RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	CPXCR1	Q8N123	301 aa		10.41	□□□□□ -0.74
SYNE2-222	ENST00000556725	MSL3	Q8N5Y2	521 aa	Known RBP	10.41	□□□□□ -0.74
SYNE2-222	ENST00000556725	PCSK9	Q8NBP7	692 aa	Known RBP	10.41	□□□□□ -0.74
SYNE2-222	ENST00000556725	IL27	Q8NEV9	243 aa		10.41	□□□□□ -0.74
SYNE2-222	ENST00000556725	VWCE	Q96DN2	955 aa		10.41	□□□□□ -0.74
SYNE2-222	ENST00000556725	DNAJC2	Q99543	621 aa	Known RBP	10.41	□□□□□ -0.74
SYNE2-222	ENST00000556725	BCL11A	Q9H165	835 aa		10.41	□□□□□ -0.74
SYNE2-222	ENST00000556725	EPHX3	Q9H6B9	360 aa		10.41	□□□□□ -0.74
SYNE2-222	ENST00000556725	KANSL2	Q9H9L4	492 aa		10.41	□□□□□ -0.74
SYNE2-222	ENST00000556725	GOPC	Q9HD26	462 aa		10.41	□□□□□ -0.74
SYNE2-222	ENST00000556725	ASTN1	O14525	1302 aa		10.4	□□□□□ -0.74
SYNE2-222	ENST00000556725	GRIN2D	O15399	1336 aa		10.4	□□□□□ -0.74
SYNE2-222	ENST00000556725	TLR3	O15455	904 aa	Known RBP	10.4	□□□□□ -0.74
SYNE2-222	ENST00000556725	COPB2	P35606	906 aa		10.4	□□□□□ -0.74
SYNE2-222	ENST00000556725	ADD2	P35612	726 aa		10.4	□□□□□ -0.74
SYNE2-222	ENST00000556725	CNTN2	Q02246	1040 aa		10.4	□□□□□ -0.74
SYNE2-222	ENST00000556725	CTR9	Q6PD62	1173 aa		10.4	□□□□□ -0.74
SYNE2-222	ENST00000556725	STK11IP	Q8N1F8	1099 aa		10.4	□□□□□ -0.74
SYNE2-222	ENST00000556725	SLC43A3	Q8NBI5	491 aa		10.4	□□□□□ -0.74
SYNE2-222	ENST00000556725	SLF1	Q9BQI6	1058 aa		10.4	□□□□□ -0.74
SYNE2-222	ENST00000556725	TEX13B	Q9BXU2	312 aa		10.4	□□□□□ -0.74
SYNE2-222	ENST00000556725	KATNBL1	Q9H079	304 aa		10.4	□□□□□ -0.74
SYNE2-222	ENST00000556725	TRPV6	Q9H1D0	765 aa		10.4	□□□□□ -0.74
SYNE2-222	ENST00000556725	ABHD16B	Q9H3Z7	469 aa		10.4	□□□□□ -0.74
SYNE2-222	ENST00000556725	HIPK3	Q9H422	1215 aa		10.4	□□□□□ -0.74
SYNE2-222	ENST00000556725	SPC25	Q9HBM1	224 aa		10.4	□□□□□ -0.74
SYNE2-222	ENST00000556725	RAVER2	Q9HCJ3	691 aa	Known RBP	10.4	□□□□□ -0.74
SYNE2-222	ENST00000556725	ATP8A2	Q9NTI2	1148 aa		10.4	□□□□□ -0.74
SYNE2-222	ENST00000556725	NCOR1	O75376	2440 aa		10.39	□□□□□ -0.75
SYNE2-222	ENST00000556725		F5H6K3	240 aa		10.39	□□□□□ -0.75
SYNE2-222	ENST00000556725	KLRC3	Q07444	240 aa		10.39	□□□□□ -0.75
SYNE2-222	ENST00000556725	TMEM63B	Q5T3F8	832 aa		10.39	□□□□□ -0.75
SYNE2-222	ENST00000556725	KRT40	Q6A162	431 aa		10.39	□□□□□ -0.75
SYNE2-222	ENST00000556725	CXCL17	Q6UXB2	119 aa		10.39	□□□□□ -0.75
SYNE2-222	ENST00000556725	ARMCX2	Q7L311	632 aa		10.39	□□□□□ -0.75
SYNE2-222	ENST00000556725	ITPRIP	Q8IWB1	547 aa		10.39	□□□□□ -0.75
SYNE2-222	ENST00000556725	CCDC144CP	Q8IYA2	1237 aa		10.39	□□□□□ -0.75
SYNE2-222	ENST00000556725	RHPN1	Q8TCX5	695 aa		10.39	□□□□□ -0.75
SYNE2-222	ENST00000556725	LRFN3	Q9BTN0	628 aa		10.39	□□□□□ -0.75
SYNE2-222	ENST00000556725	C1QTNF1	Q9BXJ1	281 aa		10.39	□□□□□ -0.75
SYNE2-222	ENST00000556725	WNT8A	Q9H1J5	351 aa		10.39	□□□□□ -0.75
SYNE2-222	ENST00000556725	BOLA2	Q9H3K6	86 aa		10.39	□□□□□ -0.75
SYNE2-222	ENST00000556725	STK24	Q9Y6E0	443 aa		10.39	□□□□□ -0.75
SYNE2-222	ENST00000556725	DDX49	Q9Y6V7	483 aa	Known RBP	10.39	□□□□□ -0.75
SYNE2-222	ENST00000556725	B4GALT4	O60513	344 aa		10.38	□□□□□ -0.75
SYNE2-222	ENST00000556725	NDUFB10	O96000	172 aa		10.38	□□□□□ -0.75
SYNE2-222	ENST00000556725	NKX3-2	P78367	333 aa		10.38	□□□□□ -0.75
SYNE2-222	ENST00000556725	ITGA7	Q13683	1181 aa		10.38	□□□□□ -0.75
SYNE2-222	ENST00000556725	SKIV2L	Q15477	1246 aa	Known RBP	10.38	□□□□□ -0.75
SYNE2-222	ENST00000556725	PPP2R2D	Q66LE6	453 aa		10.38	□□□□□ -0.75
SYNE2-222	ENST00000556725	ERC1	Q8IUD2	1116 aa		10.38	□□□□□ -0.75
SYNE2-222	ENST00000556725	ANKRD35	Q8N283	1001 aa		10.38	□□□□□ -0.75
SYNE2-222	ENST00000556725	PRPF38A	Q8NAV1	312 aa	Known RBP	10.38	□□□□□ -0.75
SYNE2-222	ENST00000556725	SCLY	Q96I15	445 aa		10.38	□□□□□ -0.75
SYNE2-222	ENST00000556725	NOC4L	Q9BVI4	516 aa	Known RBP	10.38	□□□□□ -0.75
SYNE2-222	ENST00000556725	CERS4	Q9HA82	394 aa		10.38	□□□□□ -0.75
SYNE2-222	ENST00000556725	SLC4A7	Q9Y6M7	1214 aa		10.38	□□□□□ -0.75
SYNE2-222	ENST00000556725	SLC4A4	Q9Y6R1	1079 aa		10.38	□□□□□ -0.75
SYNE2-222	ENST00000556725	EPOP	A6NHQ4	379 aa		10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	ZBBX	A8MT70	800 aa		10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	ATP2A1	O14983	1001 aa		10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	ERC2	O15083	957 aa		10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	ZBED4	O75132	1171 aa		10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	PSMC6	P62333	389 aa		10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	TNFAIP2	Q03169	654 aa		10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	NOL8	Q76FK4	1167 aa	Known RBP	10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	KIFC2	Q96AC6	838 aa		10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	AGBL1	Q96MI9	1066 aa		10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	PUS7L	Q9H0K6	701 aa	Known RBP	10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	MTIF3	Q9H2K0	278 aa	Known RBP	10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	SLC38A10	Q9HBR0	1119 aa		10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	PDGFC	Q9NRA1	345 aa		10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	HOMER2	Q9NSB8	354 aa		10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	PAG1	Q9NWQ8	432 aa		10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	NYAP2	Q9P242	653 aa		10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	CLIP2	Q9UDT6	1046 aa		10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	GNE	Q9Y223	722 aa	Known RBP	10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	PCDHA11	Q9Y5I1	949 aa		10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	MTCH2	Q9Y6C9	303 aa		10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	PRRC2B	Q5JSZ5	2229 aa	Known RBP	10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	GREB1L	Q9C091	1923 aa	Predicted RBP	10.37	□□□□□ -0.75
SYNE2-222	ENST00000556725	ZBED9	Q6R2W3	1325 aa		10.36	□□□□□ -0.75
SYNE2-222	ENST00000556725	SOWAHB	A6NEL2	793 aa		10.36	□□□□□ -0.75
SYNE2-222	ENST00000556725	DYNC1LI2	O43237	492 aa	Predicted RBP	10.36	□□□□□ -0.75
SYNE2-222	ENST00000556725	TLL1	O43897	1013 aa		10.36	□□□□□ -0.75
SYNE2-222	ENST00000556725	ARHGEF15	O94989	841 aa		10.36	□□□□□ -0.75
SYNE2-222	ENST00000556725	IFIT2	P09913	472 aa	Known RBP	10.36	□□□□□ -0.75
SYNE2-222	ENST00000556725	ATP2A2	P16615	1042 aa	Known RBP	10.36	□□□□□ -0.75
SYNE2-222	ENST00000556725	SMPD1	P17405	629 aa		10.36	□□□□□ -0.75
SYNE2-222	ENST00000556725	RASA1	P20936	1047 aa		10.36	□□□□□ -0.75
SYNE2-222	ENST00000556725	TTLL4	Q14679	1199 aa		10.36	□□□□□ -0.75
SYNE2-222	ENST00000556725	FSCN1	Q16658	493 aa	Known RBP	10.36	□□□□□ -0.75
SYNE2-222	ENST00000556725	AMOTL1	Q8IY63	956 aa		10.36	□□□□□ -0.75
SYNE2-222	ENST00000556725	FTSJ3	Q8IY81	847 aa	Known RBP	10.36	□□□□□ -0.75
SYNE2-222	ENST00000556725	CLASRP	Q8N2M8	674 aa	Known RBP	10.36	□□□□□ -0.75
SYNE2-222	ENST00000556725	FAM133A	Q8N9E0	248 aa		10.36	□□□□□ -0.75
SYNE2-222	ENST00000556725	CTDP1	Q9Y5B0	961 aa	Predicted RBP	10.36	□□□□□ -0.75
SYNE2-222	ENST00000556725	SCN5A	Q14524	2016 aa		10.36	□□□□□ -0.75

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