RNA–Protein interactions for RNA: ENST00000550587.5

DEPDC4-209, Transcript of DEP domain containing 4, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene DEPDC4, Length 1,165 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-209ENST00000550587 BEND7Q8N7W2 519 aaPredicted RBP7.32□□□□□ -1.24
DEPDC4-209ENST00000550587 SLC17A8Q8NDX2 589 aa7.32□□□□□ -1.24
DEPDC4-209ENST00000550587 FAM151AQ8WW52 585 aa7.32□□□□□ -1.24
DEPDC4-209ENST00000550587 DPF3Q92784 378 aa7.32□□□□□ -1.24
DEPDC4-209ENST00000550587 KCNB2Q92953 911 aa7.32□□□□□ -1.24
DEPDC4-209ENST00000550587 ZKSCAN4Q969J2 545 aaPredicted RBP7.32□□□□□ -1.24
DEPDC4-209ENST00000550587 HTATIP2Q9BUP3 242 aa7.32□□□□□ -1.24
DEPDC4-209ENST00000550587 MYH13Q9UKX3 1938 aa7.32□□□□□ -1.24
DEPDC4-209ENST00000550587 BTBD19C9JJ37 291 aa7.31□□□□□ -1.24
DEPDC4-209ENST00000550587 LDHBP07195 334 aaKnown RBP7.31□□□□□ -1.24
DEPDC4-209ENST00000550587 CAPN2P17655 700 aa7.31□□□□□ -1.24
DEPDC4-209ENST00000550587 PSMC4P43686 418 aa7.31□□□□□ -1.24
DEPDC4-209ENST00000550587 FXR1P51114 621 aaKnown RBP eCLIP7.31□□□□□ -1.24
DEPDC4-209ENST00000550587 CACNB3P54284 484 aa7.31□□□□□ -1.24
DEPDC4-209ENST00000550587 FOXK2Q01167 660 aa7.31□□□□□ -1.24
DEPDC4-209ENST00000550587 PLA2G4EQ3MJ16 856 aa7.31□□□□□ -1.24
DEPDC4-209ENST00000550587 SLFNL1Q499Z3 407 aa7.31□□□□□ -1.24
DEPDC4-209ENST00000550587 C4orf17Q53FE4 359 aa7.31□□□□□ -1.24
DEPDC4-209ENST00000550587 MIGA2Q7L4E1 593 aa7.31□□□□□ -1.24
DEPDC4-209ENST00000550587 FASTKD5Q7L8L6 764 aaKnown RBP7.31□□□□□ -1.24
DEPDC4-209ENST00000550587 ANKRD23Q86SG2 305 aa7.31□□□□□ -1.24
DEPDC4-209ENST00000550587 MAGEB6Q8N7X4 407 aa7.31□□□□□ -1.24
DEPDC4-209ENST00000550587 IPO9Q96P70 1041 aaKnown RBP7.31□□□□□ -1.24
DEPDC4-209ENST00000550587 PARK7Q99497 189 aaKnown RBP7.31□□□□□ -1.24
DEPDC4-209ENST00000550587 DSCC1Q9BVC3 393 aa7.31□□□□□ -1.24
DEPDC4-209ENST00000550587 PUS7LQ9H0K6 701 aaKnown RBP7.31□□□□□ -1.24
DEPDC4-209ENST00000550587 PICK1Q9NRD5 415 aa7.31□□□□□ -1.24
DEPDC4-209ENST00000550587 RAI14Q9P0K7 980 aa7.31□□□□□ -1.24
DEPDC4-209ENST00000550587 ABCF2Q9UG63 623 aa7.31□□□□□ -1.24
DEPDC4-209ENST00000550587 LAMB1P07942 1786 aa7.31□□□□□ -1.24
DEPDC4-209ENST00000550587 M0R2C6 588 aa7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 PDHXO00330 501 aa7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 GPAA1O43292 621 aa7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 OIP5O43482 229 aa7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 ITGB2P05107 769 aa7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 LDHCP07864 332 aa7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 HSPD1P10809 573 aaKnown RBP7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 ZKSCAN1P17029 563 aaPredicted RBP7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 CYP7A1P22680 504 aa7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 GRK4P32298 578 aa7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 FCGRTP55899 365 aa7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 MECOMQ03112 1051 aa7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 TCP10Q12799 353 aa7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 RABEP1Q15276 862 aa7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 ALX1Q15699 326 aa7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 NAA16Q6N069 864 aaPredicted RBP7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 APOBEC3HQ6NTF7 200 aaKnown RBP7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 TMEM214Q6NUQ4 689 aaKnown RBP7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 CCDC129Q6ZRS4 1044 aa7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 ZSCAN29Q8IWY8 852 aaPredicted RBP7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 PHTF2Q8N3S3 785 aa7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 SH3TC2Q8TF17 1288 aa7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 SNX21Q969T3 373 aa7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 NSUN4Q96CB9 384 aaKnown RBP7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 STRBPQ96SI9 672 aaKnown RBP7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 OXCT2Q9BYC2 517 aaPredicted RBP7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 TM6SF1Q9BZW5 370 aa7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 RUBCNLQ9H714 662 aa7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 SRRDQ9UH36 339 aa7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 CTNNA3Q9UI47 895 aa7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 RBM8AQ9Y5S9 174 aaKnown RBP7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 NR2E3Q9Y5X4 410 aa7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 SNCAIPQ9Y6H5 919 aa7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 RPAP1Q9BWH6 1393 aaPredicted RBP7.3□□□□□ -1.24
DEPDC4-209ENST00000550587 RBBP6Q7Z6E9 1792 aaKnown RBP7.29□□□□□ -1.24
DEPDC4-209ENST00000550587 A0A1B0GTH6 734 aa7.29□□□□□ -1.24
DEPDC4-209ENST00000550587 PATL2C9JE40 543 aaKnown RBP7.29□□□□□ -1.24
DEPDC4-209ENST00000550587 CXCL11O14625 94 aa7.29□□□□□ -1.24
DEPDC4-209ENST00000550587 SLC27A2O14975 620 aa7.29□□□□□ -1.24
DEPDC4-209ENST00000550587 FGAP02671 866 aa7.29□□□□□ -1.24
DEPDC4-209ENST00000550587 GNAT2P19087 354 aa7.29□□□□□ -1.24
DEPDC4-209ENST00000550587 MAP2K3P46734 347 aa7.29□□□□□ -1.24
DEPDC4-209ENST00000550587 GSTO1P78417 241 aa7.29□□□□□ -1.24
DEPDC4-209ENST00000550587 IRF5Q13568 498 aa7.29□□□□□ -1.24
DEPDC4-209ENST00000550587 UBAP2LQ14157 1087 aaKnown RBP7.29□□□□□ -1.24
DEPDC4-209ENST00000550587 BECN1Q14457 450 aa7.29□□□□□ -1.24
DEPDC4-209ENST00000550587 GNASQ5JWF2 1037 aa7.29□□□□□ -1.24
DEPDC4-209ENST00000550587 VPS53Q5VIR6 699 aa7.29□□□□□ -1.24
DEPDC4-209ENST00000550587 CREB3L3Q68CJ9 461 aa7.29□□□□□ -1.24
DEPDC4-209ENST00000550587 C17orf99Q6UX52 265 aa7.29□□□□□ -1.24
DEPDC4-209ENST00000550587 ZNF384Q8TF68 577 aa7.29□□□□□ -1.24
DEPDC4-209ENST00000550587 RNF208Q9H0X6 261 aa7.29□□□□□ -1.24
DEPDC4-209ENST00000550587 USP40Q9NVE5 1235 aa7.29□□□□□ -1.24
DEPDC4-209ENST00000550587 CPA4Q9UI42 421 aa7.29□□□□□ -1.24
DEPDC4-209ENST00000550587 PALD1Q9ULE6 856 aa7.29□□□□□ -1.24
DEPDC4-209ENST00000550587 DOLKQ9UPQ8 538 aa7.29□□□□□ -1.24
DEPDC4-209ENST00000550587 SNX14Q9Y5W7 946 aa7.29□□□□□ -1.24
DEPDC4-209ENST00000550587 MYPNQ86TC9 1320 aa7.28□□□□□ -1.24
DEPDC4-209ENST00000550587 KIAA0100Q14667 2235 aaKnown RBP7.28□□□□□ -1.24
DEPDC4-209ENST00000550587 SHISA8B8ZZ34 492 aa7.28□□□□□ -1.24
DEPDC4-209ENST00000550587 FOXP2O15409 715 aa7.28□□□□□ -1.24
DEPDC4-209ENST00000550587 MBD4O95243 580 aa7.28□□□□□ -1.24
DEPDC4-209ENST00000550587 PSMA5P28066 241 aa7.28□□□□□ -1.24
DEPDC4-209ENST00000550587 MSX1P28360 303 aa7.28□□□□□ -1.24
DEPDC4-209ENST00000550587 PRDX5P30044 214 aa7.28□□□□□ -1.24
DEPDC4-209ENST00000550587 INPP5BP32019 993 aa7.28□□□□□ -1.24
DEPDC4-209ENST00000550587 NEK4P51957 841 aa7.28□□□□□ -1.24
DEPDC4-209ENST00000550587 SNRPNP63162 240 aaKnown RBP7.28□□□□□ -1.24
DEPDC4-209ENST00000550587 KRT32Q14532 448 aa7.28□□□□□ -1.24
DEPDC4-209ENST00000550587 GRIK5Q16478 980 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms