FOXO4P98177 505 aa4.84□□□□□ -1.63
VPS13C-205ENST00000558088 TCEAL1Q15170 157 aa4.84□□□□□ -1.63
VPS13C-205ENST00000558088 ANKRD39Q53RE8 183 aa4.84□□□□□ -1.63
VPS13C-205ENST00000558088 FBXW10Q5XX13 1052 aa4.84□□□□□ -1.63
VPS13C-205ENST00000558088 FIBCD1Q8N539 461 aa4.84□□□□□ -1.63
VPS13C-205ENST00000558088 TAB3Q8N5C8 712 aaPredicted RBP4.84□□□□□ -1.63
VPS13C-205ENST00000558088 TP53I13Q8NBR0 393 aaPredicted RBP4.84□□□□□ -1.63
VPS13C-205ENST00000558088 SRRTQ9BXP5 876 aaKnown RBP4.84□□□□□ -1.63
VPS13C-205ENST00000558088 GP6Q9HCN6 339 aa4.84□□□□□ -1.63
VPS13C-205ENST00000558088 CD3EP07766 207 aa4.83□□□□□ -1.64
VPS13C-205ENST00000558088 NCAM1P13591 858 aa4.83□□□□□ -1.64
VPS13C-205ENST00000558088 TACR1P25103 407 aa4.83□□□□□ -1.64
VPS13C-205ENST00000558088 L1CAMP32004 1257 aa4.83□□□□□ -1.64
VPS13C-205ENST00000558088 CEBPAP49715 358 aaPredicted RBP4.83□□□□□ -1.64
VPS13C-205ENST00000558088 ZNF445P59923 1031 aa4.83□□□□□ -1.64
VPS13C-205ENST00000558088 PRR5P85299 388 aa4.83□□□□□ -1.64
VPS13C-205ENST00000558088 EFEMP1Q12805 493 aa4.83□□□□□ -1.64
VPS13C-205ENST00000558088 RTP5Q14D33 572 aa4.83□□□□□ -1.64
VPS13C-205ENST00000558088 DCAF15Q66K64 600 aa4.83□□□□□ -1.64
VPS13C-205ENST00000558088 LIPIQ6XZB0 460 aa4.83□□□□□ -1.64
VPS13C-205ENST00000558088 FNIP1Q8TF40 1166 aa4.83□□□□□ -1.64
VPS13C-205ENST00000558088 ALG3Q92685 438 aa4.83□□□□□ -1.64
VPS13C-205ENST00000558088 BRF1Q92994 677 aa4.83□□□□□ -1.64
VPS13C-205ENST00000558088 PTCHD1Q96NR3 888 aa4.83□□□□□ -1.64
VPS13C-205ENST00000558088 NUDT5Q9UKK9 219 aa4.83□□□□□ -1.64
VPS13C-205ENST00000558088 CNOT11Q9UKZ1 510 aaKnown RBP4.83□□□□□ -1.64
VPS13C-205ENST00000558088 ADAMTS20P59510 1910 aa4.82□□□□□ -1.64
VPS13C-205ENST00000558088 SHOXO15266 292 aa4.82□□□□□ -1.64
VPS13C-205ENST00000558088 TP53P04637 393 aaPredicted RBP4.82□□□□□ -1.64
VPS13C-205ENST00000558088 ACRP10323 421 aa4.82□□□□□ -1.64
VPS13C-205ENST00000558088 CD247P20963 164 aa4.82□□□□□ -1.64
VPS13C-205ENST00000558088 GJA9P57773 515 aa4.82□□□□□ -1.64
VPS13C-205ENST00000558088 NFKB2Q00653 900 aa4.82□□□□□ -1.64
VPS13C-205ENST00000558088 ZNF827Q17R98 1081 aa4.82□□□□□ -1.64
VPS13C-205ENST00000558088 ZXDCQ2QGD7 858 aaPredicted RBP4.82□□□□□ -1.64
VPS13C-205ENST00000558088 AXDND1Q5T1B0 1012 aaPredicted RBP4.82□□□□□ -1.64
VPS13C-205ENST00000558088 ZFYVE27Q5T4F4 411 aa4.82□□□□□ -1.64
VPS13C-205ENST00000558088 NT5DC1Q5TFE4 455 aa4.82□□□□□ -1.64
VPS13C-205ENST00000558088 EEF1DP3Q658K8 133 aa4.82□□□□□ -1.64
VPS13C-205ENST00000558088 GGNQ86UU5 652 aa4.82□□□□□ -1.64
VPS13C-205ENST00000558088 TMEM87AQ8NBN3 555 aa4.82□□□□□ -1.64
VPS13C-205ENST00000558088 ZDHHC15Q96MV8 337 aa4.82□□□□□ -1.64
VPS13C-205ENST00000558088 GPR20Q99678 358 aa4.82□□□□□ -1.64
VPS13C-205ENST00000558088 NOL6Q9H6R4 1146 aaKnown RBP4.82□□□□□ -1.64
VPS13C-205ENST00000558088 FAM86C1Q9NVL1 165 aa4.82□□□□□ -1.64
VPS13C-205ENST00000558088 GUCY2CP25092 1073 aa4.81□□□□□ -1.64
VPS13C-205ENST00000558088 ZNF76P36508 570 aa4.81□□□□□ -1.64
VPS13C-205ENST00000558088 MRPL58Q14197 206 aaKnown RBP4.81□□□□□ -1.64
VPS13C-205ENST00000558088 B3GNT8Q7Z7M8 397 aa4.81□□□□□ -1.64
VPS13C-205ENST00000558088 SAPCD2Q86UD0 394 aa4.81□□□□□ -1.64
VPS13C-205ENST00000558088 NLGN2Q8NFZ4 835 aa4.81□□□□□ -1.64
VPS13C-205ENST00000558088 FCRL3Q96P31 734 aaPredicted RBP4.81□□□□□ -1.64
VPS13C-205ENST00000558088 SPATA25Q9BR10 227 aa4.81□□□□□ -1.64
VPS13C-205ENST00000558088 GZF1Q9H116 711 aaPredicted RBP4.81□□□□□ -1.64
VPS13C-205ENST00000558088 DIS3Q9Y2L1 958 aaKnown RBP4.81□□□□□ -1.64
VPS13C-205ENST00000558088 A0A087WZG4 1122 aa4.8□□□□□ -1.64
VPS13C-205ENST00000558088 PRICKLE3O43900 615 aaPredicted RBP4.8□□□□□ -1.64
VPS13C-205ENST00000558088 ASGR2P07307 311 aa4.8□□□□□ -1.64
VPS13C-205ENST00000558088 IFNGR1P15260 489 aa4.8□□□□□ -1.64
VPS13C-205ENST00000558088 ATF2P15336 505 aa4.8□□□□□ -1.64
VPS13C-205ENST00000558088 FBLN1P23142 703 aa4.8□□□□□ -1.64
VPS13C-205ENST00000558088 TRIM26Q12899 539 aaPredicted RBP4.8□□□□□ -1.64
VPS13C-205ENST00000558088 PPP2R5DQ14738 602 aa4.8□□□□□ -1.64
VPS13C-205ENST00000558088 SLC9A5Q14940 896 aa4.8□□□□□ -1.64
VPS13C-205ENST00000558088 VWA3BQ502W6 1294 aa4.8□□□□□ -1.64
VPS13C-205ENST00000558088 PPFIBP1Q86W92 1011 aa4.8□□□□□ -1.64
VPS13C-205ENST00000558088 LZTR1Q8N653 840 aa4.8□□□□□ -1.64
VPS13C-205ENST00000558088 PEX11GQ96HA9 241 aa4.8□□□□□ -1.64
VPS13C-205ENST00000558088 CRBNQ96SW2 442 aa4.8□□□□□ -1.64
VPS13C-205ENST00000558088 GBP3Q9H0R5 595 aa4.8□□□□□ -1.64
VPS13C-205ENST00000558088 NTMQ9P121 344 aa4.8□□□□□ -1.64
VPS13C-205ENST00000558088 HCFC2Q9Y5Z7 792 aa4.8□□□□□ -1.64
VPS13C-205ENST00000558088 SLC12A7Q9Y666 1083 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms