RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 C11orf16Q9NQ32 467 aa16.82■□□□□ 0.28
SHMT2-208ENST00000553868 GPHNQ9NQX3 736 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-208ENST00000553868 CHD7Q9P2D1 2997 aa16.81■□□□□ 0.28
SHMT2-208ENST00000553868 KBTBD13C9JR72 458 aa16.81■□□□□ 0.28
SHMT2-208ENST00000553868 MSCO60682 206 aa16.81■□□□□ 0.28
SHMT2-208ENST00000553868 PDIA4P13667 645 aaKnown RBP16.81■□□□□ 0.28
SHMT2-208ENST00000553868 PPP2R5BQ15173 497 aa16.81■□□□□ 0.28
SHMT2-208ENST00000553868 SEC23AQ15436 765 aa16.81■□□□□ 0.28
SHMT2-208ENST00000553868 APOA5Q6Q788 366 aa16.81■□□□□ 0.28
SHMT2-208ENST00000553868 CATIPQ7Z7H3 387 aa16.81■□□□□ 0.28
SHMT2-208ENST00000553868 METTL16Q86W50 562 aaKnown RBP16.81■□□□□ 0.28
SHMT2-208ENST00000553868 ENAHQ8N8S7 591 aaPredicted RBP16.81■□□□□ 0.28
SHMT2-208ENST00000553868 NECAB1Q8N987 351 aa16.81■□□□□ 0.28
SHMT2-208ENST00000553868 KHSRPQ92945 711 aaKnown RBP eCLIP16.81■□□□□ 0.28
SHMT2-208ENST00000553868 PBX4Q9BYU1 374 aa16.81■□□□□ 0.28
SHMT2-208ENST00000553868 BRPF3Q9ULD4 1205 aa16.81■□□□□ 0.28
SHMT2-208ENST00000553868 KIF3AQ9Y496 699 aa16.81■□□□□ 0.28
SHMT2-208ENST00000553868 PLIN4Q96Q06 1357 aa16.8■□□□□ 0.28
SHMT2-208ENST00000553868 CCDC196A0A1B0GTZ2 297 aa16.8■□□□□ 0.28
SHMT2-208ENST00000553868 USP17L5A8MUK1 530 aa16.8■□□□□ 0.28
SHMT2-208ENST00000553868 CPLX1O14810 134 aa16.8■□□□□ 0.28
SHMT2-208ENST00000553868 HOXA7P31268 230 aaPredicted RBP16.8■□□□□ 0.28
SHMT2-208ENST00000553868 METAP2P50579 478 aaKnown RBP eCLIP16.8■□□□□ 0.283e-6■■■■□ 25.7
SHMT2-208ENST00000553868 NUCB2P80303 420 aa16.8■□□□□ 0.28
SHMT2-208ENST00000553868 ARRDC4Q8NCT1 418 aa16.8■□□□□ 0.28
SHMT2-208ENST00000553868 NPLOC4Q8TAT6 608 aa16.8■□□□□ 0.28
SHMT2-208ENST00000553868 ANKS1AQ92625 1134 aa16.8■□□□□ 0.28
SHMT2-208ENST00000553868 GOLGA8AA7E2F4 631 aa16.79■□□□□ 0.28
SHMT2-208ENST00000553868 TBC1D12O60347 775 aa16.79■□□□□ 0.28
SHMT2-208ENST00000553868 CDKL5O76039 1030 aa16.79■□□□□ 0.28
SHMT2-208ENST00000553868 DDAH1O94760 285 aa16.79■□□□□ 0.28
SHMT2-208ENST00000553868 SHMT1P34896 483 aa16.79■□□□□ 0.28
SHMT2-208ENST00000553868 DDIT3P35638 169 aa16.79■□□□□ 0.28
SHMT2-208ENST00000553868 CAP2P40123 477 aa16.79■□□□□ 0.28
SHMT2-208ENST00000553868 HMGN5P82970 282 aaKnown RBP16.79■□□□□ 0.28
SHMT2-208ENST00000553868 ATP2B2Q01814 1243 aa16.79■□□□□ 0.28
SHMT2-208ENST00000553868 FPGSQ05932 587 aa16.79■□□□□ 0.28
SHMT2-208ENST00000553868 SCRN1Q12765 414 aa16.79■□□□□ 0.28
SHMT2-208ENST00000553868 WDR78Q5VTH9 848 aa16.79■□□□□ 0.28
SHMT2-208ENST00000553868 ZNF654Q8IZM8 581 aa16.79■□□□□ 0.28
SHMT2-208ENST00000553868 MICALL1Q8N3F8 863 aa16.79■□□□□ 0.28
SHMT2-208ENST00000553868 KAT14Q9H8E8 782 aa16.79■□□□□ 0.28
SHMT2-208ENST00000553868 CXXC1Q9P0U4 656 aaPredicted RBP16.79■□□□□ 0.28
SHMT2-208ENST00000553868 NID2Q14112 1375 aa16.78■□□□□ 0.28
SHMT2-208ENST00000553868 CLTBP09497 229 aa16.78■□□□□ 0.28
SHMT2-208ENST00000553868 CYBAP13498 195 aa16.78■□□□□ 0.28
SHMT2-208ENST00000553868 RAG1P15918 1043 aa16.78■□□□□ 0.28
SHMT2-208ENST00000553868 PDCP20941 246 aa16.78■□□□□ 0.28
SHMT2-208ENST00000553868 MRE11P49959 708 aa16.78■□□□□ 0.28
SHMT2-208ENST00000553868 CCT2P78371 535 aaKnown RBP16.78■□□□□ 0.28
SHMT2-208ENST00000553868 JAG1P78504 1218 aa16.78■□□□□ 0.28
SHMT2-208ENST00000553868 SHROOM1Q2M3G4 852 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-208ENST00000553868 CERKLQ49MI3 558 aaPredicted RBP16.78■□□□□ 0.28
SHMT2-208ENST00000553868 MICU3Q86XE3 530 aa16.78■□□□□ 0.28
SHMT2-208ENST00000553868 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.78■□□□□ 0.288e-8■■□□□ 12.4
SHMT2-208ENST00000553868 TMOD4Q9NZQ9 345 aa16.78■□□□□ 0.28
SHMT2-208ENST00000553868 CNMDO75829 334 aa16.77■□□□□ 0.28
SHMT2-208ENST00000553868 BACE1P56817 501 aa16.77■□□□□ 0.28
SHMT2-208ENST00000553868 ST3GAL1Q11201 340 aa16.77■□□□□ 0.28
SHMT2-208ENST00000553868 RTN1Q16799 776 aa16.77■□□□□ 0.28
SHMT2-208ENST00000553868 TATDN1Q6P1N9 297 aa16.77■□□□□ 0.28
SHMT2-208ENST00000553868 RBM28Q9NW13 759 aaKnown RBP16.77■□□□□ 0.28
SHMT2-208ENST00000553868 MPHOSPH10O00566 681 aaKnown RBP16.76■□□□□ 0.27
SHMT2-208ENST00000553868 KIAA0355O15063 1070 aa16.76■□□□□ 0.27
SHMT2-208ENST00000553868 PQBP1O60828 265 aaKnown RBP16.76■□□□□ 0.27
SHMT2-208ENST00000553868 TOP1P11387 765 aaKnown RBP16.76■□□□□ 0.27
SHMT2-208ENST00000553868 AKR1B1P15121 316 aa16.76■□□□□ 0.27
SHMT2-208ENST00000553868 GJB2P29033 226 aa16.76■□□□□ 0.27
SHMT2-208ENST00000553868 KIF5BP33176 963 aa16.76■□□□□ 0.27
SHMT2-208ENST00000553868 LRRC41Q15345 812 aa16.76■□□□□ 0.27
SHMT2-208ENST00000553868 TMEM179Q6ZVK1 233 aa16.76■□□□□ 0.27
SHMT2-208ENST00000553868 FAM184AQ8NB25 1140 aa16.76■□□□□ 0.27
SHMT2-208ENST00000553868 CTCFLQ8NI51 663 aaPredicted RBP16.76■□□□□ 0.27
SHMT2-208ENST00000553868 NUP133Q8WUM0 1156 aa16.76■□□□□ 0.27
SHMT2-208ENST00000553868 MAP3K14Q99558 947 aa16.76■□□□□ 0.27
SHMT2-208ENST00000553868 AS3MTQ9HBK9 375 aa16.76■□□□□ 0.27
SHMT2-208ENST00000553868 SENP2Q9HC62 589 aa16.76■□□□□ 0.27
SHMT2-208ENST00000553868 CABP5Q9NP86 173 aa16.76■□□□□ 0.27
SHMT2-208ENST00000553868 IL17RBQ9NRM6 502 aa16.76■□□□□ 0.27
SHMT2-208ENST00000553868 STX8Q9UNK0 236 aa16.76■□□□□ 0.27
SHMT2-208ENST00000553868 NMT2O60551 498 aa16.75■□□□□ 0.27
SHMT2-208ENST00000553868 PTPREP23469 700 aa16.75■□□□□ 0.27
SHMT2-208ENST00000553868 PRAMEF19Q5SWL8 479 aa16.75■□□□□ 0.27
SHMT2-208ENST00000553868 C1orf53Q5VUE5 145 aa16.75■□□□□ 0.27
SHMT2-208ENST00000553868 RCSD1Q6JBY9 416 aa16.75■□□□□ 0.27
SHMT2-208ENST00000553868 FANCBQ8NB91 859 aa16.75■□□□□ 0.27
SHMT2-208ENST00000553868 NSUN7Q8NE18 718 aaKnown RBP16.75■□□□□ 0.27
SHMT2-208ENST00000553868 SMARCC2Q8TAQ2 1214 aa16.75■□□□□ 0.27
SHMT2-208ENST00000553868 DNAJC18Q9H819 358 aa16.75■□□□□ 0.27
SHMT2-208ENST00000553868 NCOA5Q9HCD5 579 aaKnown RBP16.75■□□□□ 0.27
SHMT2-208ENST00000553868 MTMR4Q9NYA4 1195 aa16.75■□□□□ 0.27
SHMT2-208ENST00000553868 IGKV6D-41A0A0C4DH26 115 aa16.74■□□□□ 0.27
SHMT2-208ENST00000553868 PTPDC1A2A3K4 754 aa16.74■□□□□ 0.27
SHMT2-208ENST00000553868 SLC15A5A6NIM6 579 aa16.74■□□□□ 0.27
SHMT2-208ENST00000553868 TTLL1O95922 423 aa16.74■□□□□ 0.27
SHMT2-208ENST00000553868 IGHA2P01877 340 aa16.74■□□□□ 0.27
SHMT2-208ENST00000553868 NOVP48745 357 aa16.74■□□□□ 0.27
SHMT2-208ENST00000553868 ABCB5Q2M3G0 1257 aa16.74■□□□□ 0.27
SHMT2-208ENST00000553868 C16orf59Q7L2K0 433 aa16.74■□□□□ 0.27
SHMT2-208ENST00000553868 PNMA1Q8ND90 353 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms