RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 DPCR1Q3MIW9 517 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 SPECC1Q5M775 1068 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 KCTD1Q719H9 257 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 RASGRP2Q7LDG7 609 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 PLA2G4DQ86XP0 818 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 SPATA20Q8TB22 786 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 RASGRP4Q8TDF6 673 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 GSDMAQ96QA5 445 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 CPVLQ9H3G5 476 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 TMX2Q9Y320 296 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 PCDHA5Q9Y5H7 936 aa14.3□□□□□ -0.12
SHMT2-229ENST00000557348 MYH4Q9Y623 1939 aa14.29□□□□□ -0.12
SHMT2-229ENST00000557348 FAM196BA6NMK8 535 aa14.29□□□□□ -0.12
SHMT2-229ENST00000557348 WNT10BO00744 389 aa14.29□□□□□ -0.12
SHMT2-229ENST00000557348 PLA2G6O60733 806 aa14.29□□□□□ -0.12
SHMT2-229ENST00000557348 GDF11O95390 407 aa14.29□□□□□ -0.12
SHMT2-229ENST00000557348 NDUFB10O96000 172 aa14.29□□□□□ -0.12
SHMT2-229ENST00000557348 ASNSP08243 561 aa14.29□□□□□ -0.12
SHMT2-229ENST00000557348 PTGER2P43116 358 aa14.29□□□□□ -0.12
SHMT2-229ENST00000557348 SARSP49591 514 aaKnown RBP14.29□□□□□ -0.12
SHMT2-229ENST00000557348 ZNF75DP51815 510 aa14.29□□□□□ -0.12
SHMT2-229ENST00000557348 SLC20A2Q08357 652 aa14.29□□□□□ -0.12
SHMT2-229ENST00000557348 NOM1Q5C9Z4 860 aaKnown RBP14.29□□□□□ -0.12
SHMT2-229ENST00000557348 DHX40Q8IX18 779 aaKnown RBP14.29□□□□□ -0.12
SHMT2-229ENST00000557348 AOPEPQ8N6M6 819 aa14.29□□□□□ -0.12
SHMT2-229ENST00000557348 TBCKQ8TEA7 893 aa14.29□□□□□ -0.12
SHMT2-229ENST00000557348 AMNQ9BXJ7 453 aa14.29□□□□□ -0.12
SHMT2-229ENST00000557348 CCSER1Q9C0I3 900 aa14.29□□□□□ -0.12
SHMT2-229ENST00000557348 TSPYL1Q9H0U9 437 aa14.29□□□□□ -0.12
SHMT2-229ENST00000557348 KCND1Q9NSA2 647 aa14.29□□□□□ -0.12
SHMT2-229ENST00000557348 ZBTB21Q9ULJ3 1066 aa14.29□□□□□ -0.12
SHMT2-229ENST00000557348 FZD9O00144 591 aa14.28□□□□□ -0.12
SHMT2-229ENST00000557348 RIOK3O14730 519 aaKnown RBP14.28□□□□□ -0.12
SHMT2-229ENST00000557348 CCNT1O60563 726 aaKnown RBP14.28□□□□□ -0.12
SHMT2-229ENST00000557348 FOSP01100 380 aaPredicted RBP14.28□□□□□ -0.12
SHMT2-229ENST00000557348 UBA7P41226 1012 aa14.28□□□□□ -0.12
SHMT2-229ENST00000557348 CBX1P83916 185 aa14.28□□□□□ -0.12
SHMT2-229ENST00000557348 MYL5Q02045 173 aa14.28□□□□□ -0.12
SHMT2-229ENST00000557348 CDC37Q16543 378 aaPredicted RBP14.28□□□□□ -0.12
SHMT2-229ENST00000557348 TMEM266Q2M3C6 531 aa14.28□□□□□ -0.12
SHMT2-229ENST00000557348 LETM2Q2VYF4 491 aa14.28□□□□□ -0.12
SHMT2-229ENST00000557348 SYDE2Q5VT97 1194 aa14.28□□□□□ -0.12
SHMT2-229ENST00000557348 PPP4R3AQ6IN85 833 aa14.28□□□□□ -0.12
SHMT2-229ENST00000557348 SH3RF1Q7Z6J0 888 aa14.28□□□□□ -0.12
SHMT2-229ENST00000557348 SIAH1Q8IUQ4 282 aa14.28□□□□□ -0.12
SHMT2-229ENST00000557348 DHX58Q96C10 678 aa14.28□□□□□ -0.12
SHMT2-229ENST00000557348 EPSTI1Q96J88 318 aa14.28□□□□□ -0.12
SHMT2-229ENST00000557348 PSTPIP2Q9H939 334 aa14.28□□□□□ -0.12
SHMT2-229ENST00000557348 RMND1Q9NWS8 449 aa14.28□□□□□ -0.12
SHMT2-229ENST00000557348 USP17L10C9JJH3 530 aa14.27□□□□□ -0.12
SHMT2-229ENST00000557348 WNT7AO00755 349 aa14.27□□□□□ -0.12
SHMT2-229ENST00000557348 SLC26A4O43511 780 aa14.27□□□□□ -0.12
SHMT2-229ENST00000557348 CLK2P49760 499 aaKnown RBP14.27□□□□□ -0.12
SHMT2-229ENST00000557348 IKQ13123 557 aaPredicted RBP14.27□□□□□ -0.12
SHMT2-229ENST00000557348 QRICH1Q2TAL8 776 aa14.27□□□□□ -0.12
SHMT2-229ENST00000557348 MOXD1Q6UVY6 613 aa14.27□□□□□ -0.12
SHMT2-229ENST00000557348 FAM160B2Q86V87 743 aa14.27□□□□□ -0.12
SHMT2-229ENST00000557348 PDILTQ8N807 584 aa14.27□□□□□ -0.12
SHMT2-229ENST00000557348 CHURC1Q8WUH1 139 aa14.27□□□□□ -0.12
SHMT2-229ENST00000557348 COA7Q96BR5 231 aa14.27□□□□□ -0.12
SHMT2-229ENST00000557348 TTC12Q9H892 705 aaPredicted RBP14.27□□□□□ -0.12
SHMT2-229ENST00000557348 BIN2Q9UBW5 565 aaPredicted RBP14.27□□□□□ -0.12
SHMT2-229ENST00000557348 DDX41Q9UJV9 622 aaKnown RBP14.27□□□□□ -0.12
SHMT2-229ENST00000557348 BAZ2BQ9UIF8 2168 aaKnown RBP14.27□□□□□ -0.13
SHMT2-229ENST00000557348 GTPBP6O43824 516 aaPredicted RBP14.26□□□□□ -0.13
SHMT2-229ENST00000557348 RAD21O60216 631 aa14.26□□□□□ -0.13
SHMT2-229ENST00000557348 ERCC5P28715 1186 aaPredicted RBP14.26□□□□□ -0.13
SHMT2-229ENST00000557348 HOXA7P31268 230 aaPredicted RBP14.26□□□□□ -0.13
SHMT2-229ENST00000557348 CAP2P40123 477 aa14.26□□□□□ -0.13
SHMT2-229ENST00000557348 STAT2P52630 851 aa14.26□□□□□ -0.13
SHMT2-229ENST00000557348 MORC3Q14149 939 aa14.26□□□□□ -0.13
SHMT2-229ENST00000557348 E2F4Q16254 413 aa14.26□□□□□ -0.13
SHMT2-229ENST00000557348 TTBK2Q6IQ55 1244 aa14.26□□□□□ -0.13
SHMT2-229ENST00000557348 FBXO11Q86XK2 927 aa14.26□□□□□ -0.13
SHMT2-229ENST00000557348 RASSF8Q8NHQ8 419 aa14.26□□□□□ -0.13
SHMT2-229ENST00000557348 PAGE5Q96GU1 130 aa14.26□□□□□ -0.13
SHMT2-229ENST00000557348 DISC1Q9NRI5 854 aa14.26□□□□□ -0.13
SHMT2-229ENST00000557348 ZHX1Q9UKY1 873 aaPredicted RBP14.26□□□□□ -0.13
SHMT2-229ENST00000557348 PCDHA1Q9Y5I3 950 aa14.26□□□□□ -0.13
SHMT2-229ENST00000557348 DCAF8L1A6NGE4 600 aa14.26□□□□□ -0.13
SHMT2-229ENST00000557348 BIN1O00499 593 aa14.26□□□□□ -0.13
SHMT2-229ENST00000557348 CBFA2T2O43439 604 aa14.26□□□□□ -0.13
SHMT2-229ENST00000557348 SLC16A2P36021 539 aa14.26□□□□□ -0.13
SHMT2-229ENST00000557348 STAT6P42226 847 aa14.26□□□□□ -0.13
SHMT2-229ENST00000557348 USP11P51784 963 aa14.26□□□□□ -0.13
SHMT2-229ENST00000557348 JAKMIP3Q5VZ66 844 aa14.26□□□□□ -0.13
SHMT2-229ENST00000557348 VCPKMTQ9H867 229 aa14.26□□□□□ -0.13
SHMT2-229ENST00000557348 MAN1B1Q9UKM7 699 aa14.26□□□□□ -0.13
SHMT2-229ENST00000557348 PNMA2Q9UL42 364 aa14.26□□□□□ -0.13
SHMT2-229ENST00000557348 ARFGEF1Q9Y6D6 1849 aa14.25□□□□□ -0.13
SHMT2-229ENST00000557348 TMEM232C9JQI7 657 aa14.25□□□□□ -0.13
SHMT2-229ENST00000557348 FXR2P51116 673 aaKnown RBP eCLIP14.25□□□□□ -0.13
SHMT2-229ENST00000557348 PDIA5Q14554 519 aa14.25□□□□□ -0.13
SHMT2-229ENST00000557348 RRAGBQ5VZM2 374 aa14.25□□□□□ -0.13
SHMT2-229ENST00000557348 DCAF15Q66K64 600 aa14.25□□□□□ -0.13
SHMT2-229ENST00000557348 USP49Q70CQ1 688 aa14.25□□□□□ -0.13
SHMT2-229ENST00000557348 DRC7Q8IY82 874 aa14.25□□□□□ -0.13
SHMT2-229ENST00000557348 ERCC4Q92889 916 aaPredicted RBP14.25□□□□□ -0.13
SHMT2-229ENST00000557348 CCDC47Q96A33 483 aaKnown RBP14.25□□□□□ -0.13
SHMT2-229ENST00000557348 TMEM39BQ9GZU3 492 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms