RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 DIS3L2Q8IYB7 885 aaKnown RBP12.84□□□□□ -0.35
SHMT2-220ENST00000555634 SAMD3Q8N6K7 520 aa12.84□□□□□ -0.35
SHMT2-220ENST00000555634 BRI3BPQ8WY22 251 aa12.84□□□□□ -0.35
SHMT2-220ENST00000555634 MS4A4AQ96JQ5 239 aa12.84□□□□□ -0.35
SHMT2-220ENST00000555634 CAPNS2Q96L46 248 aa12.84□□□□□ -0.35
SHMT2-220ENST00000555634 PHF20Q9BVI0 1012 aa12.84□□□□□ -0.35
SHMT2-220ENST00000555634 FOXP1Q9H334 677 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-220ENST00000555634 PSTPIP2Q9H939 334 aa12.84□□□□□ -0.35
SHMT2-220ENST00000555634 PCDHA4Q9UN74 947 aa12.84□□□□□ -0.35
SHMT2-220ENST00000555634 RABGAP1Q9Y3P9 1069 aa12.84□□□□□ -0.35
SHMT2-220ENST00000555634 MYH7BA7E2Y1 1941 aa12.84□□□□□ -0.35
SHMT2-220ENST00000555634 TCHHQ07283 1943 aa12.84□□□□□ -0.35
SHMT2-220ENST00000555634 SPDYE3A6NKU9 549 aa12.83□□□□□ -0.36
SHMT2-220ENST00000555634 BTBD19C9JJ37 291 aa12.83□□□□□ -0.36
SHMT2-220ENST00000555634 GOLGA6L22H0YM25 854 aa12.83□□□□□ -0.36
SHMT2-220ENST00000555634 ATP2A1O14983 1001 aa12.83□□□□□ -0.36
SHMT2-220ENST00000555634 CAPN15O75808 1086 aa12.83□□□□□ -0.36
SHMT2-220ENST00000555634 SLC25A27O95847 323 aa12.83□□□□□ -0.36
SHMT2-220ENST00000555634 F13A1P00488 732 aa12.83□□□□□ -0.36
SHMT2-220ENST00000555634 AP3B2Q13367 1082 aa12.83□□□□□ -0.36
SHMT2-220ENST00000555634 CYP4F22Q6NT55 531 aa12.83□□□□□ -0.36
SHMT2-220ENST00000555634 KRT25Q7Z3Z0 450 aa12.83□□□□□ -0.36
SHMT2-220ENST00000555634 BLIDQ8IZY5 108 aa12.83□□□□□ -0.36
SHMT2-220ENST00000555634 DAGLBQ8NCG7 672 aa12.83□□□□□ -0.36
SHMT2-220ENST00000555634 COA7Q96BR5 231 aa12.83□□□□□ -0.36
SHMT2-220ENST00000555634 AIFM3Q96NN9 605 aa12.83□□□□□ -0.36
SHMT2-220ENST00000555634 MPHOSPH6Q99547 160 aaKnown RBP12.83□□□□□ -0.36
SHMT2-220ENST00000555634 MAF1Q9H063 256 aa12.83□□□□□ -0.36
SHMT2-220ENST00000555634 ZMYND12Q9H0C1 365 aa12.83□□□□□ -0.36
SHMT2-220ENST00000555634 ACAD9Q9H845 621 aa12.83□□□□□ -0.36
SHMT2-220ENST00000555634 RAVER2Q9HCJ3 691 aaKnown RBP12.83□□□□□ -0.36
SHMT2-220ENST00000555634 RIC8AQ9NPQ8 531 aa12.83□□□□□ -0.36
SHMT2-220ENST00000555634 HOMER2Q9NSB8 354 aa12.83□□□□□ -0.36
SHMT2-220ENST00000555634 KCNJ14Q9UNX9 436 aa12.83□□□□□ -0.36
SHMT2-220ENST00000555634 PFASO15067 1338 aa12.83□□□□□ -0.36
SHMT2-220ENST00000555634 TESPA1A2RU30 521 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-220ENST00000555634 GCOM1H8Y6P7 765 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-220ENST00000555634 BRD1O95696 1058 aa12.82□□□□□ -0.36
SHMT2-220ENST00000555634 FOSP01100 380 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-220ENST00000555634 POLR2MP0CAP2 368 aa12.82□□□□□ -0.36
SHMT2-220ENST00000555634 NCLP19338 710 aaKnown RBP12.82□□□□□ -0.36
SHMT2-220ENST00000555634 STAT3P40763 770 aa12.82□□□□□ -0.36
SHMT2-220ENST00000555634 SNAP25P60880 206 aa12.82□□□□□ -0.36
SHMT2-220ENST00000555634 FOXD4L5Q5VV16 416 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-220ENST00000555634 GPAT2Q6NUI2 795 aa12.82□□□□□ -0.36
SHMT2-220ENST00000555634 IFNL1Q8IU54 200 aa12.82□□□□□ -0.36
SHMT2-220ENST00000555634 NOSTRINQ8IVI9 506 aa12.82□□□□□ -0.36
SHMT2-220ENST00000555634 CHST13Q8NET6 341 aa12.82□□□□□ -0.36
SHMT2-220ENST00000555634 FOXD4L4Q8WXT5 416 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-220ENST00000555634 ZNF396Q96N95 335 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-220ENST00000555634 NAP1L4Q99733 375 aaKnown RBP12.82□□□□□ -0.36
SHMT2-220ENST00000555634 ZFYVE28Q9HCC9 887 aa12.82□□□□□ -0.36
SHMT2-220ENST00000555634 RNF146Q9NTX7 359 aa12.82□□□□□ -0.36
SHMT2-220ENST00000555634 MAP3K20Q9NYL2 800 aaKnown RBP12.82□□□□□ -0.36
SHMT2-220ENST00000555634 ADAMTS5Q9UNA0 930 aa12.82□□□□□ -0.36
SHMT2-220ENST00000555634 MTMR6Q9Y217 621 aa12.82□□□□□ -0.36
SHMT2-220ENST00000555634 IVNS1ABPQ9Y6Y0 642 aa12.82□□□□□ -0.36
SHMT2-220ENST00000555634 ZNFX1Q9P2E3 1918 aaKnown RBP12.82□□□□□ -0.36
SHMT2-220ENST00000555634 CFBP00751 764 aa12.81□□□□□ -0.36
SHMT2-220ENST00000555634 DDIT3P35638 169 aa12.81□□□□□ -0.36
SHMT2-220ENST00000555634 KRT85P78386 507 aa12.81□□□□□ -0.36
SHMT2-220ENST00000555634 KIF23Q02241 960 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-220ENST00000555634 MOGSQ13724 837 aa12.81□□□□□ -0.36
SHMT2-220ENST00000555634 WDR78Q5VTH9 848 aa12.81□□□□□ -0.36
SHMT2-220ENST00000555634 FERMT3Q86UX7 667 aa12.81□□□□□ -0.36
SHMT2-220ENST00000555634 NCAPG2Q86XI2 1143 aa12.81□□□□□ -0.36
SHMT2-220ENST00000555634 FAM43AQ8N2R8 423 aa12.81□□□□□ -0.36
SHMT2-220ENST00000555634 GPRC5AQ8NFJ5 357 aa12.81□□□□□ -0.36
SHMT2-220ENST00000555634 TRERF1Q96PN7 1200 aa12.81□□□□□ -0.36
SHMT2-220ENST00000555634 SPATC1LQ9H0A9 340 aa12.81□□□□□ -0.36
SHMT2-220ENST00000555634 MROH8Q9H579 483 aa12.81□□□□□ -0.36
SHMT2-220ENST00000555634 CFAP45Q9UL16 551 aa12.81□□□□□ -0.36
SHMT2-220ENST00000555634 CEP131Q9UPN4 1083 aa12.81□□□□□ -0.36
SHMT2-220ENST00000555634 SMCHD1A6NHR9 2005 aa12.81□□□□□ -0.36
SHMT2-220ENST00000555634 FAM155AB1AL88 458 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-220ENST00000555634 B4DLN1 442 aa12.8□□□□□ -0.36
SHMT2-220ENST00000555634 PPP1R11O60927 126 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-220ENST00000555634 DTNBO60941 627 aa12.8□□□□□ -0.36
SHMT2-220ENST00000555634 CYP2C8P10632 490 aa12.8□□□□□ -0.36
SHMT2-220ENST00000555634 MAP2K2P36507 400 aa12.8□□□□□ -0.36
SHMT2-220ENST00000555634 ERVK-9P63128 1117 aa12.8□□□□□ -0.36
SHMT2-220ENST00000555634 ERVK-24P63145 666 aa12.8□□□□□ -0.36
SHMT2-220ENST00000555634 TMEM132BQ14DG7 1078 aa12.8□□□□□ -0.36
SHMT2-220ENST00000555634 NONOQ15233 471 aaKnown RBP eCLIP12.8□□□□□ -0.36
SHMT2-220ENST00000555634 FAM110CQ1W6H9 321 aa12.8□□□□□ -0.36
SHMT2-220ENST00000555634 SLC35G1Q2M3R5 365 aa12.8□□□□□ -0.36
SHMT2-220ENST00000555634 RILPL1Q5EBL4 403 aa12.8□□□□□ -0.36
SHMT2-220ENST00000555634 ATL3Q6DD88 541 aa12.8□□□□□ -0.36
SHMT2-220ENST00000555634 RNF207Q6ZRF8 634 aa12.8□□□□□ -0.36
SHMT2-220ENST00000555634 RIOX2Q8IUF8 465 aa12.8□□□□□ -0.36
SHMT2-220ENST00000555634 SHCBP1Q8NEM2 672 aa12.8□□□□□ -0.36
SHMT2-220ENST00000555634 AGBL1Q96MI9 1066 aa12.8□□□□□ -0.36
SHMT2-220ENST00000555634 P2RX7Q99572 595 aaKnown RBP12.8□□□□□ -0.36
SHMT2-220ENST00000555634 BEGAINQ9BUH8 593 aa12.8□□□□□ -0.36
SHMT2-220ENST00000555634 ZNF214Q9UL59 606 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-220ENST00000555634 CASP8AP2Q9UKL3 1982 aa12.8□□□□□ -0.36
SHMT2-220ENST00000555634 PIK3CDO00329 1044 aa12.79□□□□□ -0.36
SHMT2-220ENST00000555634 BMP15O95972 392 aa12.79□□□□□ -0.36
SHMT2-220ENST00000555634 U2AF2P26368 475 aaKnown RBP eCLIP12.79□□□□□ -0.36
SHMT2-220ENST00000555634 TM4SF4P48230 202 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms