RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 FANCBQ8NB91 859 aa16.41■□□□□ 0.22
PTCH1-226ENST00000553011 PIGSQ96S52 555 aa16.41■□□□□ 0.22
PTCH1-226ENST00000553011 UNC93B1Q9H1C4 597 aa16.41■□□□□ 0.22
PTCH1-226ENST00000553011 A1CFQ9NQ94 594 aaKnown RBP16.41■□□□□ 0.22
PTCH1-226ENST00000553011 SLC5A4Q9NY91 659 aa16.41■□□□□ 0.22
PTCH1-226ENST00000553011 NAP1L2Q9ULW6 460 aaPredicted RBP16.41■□□□□ 0.22
PTCH1-226ENST00000553011 DNAJC25-GNG10A0A024R161 153 aa16.4■□□□□ 0.22
PTCH1-226ENST00000553011 NFIBO00712 420 aa16.4■□□□□ 0.22
PTCH1-226ENST00000553011 ZBTB5O15062 677 aa16.4■□□□□ 0.22
PTCH1-226ENST00000553011 ZBTB43O43298 467 aa16.4■□□□□ 0.22
PTCH1-226ENST00000553011 PPP1R11O60927 126 aaPredicted RBP16.4■□□□□ 0.22
PTCH1-226ENST00000553011 CCL5P13501 91 aa16.4■□□□□ 0.22
PTCH1-226ENST00000553011 ANAPC15P60006 121 aa16.4■□□□□ 0.22
PTCH1-226ENST00000553011 ZNF792Q3KQV3 632 aa16.4■□□□□ 0.22
PTCH1-226ENST00000553011 NSMFQ6X4W1 530 aa16.4■□□□□ 0.22
PTCH1-226ENST00000553011 FBXO11Q86XK2 927 aa16.4■□□□□ 0.22
PTCH1-226ENST00000553011 SRBD1Q8N5C6 995 aaKnown RBP16.4■□□□□ 0.22
PTCH1-226ENST00000553011 CLEC4DQ8WXI8 215 aa16.4■□□□□ 0.22
PTCH1-226ENST00000553011 PIBF1Q8WXW3 757 aa16.4■□□□□ 0.22
PTCH1-226ENST00000553011 MAML3Q96JK9 1138 aa16.4■□□□□ 0.22
PTCH1-226ENST00000553011 AGXT2Q9BYV1 514 aa16.4■□□□□ 0.22
PTCH1-226ENST00000553011 PNMA2Q9UL42 364 aa16.4■□□□□ 0.22
PTCH1-226ENST00000553011 GOLGA8AA7E2F4 631 aa16.39■□□□□ 0.21
PTCH1-226ENST00000553011 GOLGA8BA8MQT2 603 aa16.39■□□□□ 0.21
PTCH1-226ENST00000553011 IGHA2P01877 340 aa16.39■□□□□ 0.21
PTCH1-226ENST00000553011 PRKAR2AP13861 404 aaKnown RBP16.39■□□□□ 0.21
PTCH1-226ENST00000553011 CYP2C19P33261 490 aa16.39■□□□□ 0.21
PTCH1-226ENST00000553011 GNAQP50148 359 aa16.39■□□□□ 0.21
PTCH1-226ENST00000553011 CNTN2Q02246 1040 aa16.39■□□□□ 0.21
PTCH1-226ENST00000553011 CACNB2Q08289 660 aaPredicted RBP16.39■□□□□ 0.21
PTCH1-226ENST00000553011 TOB2Q14106 344 aaPredicted RBP16.39■□□□□ 0.21
PTCH1-226ENST00000553011 MAP3K21Q5TCX8 1036 aa16.39■□□□□ 0.21
PTCH1-226ENST00000553011 OLFML2BQ68BL8 750 aa16.39■□□□□ 0.21
PTCH1-226ENST00000553011 TMTC3Q6ZXV5 915 aa16.39■□□□□ 0.21
PTCH1-226ENST00000553011 FBXL16Q8N461 479 aa16.39■□□□□ 0.21
PTCH1-226ENST00000553011 FGD4Q96M96 766 aa16.39■□□□□ 0.21
PTCH1-226ENST00000553011 SPZ1Q9BXG8 430 aa16.39■□□□□ 0.21
PTCH1-226ENST00000553011 FRMPD3Q5JV73 1810 aa16.39■□□□□ 0.21
PTCH1-226ENST00000553011 POTEFA5A3E0 1075 aa16.38■□□□□ 0.21
PTCH1-226ENST00000553011 POTEB2H3BUK9 544 aa16.38■□□□□ 0.21
PTCH1-226ENST00000553011 BAATQ14032 418 aaPredicted RBP16.38■□□□□ 0.21
PTCH1-226ENST00000553011 RTN1Q16799 776 aa16.38■□□□□ 0.21
PTCH1-226ENST00000553011 MFSD14CQ5VZR4 134 aa16.38■□□□□ 0.21
PTCH1-226ENST00000553011 CCDC82Q8N4S0 544 aa16.38■□□□□ 0.21
PTCH1-226ENST00000553011 IL17RAQ96F46 866 aa16.38■□□□□ 0.21
PTCH1-226ENST00000553011 LZTS2Q9BRK4 669 aa16.38■□□□□ 0.21
PTCH1-226ENST00000553011 LARP6Q9BRS8 491 aaKnown RBP16.38■□□□□ 0.21
PTCH1-226ENST00000553011 AMNQ9BXJ7 453 aa16.38■□□□□ 0.21
PTCH1-226ENST00000553011 RNF208Q9H0X6 261 aa16.38■□□□□ 0.21
PTCH1-226ENST00000553011 FAM217BQ9NTX9 383 aaPredicted RBP16.38■□□□□ 0.21
PTCH1-226ENST00000553011 PDRG1Q9NUG6 133 aa16.38■□□□□ 0.21
PTCH1-226ENST00000553011 CYP39A1Q9NYL5 469 aa16.38■□□□□ 0.21
PTCH1-226ENST00000553011 DIS3Q9Y2L1 958 aaKnown RBP16.38■□□□□ 0.21
PTCH1-226ENST00000553011 PFASO15067 1338 aa16.38■□□□□ 0.21
PTCH1-226ENST00000553011 ABCB11O95342 1321 aa16.38■□□□□ 0.21
PTCH1-226ENST00000553011 PNMA6FA0A0J9YX94 578 aa16.37■□□□□ 0.21
PTCH1-226ENST00000553011 PTPDC1A2A3K4 754 aa16.37■□□□□ 0.21
PTCH1-226ENST00000553011 SMARCA1P28370 1054 aa16.37■□□□□ 0.21
PTCH1-226ENST00000553011 SLC30A10Q6XR72 485 aa16.37■□□□□ 0.21
PTCH1-226ENST00000553011 FAM133AQ8N9E0 248 aa16.37■□□□□ 0.21
PTCH1-226ENST00000553011 TBC1D5Q92609 795 aa16.37■□□□□ 0.21
PTCH1-226ENST00000553011 PURBQ96QR8 312 aaKnown RBP16.37■□□□□ 0.21
PTCH1-226ENST00000553011 TMEM106CQ9BVX2 250 aa16.37■□□□□ 0.21
PTCH1-226ENST00000553011 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.37■□□□□ 0.21
PTCH1-226ENST00000553011 RBM28Q9NW13 759 aaKnown RBP16.37■□□□□ 0.21
PTCH1-226ENST00000553011 RPTORQ8N122 1335 aa16.37■□□□□ 0.21
PTCH1-226ENST00000553011 hCG_1642624A0A1W2PR95 340 aa16.36■□□□□ 0.21
PTCH1-226ENST00000553011 SOWAHBA6NEL2 793 aa16.36■□□□□ 0.21
PTCH1-226ENST00000553011 CDC27P30260 824 aa16.36■□□□□ 0.21
PTCH1-226ENST00000553011 CCND3P30281 292 aaPredicted RBP16.36■□□□□ 0.21
PTCH1-226ENST00000553011 METAP2P50579 478 aaKnown RBP eCLIP16.36■□□□□ 0.21
PTCH1-226ENST00000553011 RCAN1P53805 252 aa16.36■□□□□ 0.21
PTCH1-226ENST00000553011 IFFO2Q5TF58 517 aa16.36■□□□□ 0.21
PTCH1-226ENST00000553011 TRPV1Q8NER1 839 aa16.36■□□□□ 0.21
PTCH1-226ENST00000553011 RRP36Q96EU6 259 aaKnown RBP16.36■□□□□ 0.21
PTCH1-226ENST00000553011 TINF2Q9BSI4 451 aa16.36■□□□□ 0.21
PTCH1-226ENST00000553011 MRPL11Q9Y3B7 192 aaKnown RBP16.36■□□□□ 0.21
PTCH1-226ENST00000553011 PCDHA1Q9Y5I3 950 aa16.36■□□□□ 0.21
PTCH1-226ENST00000553011 ASTN1O14525 1302 aa16.36■□□□□ 0.21
PTCH1-226ENST00000553011 CNTNAP5Q8WYK1 1306 aa16.36■□□□□ 0.21
PTCH1-226ENST00000553011 LRRC37A2A6NM11 1700 aa16.36■□□□□ 0.21
PTCH1-226ENST00000553011 OPLAHO14841 1288 aa16.35■□□□□ 0.21
PTCH1-226ENST00000553011 CALML3P27482 149 aa16.35■□□□□ 0.21
PTCH1-226ENST00000553011 ADD1P35611 737 aaKnown RBP16.35■□□□□ 0.21
PTCH1-226ENST00000553011 EVCP57679 992 aa16.35■□□□□ 0.21
PTCH1-226ENST00000553011 RPS6P62753 249 aaKnown RBP16.35■□□□□ 0.21
PTCH1-226ENST00000553011 FUT2Q10981 343 aa16.35■□□□□ 0.21
PTCH1-226ENST00000553011 PRAMEF19Q5SWL8 479 aa16.35■□□□□ 0.21
PTCH1-226ENST00000553011 RNF207Q6ZRF8 634 aa16.35■□□□□ 0.21
PTCH1-226ENST00000553011 HMX1Q9NP08 348 aaPredicted RBP16.35■□□□□ 0.21
PTCH1-226ENST00000553011 PAK6Q9NQU5 681 aaPredicted RBP16.35■□□□□ 0.21
PTCH1-226ENST00000553011 DDX49Q9Y6V7 483 aaKnown RBP16.35■□□□□ 0.21
PTCH1-226ENST00000553011 NID2Q14112 1375 aa16.35■□□□□ 0.21
PTCH1-226ENST00000553011 PDE4DIPQ5VU43 2346 aa16.34■□□□□ 0.21
PTCH1-226ENST00000553011 GJB1P08034 283 aa16.34■□□□□ 0.21
PTCH1-226ENST00000553011 CYBAP13498 195 aa16.34■□□□□ 0.21
PTCH1-226ENST00000553011 EN2P19622 333 aaPredicted RBP16.34■□□□□ 0.21
PTCH1-226ENST00000553011 PDIA3P30101 505 aaKnown RBP16.34■□□□□ 0.21
PTCH1-226ENST00000553011 MAMDC4Q6UXC1 1216 aa16.34■□□□□ 0.21
PTCH1-226ENST00000553011 ZNF467Q7Z7K2 595 aaPredicted RBP16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms