RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 SMAD3P84022 425 aaKnown RBP13.06□□□□□ -0.32
CCDC88C-213ENST00000557455 TNFAIP2Q03169 654 aa13.06□□□□□ -0.32
CCDC88C-213ENST00000557455 MUM1L1Q5H9M0 696 aa13.06□□□□□ -0.32
CCDC88C-213ENST00000557455 B4GALNT3Q6L9W6 998 aa13.06□□□□□ -0.32
CCDC88C-213ENST00000557455 NSMFQ6X4W1 530 aa13.06□□□□□ -0.32
CCDC88C-213ENST00000557455 ZNF589Q86UQ0 364 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-213ENST00000557455 RNPC3Q96LT9 517 aaKnown RBP13.06□□□□□ -0.32
CCDC88C-213ENST00000557455 TMEM47Q9BQJ4 181 aa13.06□□□□□ -0.32
CCDC88C-213ENST00000557455 RANBP17Q9H2T7 1088 aaKnown RBP13.06□□□□□ -0.32
CCDC88C-213ENST00000557455 RWDD1Q9H446 243 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-213ENST00000557455 TCP11L1Q9NUJ3 509 aa13.06□□□□□ -0.32
CCDC88C-213ENST00000557455 CYP39A1Q9NYL5 469 aa13.06□□□□□ -0.32
CCDC88C-213ENST00000557455 ZMYM6O95789 1325 aa13.06□□□□□ -0.32
CCDC88C-213ENST00000557455 CCDC171Q6TFL3 1326 aa13.06□□□□□ -0.32
CCDC88C-213ENST00000557455 ARVCFO00192 962 aa13.05□□□□□ -0.32
CCDC88C-213ENST00000557455 TIMP1P01033 207 aa13.05□□□□□ -0.32
CCDC88C-213ENST00000557455 SLC16A2P36021 539 aa13.05□□□□□ -0.32
CCDC88C-213ENST00000557455 CDK7P50613 346 aa13.05□□□□□ -0.32
CCDC88C-213ENST00000557455 EPHB4P54760 987 aa13.05□□□□□ -0.32
CCDC88C-213ENST00000557455 MFAP1P55081 439 aaKnown RBP13.05□□□□□ -0.32
CCDC88C-213ENST00000557455 HAND2P61296 217 aa13.05□□□□□ -0.32
CCDC88C-213ENST00000557455 BEX3Q00994 111 aa13.05□□□□□ -0.32
CCDC88C-213ENST00000557455 SYDE2Q5VT97 1194 aa13.05□□□□□ -0.32
CCDC88C-213ENST00000557455 TTBK2Q6IQ55 1244 aa13.05□□□□□ -0.32
CCDC88C-213ENST00000557455 BTNL9Q6UXG8 535 aa13.05□□□□□ -0.32
CCDC88C-213ENST00000557455 MFSD6Q6ZSS7 791 aa13.05□□□□□ -0.32
CCDC88C-213ENST00000557455 YTHDC1Q96MU7 727 aaKnown RBP13.05□□□□□ -0.32
CCDC88C-213ENST00000557455 FRMPD2Q68DX3 1309 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-213ENST00000557455 LAMA4Q16363 1823 aa13.04□□□□□ -0.32
CCDC88C-213ENST00000557455 UNC80Q8N2C7 3258 aa13.04□□□□□ -0.32
CCDC88C-213ENST00000557455 CDH23Q9H251 3354 aa13.04□□□□□ -0.32
CCDC88C-213ENST00000557455 CTAGE5O15320 804 aa13.04□□□□□ -0.32
CCDC88C-213ENST00000557455 TLR3O15455 904 aaKnown RBP13.04□□□□□ -0.32
CCDC88C-213ENST00000557455 PCP11498 1178 aaKnown RBP13.04□□□□□ -0.32
CCDC88C-213ENST00000557455 NKX3-2P78367 333 aa13.04□□□□□ -0.32
CCDC88C-213ENST00000557455 AKNAD1Q5T1N1 836 aa13.04□□□□□ -0.32
CCDC88C-213ENST00000557455 IQSEC1Q6DN90 963 aa13.04□□□□□ -0.32
CCDC88C-213ENST00000557455 EEPD1Q7L9B9 569 aa13.04□□□□□ -0.32
CCDC88C-213ENST00000557455 TLK2Q86UE8 772 aa13.04□□□□□ -0.32
CCDC88C-213ENST00000557455 SMC5Q8IY18 1101 aa13.04□□□□□ -0.32
CCDC88C-213ENST00000557455 AP5M1Q9H0R1 490 aa13.04□□□□□ -0.32
CCDC88C-213ENST00000557455 SEMA6BQ9H3T3 888 aa13.04□□□□□ -0.32
CCDC88C-213ENST00000557455 GPCPD1Q9NPB8 672 aa13.04□□□□□ -0.32
CCDC88C-213ENST00000557455 TBX21Q9UL17 535 aa13.04□□□□□ -0.32
CCDC88C-213ENST00000557455 GNEQ9Y223 722 aaKnown RBP13.04□□□□□ -0.32
CCDC88C-213ENST00000557455 DDX49Q9Y6V7 483 aaKnown RBP13.04□□□□□ -0.32
CCDC88C-213ENST00000557455 ASTN1O14525 1302 aa13.04□□□□□ -0.32
CCDC88C-213ENST00000557455 A0A0C4DFX4 3053 aa13.04□□□□□ -0.32
CCDC88C-213ENST00000557455 DYNC1LI2O43237 492 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-213ENST00000557455 ZEB2O60315 1214 aa13.03□□□□□ -0.32
CCDC88C-213ENST00000557455 CABYRO75952 493 aa13.03□□□□□ -0.32
CCDC88C-213ENST00000557455 SMPD1P17405 629 aa13.03□□□□□ -0.32
CCDC88C-213ENST00000557455 SDSP20132 328 aa13.03□□□□□ -0.32
CCDC88C-213ENST00000557455 BAATQ14032 418 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-213ENST00000557455 FSCN1Q16658 493 aaKnown RBP13.03□□□□□ -0.32
CCDC88C-213ENST00000557455 MFSD5Q6N075 450 aa13.03□□□□□ -0.32
CCDC88C-213ENST00000557455 TAPT1Q6NXT6 567 aa13.03□□□□□ -0.32
CCDC88C-213ENST00000557455 CHD1LQ86WJ1 897 aa13.03□□□□□ -0.32
CCDC88C-213ENST00000557455 FBXO16Q8IX29 292 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-213ENST00000557455 FAM126BQ8IXS8 530 aa13.03□□□□□ -0.32
CCDC88C-213ENST00000557455 TTC14Q96N46 770 aa13.03□□□□□ -0.32
CCDC88C-213ENST00000557455 PURBQ96QR8 312 aaKnown RBP13.03□□□□□ -0.32
CCDC88C-213ENST00000557455 CDX2Q99626 313 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-213ENST00000557455 RNF41Q9H4P4 317 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-213ENST00000557455 VTA1Q9NP79 307 aa13.03□□□□□ -0.32
CCDC88C-213ENST00000557455 PDGFCQ9NRA1 345 aa13.03□□□□□ -0.32
CCDC88C-213ENST00000557455 ADD3Q9UEY8 706 aaKnown RBP13.03□□□□□ -0.32
CCDC88C-213ENST00000557455 MYH6P13533 1939 aa13.02□□□□□ -0.32
CCDC88C-213ENST00000557455 PTPDC1A2A3K4 754 aa13.02□□□□□ -0.33
CCDC88C-213ENST00000557455 NFIBO00712 420 aa13.02□□□□□ -0.33
CCDC88C-213ENST00000557455 ZNF213O14771 459 aa13.02□□□□□ -0.33
CCDC88C-213ENST00000557455 PDHBP11177 359 aa13.02□□□□□ -0.33
CCDC88C-213ENST00000557455 ZNF543Q08ER8 600 aa13.02□□□□□ -0.33
CCDC88C-213ENST00000557455 PPIGQ13427 754 aaKnown RBP eCLIP13.02□□□□□ -0.33
CCDC88C-213ENST00000557455 CXCL17Q6UXB2 119 aa13.02□□□□□ -0.33
CCDC88C-213ENST00000557455 KIAA1211Q6ZU35 1233 aa13.02□□□□□ -0.33
CCDC88C-213ENST00000557455 TBC1D10CQ8IV04 446 aa13.02□□□□□ -0.33
CCDC88C-213ENST00000557455 PLEKHM2Q8IWE5 1019 aa13.02□□□□□ -0.33
CCDC88C-213ENST00000557455 TMEM199Q8N511 208 aa13.02□□□□□ -0.33
CCDC88C-213ENST00000557455 ESR2Q92731 530 aa13.02□□□□□ -0.33
CCDC88C-213ENST00000557455 PPP1R12CQ9BZL4 782 aa13.02□□□□□ -0.33
CCDC88C-213ENST00000557455 TTYH1Q9H313 450 aaPredicted RBP13.02□□□□□ -0.33
CCDC88C-213ENST00000557455 OSBPL3Q9H4L5 887 aa13.02□□□□□ -0.33
CCDC88C-213ENST00000557455 PNMA2Q9UL42 364 aa13.02□□□□□ -0.33
CCDC88C-213ENST00000557455 Q9Y3F1 56 aa13.02□□□□□ -0.33
CCDC88C-213ENST00000557455 TMEM265A0A087WTH1 108 aa13.01□□□□□ -0.33
CCDC88C-213ENST00000557455 LOC102724159A0A0B4J2E5 919 aa13.01□□□□□ -0.33
CCDC88C-213ENST00000557455 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.01□□□□□ -0.33
CCDC88C-213ENST00000557455 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.01□□□□□ -0.33
CCDC88C-213ENST00000557455 CD4P01730 458 aa13.01□□□□□ -0.33
CCDC88C-213ENST00000557455 IGHDP01880 384 aa13.01□□□□□ -0.33
CCDC88C-213ENST00000557455 ALDH5A1P51649 535 aaPredicted RBP13.01□□□□□ -0.33
CCDC88C-213ENST00000557455 PWP2Q15269 919 aaKnown RBP13.01□□□□□ -0.33
CCDC88C-213ENST00000557455 CWC27Q6UX04 472 aaKnown RBP13.01□□□□□ -0.33
CCDC88C-213ENST00000557455 MORC4Q8TE76 937 aa13.01□□□□□ -0.33
CCDC88C-213ENST00000557455 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.01□□□□□ -0.33
CCDC88C-213ENST00000557455 EYSQ5T1H1 3165 aa13□□□□□ -0.33
CCDC88C-213ENST00000557455 NEDD4P46934 1319 aa13□□□□□ -0.33
CCDC88C-213ENST00000557455 SNHG28P0DPA3 235 aa13□□□□□ -0.33
CCDC88C-213ENST00000557455 CSF2RAP15509 400 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms