RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 RAB3GAP1Q15042 981 aa8.39□□□□□ -1.07
PRPF39-209ENST00000556353 AMIGO3Q86WK7 504 aa8.39□□□□□ -1.07
PRPF39-209ENST00000556353 FGD4Q96M96 766 aa8.39□□□□□ -1.07
PRPF39-209ENST00000556353 PTCHD1Q96NR3 888 aa8.39□□□□□ -1.07
PRPF39-209ENST00000556353 IRF2BPLQ9H1B7 796 aa8.39□□□□□ -1.07
PRPF39-209ENST00000556353 KLHL14Q9P2G3 628 aa8.39□□□□□ -1.07
PRPF39-209ENST00000556353 NUDT19A8MXV4 375 aa8.38□□□□□ -1.07
PRPF39-209ENST00000556353 TBC1D8O95759 1140 aa8.38□□□□□ -1.07
PRPF39-209ENST00000556353 KLHL6Q8WZ60 621 aa8.38□□□□□ -1.07
PRPF39-209ENST00000556353 RFXAPO00287 272 aa8.37□□□□□ -1.07
PRPF39-209ENST00000556353 MVKQ03426 396 aa8.37□□□□□ -1.07
PRPF39-209ENST00000556353 ZNF385BQ569K4 471 aa8.37□□□□□ -1.07
PRPF39-209ENST00000556353 KIAA1211LQ6NV74 962 aa8.37□□□□□ -1.07
PRPF39-209ENST00000556353 VHLLQ6RSH7 139 aa8.37□□□□□ -1.07
PRPF39-209ENST00000556353 TMC6Q7Z403 805 aa8.37□□□□□ -1.07
PRPF39-209ENST00000556353 FAM169BQ8N8A8 192 aa8.37□□□□□ -1.07
PRPF39-209ENST00000556353 ANAPC16Q96DE5 110 aa8.37□□□□□ -1.07
PRPF39-209ENST00000556353 CNTD2Q9H8S5 307 aa8.37□□□□□ -1.07
PRPF39-209ENST00000556353 SUGT1Q9Y2Z0 365 aa8.37□□□□□ -1.07
PRPF39-209ENST00000556353 KCTD3Q9Y597 815 aa8.37□□□□□ -1.07
PRPF39-209ENST00000556353 A0A1W2PQJ5 194 aa8.36□□□□□ -1.07
PRPF39-209ENST00000556353 N4BP3O15049 544 aa8.36□□□□□ -1.07
PRPF39-209ENST00000556353 EEF1DP3Q658K8 133 aa8.36□□□□□ -1.07
PRPF39-209ENST00000556353 RCSD1Q6JBY9 416 aa8.36□□□□□ -1.07
PRPF39-209ENST00000556353 SIGLEC10Q96LC7 697 aa8.36□□□□□ -1.07
PRPF39-209ENST00000556353 CGGBP1Q9UFW8 167 aaPredicted RBP8.36□□□□□ -1.07
PRPF39-209ENST00000556353 IRAK3Q9Y616 596 aa8.36□□□□□ -1.07
PRPF39-209ENST00000556353 ANKRD34BA5PLL1 514 aa8.35□□□□□ -1.07
PRPF39-209ENST00000556353 AURKAO14965 403 aa8.35□□□□□ -1.07
PRPF39-209ENST00000556353 MSL3P1P0C860 447 aa8.35□□□□□ -1.07
PRPF39-209ENST00000556353 ATF4P18848 351 aaPredicted RBP8.35□□□□□ -1.07
PRPF39-209ENST00000556353 ERCC5P28715 1186 aaPredicted RBP8.35□□□□□ -1.07
PRPF39-209ENST00000556353 L1CAMP32004 1257 aa8.35□□□□□ -1.07
PRPF39-209ENST00000556353 EPHB3P54753 998 aa8.35□□□□□ -1.07
PRPF39-209ENST00000556353 AMPD2Q01433 879 aa8.35□□□□□ -1.07
PRPF39-209ENST00000556353 SSPNQ14714 243 aa8.35□□□□□ -1.07
PRPF39-209ENST00000556353 CBX2Q14781 532 aaPredicted RBP8.35□□□□□ -1.07
PRPF39-209ENST00000556353 NR1I3Q14994 352 aa8.35□□□□□ -1.07
PRPF39-209ENST00000556353 RCC1LQ96I51 464 aaKnown RBP8.35□□□□□ -1.07
PRPF39-209ENST00000556353 CAPN10Q9HC96 672 aa8.35□□□□□ -1.07
PRPF39-209ENST00000556353 STXBP3O00186 592 aa8.34□□□□□ -1.07
PRPF39-209ENST00000556353 VAMP4O75379 141 aa8.34□□□□□ -1.07
PRPF39-209ENST00000556353 CORO7P57737 925 aa8.34□□□□□ -1.07
PRPF39-209ENST00000556353 GRB10Q13322 594 aa8.34□□□□□ -1.07
PRPF39-209ENST00000556353 DPY19L1Q2PZI1 675 aa8.34□□□□□ -1.07
PRPF39-209ENST00000556353 RPTNQ6XPR3 784 aa8.34□□□□□ -1.07
PRPF39-209ENST00000556353 VPS37DQ86XT2 251 aa8.34□□□□□ -1.07
PRPF39-209ENST00000556353 ARHGEF39Q8N4T4 335 aa8.34□□□□□ -1.07
PRPF39-209ENST00000556353 MCMBPQ9BTE3 642 aa8.34□□□□□ -1.07
PRPF39-209ENST00000556353 PDLIM7Q9NR12 457 aa8.34□□□□□ -1.07
PRPF39-209ENST00000556353 PI3P19957 117 aa8.33□□□□□ -1.08
PRPF39-209ENST00000556353 SEPHS1P49903 392 aa8.33□□□□□ -1.08
PRPF39-209ENST00000556353 CDR1P51861 262 aa8.33□□□□□ -1.08
PRPF39-209ENST00000556353 TCERG1LQ5VWI1 586 aa8.33□□□□□ -1.08
PRPF39-209ENST00000556353 BICRALQ6AI39 1079 aa8.33□□□□□ -1.08
PRPF39-209ENST00000556353 TMEM151BQ8IW70 566 aa8.33□□□□□ -1.08
PRPF39-209ENST00000556353 MZB1Q8WU39 189 aa8.33□□□□□ -1.08
PRPF39-209ENST00000556353 SUSD2Q9UGT4 822 aa8.33□□□□□ -1.08
PRPF39-209ENST00000556353 BACE2Q9Y5Z0 518 aa8.33□□□□□ -1.08
PRPF39-209ENST00000556353 SRGAP3O43295 1099 aa8.32□□□□□ -1.08
PRPF39-209ENST00000556353 CYBBP04839 570 aa8.32□□□□□ -1.08
PRPF39-209ENST00000556353 DBHP09172 617 aa8.32□□□□□ -1.08
PRPF39-209ENST00000556353 NAT2P11245 290 aa8.32□□□□□ -1.08
PRPF39-209ENST00000556353 MAPKAPK2P49137 400 aa8.32□□□□□ -1.08
PRPF39-209ENST00000556353 NCAPHQ15003 741 aa8.32□□□□□ -1.08
PRPF39-209ENST00000556353 PLEKHN1Q494U1 663 aaPredicted RBP8.32□□□□□ -1.08
PRPF39-209ENST00000556353 ZC3H14Q6PJT7 736 aaKnown RBP8.32□□□□□ -1.08
PRPF39-209ENST00000556353 PAQR3Q6TCH7 311 aa8.32□□□□□ -1.08
PRPF39-209ENST00000556353 LDHDQ86WU2 507 aa8.32□□□□□ -1.08
PRPF39-209ENST00000556353 NLGN2Q8NFZ4 835 aa8.32□□□□□ -1.08
PRPF39-209ENST00000556353 C2orf71A6NGG8 1288 aa8.31□□□□□ -1.08
PRPF39-209ENST00000556353 SSBP05455 408 aaKnown RBP eCLIP8.31□□□□□ -1.08
PRPF39-209ENST00000556353 TCF3P15923 654 aa8.31□□□□□ -1.08
PRPF39-209ENST00000556353 TACR1P25103 407 aa8.31□□□□□ -1.08
PRPF39-209ENST00000556353 GNL2Q13823 731 aaKnown RBP8.31□□□□□ -1.08
PRPF39-209ENST00000556353 CRACR2BQ8N4Y2 399 aaPredicted RBP8.31□□□□□ -1.08
PRPF39-209ENST00000556353 APBA2Q99767 749 aa8.31□□□□□ -1.08
PRPF39-209ENST00000556353 APEX2Q9UBZ4 518 aa8.31□□□□□ -1.08
PRPF39-209ENST00000556353 AKT3Q9Y243 479 aa8.31□□□□□ -1.08
PRPF39-209ENST00000556353 IRS4O14654 1257 aaPredicted RBP8.3□□□□□ -1.08
PRPF39-209ENST00000556353 ZNF143P52747 638 aaPredicted RBP8.3□□□□□ -1.08
PRPF39-209ENST00000556353 LCE1DQ5T752 114 aa8.3□□□□□ -1.08
PRPF39-209ENST00000556353 PANK1Q8TE04 598 aa8.3□□□□□ -1.08
PRPF39-209ENST00000556353 PCDHA5Q9Y5H7 936 aa8.3□□□□□ -1.08
PRPF39-209ENST00000556353 MRVI1Q9Y6F6 885 aa8.3□□□□□ -1.08
PRPF39-209ENST00000556353 TRBV23OR9-2A0A075B6M9 112 aa8.29□□□□□ -1.08
PRPF39-209ENST00000556353 TNNI3KQ59H18 835 aa8.29□□□□□ -1.08
PRPF39-209ENST00000556353 POMZP3Q6PJE2 187 aa8.29□□□□□ -1.08
PRPF39-209ENST00000556353 IGDCC3Q8IVU1 814 aa8.29□□□□□ -1.08
PRPF39-209ENST00000556353 ZNF513Q8N8E2 541 aaPredicted RBP8.29□□□□□ -1.08
PRPF39-209ENST00000556353 BVESQ8NE79 360 aa8.29□□□□□ -1.08
PRPF39-209ENST00000556353 NOP56O00567 594 aaKnown RBP8.28□□□□□ -1.08
PRPF39-209ENST00000556353 SMAD7O15105 426 aaKnown RBP8.28□□□□□ -1.08
PRPF39-209ENST00000556353 KCNH1O95259 989 aa8.28□□□□□ -1.08
PRPF39-209ENST00000556353 PAMP19021 973 aa8.28□□□□□ -1.08
PRPF39-209ENST00000556353 NCKAP1LP55160 1127 aa8.28□□□□□ -1.08
PRPF39-209ENST00000556353 ZNF200P98182 395 aaPredicted RBP8.28□□□□□ -1.08
PRPF39-209ENST00000556353 CNKSR3Q6P9H4 555 aa8.28□□□□□ -1.08
PRPF39-209ENST00000556353 CABP7Q86V35 215 aa8.28□□□□□ -1.08
PRPF39-209ENST00000556353 ACTR10Q9NZ32 417 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms