RNA–Protein interactions for RNA: ENST00000554685.2

SHOX2-206, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-206ENST00000554685 SNAP25P60880 206 aa16.47■□□□□ 0.23
SHOX2-206ENST00000554685 TKFCQ3LXA3 575 aa16.47■□□□□ 0.23
SHOX2-206ENST00000554685 GPAT2Q6NUI2 795 aa16.47■□□□□ 0.23
SHOX2-206ENST00000554685 CLEC17AQ6ZS10 378 aa16.47■□□□□ 0.23
SHOX2-206ENST00000554685 KRT25Q7Z3Z0 450 aa16.47■□□□□ 0.23
SHOX2-206ENST00000554685 REXO1Q8N1G1 1221 aaKnown RBP16.47■□□□□ 0.23
SHOX2-206ENST00000554685 SAMD3Q8N6K7 520 aa16.47■□□□□ 0.23
SHOX2-206ENST00000554685 SHISA4Q96DD7 197 aa16.47■□□□□ 0.23
SHOX2-206ENST00000554685 MAF1Q9H063 256 aa16.47■□□□□ 0.23
SHOX2-206ENST00000554685 ASCC2Q9H1I8 757 aaPredicted RBP16.47■□□□□ 0.23
SHOX2-206ENST00000554685 PSTPIP2Q9H939 334 aa16.47■□□□□ 0.23
SHOX2-206ENST00000554685 ZCCHC17Q9NP64 241 aaKnown RBP16.47■□□□□ 0.23
SHOX2-206ENST00000554685 NOL7Q9UMY1 257 aaKnown RBP16.47■□□□□ 0.23
SHOX2-206ENST00000554685 BAZ2BQ9UIF8 2168 aaKnown RBP16.46■□□□□ 0.23
SHOX2-206ENST00000554685 CCDC194A0A1B0GVG4 234 aa16.46■□□□□ 0.23
SHOX2-206ENST00000554685 TESPA1A2RU30 521 aaPredicted RBP16.46■□□□□ 0.23
SHOX2-206ENST00000554685 GOLGA6L22H0YM25 854 aa16.46■□□□□ 0.23
SHOX2-206ENST00000554685 COPB2P35606 906 aa16.46■□□□□ 0.23
SHOX2-206ENST00000554685 HERVK_113P62684 666 aa16.46■□□□□ 0.23
SHOX2-206ENST00000554685 MKRN3Q13064 507 aaKnown RBP16.46■□□□□ 0.23
SHOX2-206ENST00000554685 NPY5RQ15761 445 aa16.46■□□□□ 0.23
SHOX2-206ENST00000554685 CSPP1Q1MSJ5 1256 aa16.46■□□□□ 0.23
SHOX2-206ENST00000554685 MCF2L2Q86YR7 1114 aa16.46■□□□□ 0.23
SHOX2-206ENST00000554685 BRI3BPQ8WY22 251 aa16.46■□□□□ 0.23
SHOX2-206ENST00000554685 TEX13BQ9BXU2 312 aa16.46■□□□□ 0.23
SHOX2-206ENST00000554685 CREBZFQ9NS37 354 aa16.46■□□□□ 0.23
SHOX2-206ENST00000554685 CFAP45Q9UL16 551 aa16.46■□□□□ 0.23
SHOX2-206ENST00000554685 ZNF536O15090 1300 aa16.45■□□□□ 0.22
SHOX2-206ENST00000554685 KIF28PB7ZC32 967 aa16.45■□□□□ 0.22
SHOX2-206ENST00000554685 PDHXO00330 501 aa16.45■□□□□ 0.22
SHOX2-206ENST00000554685 APLP1P51693 650 aa16.45■□□□□ 0.22
SHOX2-206ENST00000554685 KRT85P78386 507 aa16.45■□□□□ 0.22
SHOX2-206ENST00000554685 SREBF2Q12772 1141 aa16.45■□□□□ 0.22
SHOX2-206ENST00000554685 RILPL1Q5EBL4 403 aa16.45■□□□□ 0.22
SHOX2-206ENST00000554685 MYSM1Q5VVJ2 828 aa16.45■□□□□ 0.22
SHOX2-206ENST00000554685 CPXCR1Q8N123 301 aa16.45■□□□□ 0.22
SHOX2-206ENST00000554685 REPS2Q8NFH8 660 aa16.45■□□□□ 0.22
SHOX2-206ENST00000554685 RAVER2Q9HCJ3 691 aaKnown RBP16.45■□□□□ 0.22
SHOX2-206ENST00000554685 MAP3K20Q9NYL2 800 aaKnown RBP16.45■□□□□ 0.22
SHOX2-206ENST00000554685 BTBD19C9JJ37 291 aa16.44■□□□□ 0.22
SHOX2-206ENST00000554685 M0R2N6 131 aa16.44■□□□□ 0.22
SHOX2-206ENST00000554685 BAG4O95429 457 aaKnown RBP16.44■□□□□ 0.22
SHOX2-206ENST00000554685 FOSP01100 380 aaPredicted RBP16.44■□□□□ 0.22
SHOX2-206ENST00000554685 ALAS1P13196 640 aa16.44■□□□□ 0.22
SHOX2-206ENST00000554685 TRAPPC10P48553 1259 aa16.44■□□□□ 0.22
SHOX2-206ENST00000554685 NR5A1Q13285 461 aa16.44■□□□□ 0.22
SHOX2-206ENST00000554685 AP3B2Q13367 1082 aa16.44■□□□□ 0.22
SHOX2-206ENST00000554685 SNRNP48Q6IEG0 339 aaKnown RBP16.44■□□□□ 0.22
SHOX2-206ENST00000554685 OXER1Q8TDS5 423 aa16.44■□□□□ 0.22
SHOX2-206ENST00000554685 TNFRSF25Q93038 417 aa16.44■□□□□ 0.22
SHOX2-206ENST00000554685 AGBL1Q96MI9 1066 aa16.44■□□□□ 0.22
SHOX2-206ENST00000554685 PARK7Q99497 189 aaKnown RBP16.44■□□□□ 0.22
SHOX2-206ENST00000554685 P2RX7Q99572 595 aaKnown RBP16.44■□□□□ 0.22
SHOX2-206ENST00000554685 ZNF214Q9UL59 606 aaPredicted RBP16.44■□□□□ 0.22
SHOX2-206ENST00000554685 PCDHA6Q9UN73 950 aa16.44■□□□□ 0.22
SHOX2-206ENST00000554685 RABGAP1Q9Y3P9 1069 aa16.44■□□□□ 0.22
SHOX2-206ENST00000554685 PCDHA8Q9Y5H6 950 aa16.44■□□□□ 0.22
SHOX2-206ENST00000554685 PIK3CDO00329 1044 aa16.43■□□□□ 0.22
SHOX2-206ENST00000554685 NCLP19338 710 aaKnown RBP16.43■□□□□ 0.22
SHOX2-206ENST00000554685 STAT3P40763 770 aa16.43■□□□□ 0.22
SHOX2-206ENST00000554685 GCLCP48506 637 aaPredicted RBP16.43■□□□□ 0.22
SHOX2-206ENST00000554685 TMEM132BQ14DG7 1078 aa16.43■□□□□ 0.22
SHOX2-206ENST00000554685 NONOQ15233 471 aaKnown RBP eCLIP16.43■□□□□ 0.22
SHOX2-206ENST00000554685 REM2Q8IYK8 340 aaPredicted RBP16.43■□□□□ 0.22
SHOX2-206ENST00000554685 SMCR8Q8TEV9 937 aaPredicted RBP16.43■□□□□ 0.22
SHOX2-206ENST00000554685 SCAND2PQ9GZW5 306 aaPredicted RBP16.43■□□□□ 0.22
SHOX2-206ENST00000554685 EHMT1Q9H9B1 1298 aa16.43■□□□□ 0.22
SHOX2-206ENST00000554685 FBXO40Q9UH90 709 aa16.43■□□□□ 0.22
SHOX2-206ENST00000554685 PARP14Q460N5 1801 aa16.42■□□□□ 0.22
SHOX2-206ENST00000554685 FAM155AB1AL88 458 aaPredicted RBP16.42■□□□□ 0.22
SHOX2-206ENST00000554685 GCOM1H8Y6P7 765 aaPredicted RBP16.42■□□□□ 0.22
SHOX2-206ENST00000554685 SLC25A27O95847 323 aa16.42■□□□□ 0.22
SHOX2-206ENST00000554685 POLR2MP0CAP2 368 aa16.42■□□□□ 0.22
SHOX2-206ENST00000554685 PTMSP20962 102 aa16.42■□□□□ 0.22
SHOX2-206ENST00000554685 CLK2P49760 499 aaKnown RBP16.42■□□□□ 0.22
SHOX2-206ENST00000554685 DNM1Q05193 864 aaKnown RBP16.42■□□□□ 0.22
SHOX2-206ENST00000554685 PLS1Q14651 629 aa16.42■□□□□ 0.22
SHOX2-206ENST00000554685 FOXD4L6Q3SYB3 417 aaPredicted RBP16.42■□□□□ 0.22
SHOX2-206ENST00000554685 FOXD4L3Q6VB84 417 aaPredicted RBP16.42■□□□□ 0.22
SHOX2-206ENST00000554685 PIK3AP1Q6ZUJ8 805 aa16.42■□□□□ 0.22
SHOX2-206ENST00000554685 PAXIP1Q6ZW49 1069 aaPredicted RBP16.42■□□□□ 0.22
SHOX2-206ENST00000554685 CHST13Q8NET6 341 aa16.42■□□□□ 0.22
SHOX2-206ENST00000554685 RNF146Q9NTX7 359 aa16.42■□□□□ 0.22
SHOX2-206ENST00000554685 CEP131Q9UPN4 1083 aa16.42■□□□□ 0.22
SHOX2-206ENST00000554685 RLFQ13129 1914 aa16.41■□□□□ 0.22
SHOX2-206ENST00000554685 RASSF10A6NK89 507 aa16.41■□□□□ 0.22
SHOX2-206ENST00000554685 SPDYE3A6NKU9 549 aa16.41■□□□□ 0.22
SHOX2-206ENST00000554685 BMP15O95972 392 aa16.41■□□□□ 0.22
SHOX2-206ENST00000554685 CCNA1P78396 465 aa16.41■□□□□ 0.22
SHOX2-206ENST00000554685 GHRHRQ02643 423 aa16.41■□□□□ 0.22
SHOX2-206ENST00000554685 NOGQ13253 232 aa16.41■□□□□ 0.22
SHOX2-206ENST00000554685 DEFB115Q30KQ5 88 aa16.41■□□□□ 0.22
SHOX2-206ENST00000554685 RIOX2Q8IUF8 465 aa16.41■□□□□ 0.22
SHOX2-206ENST00000554685 TRERF1Q96PN7 1200 aa16.41■□□□□ 0.22
SHOX2-206ENST00000554685 NAP1L4Q99733 375 aaKnown RBP16.41■□□□□ 0.22
SHOX2-206ENST00000554685 SPATC1LQ9H0A9 340 aa16.41■□□□□ 0.22
SHOX2-206ENST00000554685 ACAD9Q9H845 621 aa16.41■□□□□ 0.22
SHOX2-206ENST00000554685 BIN2Q9UBW5 565 aaPredicted RBP16.41■□□□□ 0.22
SHOX2-206ENST00000554685 A0A0G2JMZ2 1700 aa16.41■□□□□ 0.22
SHOX2-206ENST00000554685 DDX11L8A8MPP1 907 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms