RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 ABCB5Q2M3G0 1257 aa16.92■□□□□ 0.3
PTCH1-217ENST00000548420 GORABQ5T7V8 394 aa16.92■□□□□ 0.3
PTCH1-217ENST00000548420 FBXL6Q8N531 539 aa16.92■□□□□ 0.3
PTCH1-217ENST00000548420 SPATA5Q8NB90 893 aa16.92■□□□□ 0.3
PTCH1-217ENST00000548420 DBNLQ9UJU6 430 aaKnown RBP16.92■□□□□ 0.3
PTCH1-217ENST00000548420 ACACBO00763 2458 aa16.91■□□□□ 0.3
PTCH1-217ENST00000548420 SEPT2Q15019 361 aa16.91■□□□□ 0.3
PTCH1-217ENST00000548420 CERKLQ49MI3 558 aaPredicted RBP16.91■□□□□ 0.3
PTCH1-217ENST00000548420 RIOX2Q8IUF8 465 aa16.91■□□□□ 0.3
PTCH1-217ENST00000548420 SUGP1Q8IWZ8 645 aaKnown RBP16.91■□□□□ 0.3
PTCH1-217ENST00000548420 RHPN1Q8TCX5 695 aa16.91■□□□□ 0.3
PTCH1-217ENST00000548420 FSD1Q9BTV5 496 aa16.91■□□□□ 0.3
PTCH1-217ENST00000548420 MYH1P12882 1939 aa16.91■□□□□ 0.3
PTCH1-217ENST00000548420 RAB11FIP3O75154 756 aa16.9■□□□□ 0.3
PTCH1-217ENST00000548420 COL19A1Q14993 1142 aa16.9■□□□□ 0.3
PTCH1-217ENST00000548420 PKN1Q16512 942 aa16.9■□□□□ 0.3
PTCH1-217ENST00000548420 CCDC158Q5M9N0 1113 aa16.9■□□□□ 0.3
PTCH1-217ENST00000548420 MSL3Q8N5Y2 521 aaKnown RBP16.9■□□□□ 0.3
PTCH1-217ENST00000548420 FGD4Q96M96 766 aa16.9■□□□□ 0.3
PTCH1-217ENST00000548420 CCDC8Q9H0W5 538 aaPredicted RBP16.9■□□□□ 0.3
PTCH1-217ENST00000548420 SPC25Q9HBM1 224 aa16.9■□□□□ 0.3
PTCH1-217ENST00000548420 ADAMTS5Q9UNA0 930 aa16.9■□□□□ 0.3
PTCH1-217ENST00000548420 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.89■□□□□ 0.29
PTCH1-217ENST00000548420 FLOT1O75955 427 aa16.89■□□□□ 0.29
PTCH1-217ENST00000548420 HLA-DOAP06340 250 aa16.89■□□□□ 0.29
PTCH1-217ENST00000548420 ACTN1P12814 892 aa16.89■□□□□ 0.29
PTCH1-217ENST00000548420 SHMT1P34896 483 aa16.89■□□□□ 0.29
PTCH1-217ENST00000548420 LTBRP36941 435 aa16.89■□□□□ 0.29
PTCH1-217ENST00000548420 KIF1BPQ96EK5 621 aa16.89■□□□□ 0.29
PTCH1-217ENST00000548420 KATNBL1Q9H079 304 aa16.89■□□□□ 0.29
PTCH1-217ENST00000548420 TRMT13Q9NUP7 481 aaKnown RBP16.89■□□□□ 0.29
PTCH1-217ENST00000548420 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.89■□□□□ 0.29
PTCH1-217ENST00000548420 TLR7Q9NYK1 1049 aaKnown RBP16.89■□□□□ 0.29
PTCH1-217ENST00000548420 ATRXP46100 2492 aa16.89■□□□□ 0.29
PTCH1-217ENST00000548420 ZNF292O60281 2723 aa16.89■□□□□ 0.29
PTCH1-217ENST00000548420 DNAJC25-GNG10A0A024R161 153 aa16.88■□□□□ 0.29
PTCH1-217ENST00000548420 LINC01553A4QN01 128 aa16.88■□□□□ 0.29
PTCH1-217ENST00000548420 AVPR2P30518 371 aa16.88■□□□□ 0.29
PTCH1-217ENST00000548420 DYNLL1P63167 89 aaKnown RBP16.88■□□□□ 0.29
PTCH1-217ENST00000548420 TTC39AQ5SRH9 613 aa16.88■□□□□ 0.29
PTCH1-217ENST00000548420 PABPC5Q96DU9 382 aaKnown RBP16.88■□□□□ 0.29
PTCH1-217ENST00000548420 TGS1Q96RS0 853 aaKnown RBP16.88■□□□□ 0.29
PTCH1-217ENST00000548420 ALDH8A1Q9H2A2 487 aaPredicted RBP16.88■□□□□ 0.29
PTCH1-217ENST00000548420 IGSF3O75054 1194 aa16.87■□□□□ 0.29
PTCH1-217ENST00000548420 SMAD2Q15796 467 aaKnown RBP16.87■□□□□ 0.29
PTCH1-217ENST00000548420 SIAH1Q8IUQ4 282 aa16.87■□□□□ 0.29
PTCH1-217ENST00000548420 SPICE1Q8N0Z3 855 aa16.87■□□□□ 0.29
PTCH1-217ENST00000548420 FBXO28Q9NVF7 368 aa16.87■□□□□ 0.29
PTCH1-217ENST00000548420 ZNF214Q9UL59 606 aaPredicted RBP16.87■□□□□ 0.29
PTCH1-217ENST00000548420 MYO5AQ9Y4I1 1855 aaKnown RBP16.86■□□□□ 0.29
PTCH1-217ENST00000548420 CABYRO75952 493 aa16.86■□□□□ 0.29
PTCH1-217ENST00000548420 BAG3O95817 575 aa16.86■□□□□ 0.29
PTCH1-217ENST00000548420 CYP2E1P05181 493 aaPredicted RBP16.86■□□□□ 0.29
PTCH1-217ENST00000548420 PLCG2P16885 1265 aa16.86■□□□□ 0.29
PTCH1-217ENST00000548420 STAT3P40763 770 aa16.86■□□□□ 0.29
PTCH1-217ENST00000548420 DEFB103AP81534 67 aa16.86■□□□□ 0.29
PTCH1-217ENST00000548420 ZXDAP98168 799 aa16.86■□□□□ 0.29
PTCH1-217ENST00000548420 TCEAL5Q5H9L2 206 aa16.86■□□□□ 0.29
PTCH1-217ENST00000548420 EP400NLQ6ZTU2 488 aa16.86■□□□□ 0.29
PTCH1-217ENST00000548420 AACSQ86V21 672 aa16.86■□□□□ 0.29
PTCH1-217ENST00000548420 REPS2Q8NFH8 660 aa16.86■□□□□ 0.29
PTCH1-217ENST00000548420 NOL10Q9BSC4 688 aaKnown RBP16.86■□□□□ 0.29
PTCH1-217ENST00000548420 DCTPP1Q9H773 170 aa16.86■□□□□ 0.29
PTCH1-217ENST00000548420 IL1RAPL2Q9NP60 686 aa16.86■□□□□ 0.29
PTCH1-217ENST00000548420 CABP5Q9NP86 173 aa16.86■□□□□ 0.29
PTCH1-217ENST00000548420 SERPINB13Q9UIV8 391 aa16.86■□□□□ 0.29
PTCH1-217ENST00000548420 PCDHB15Q9Y5E8 787 aa16.86■□□□□ 0.29
PTCH1-217ENST00000548420 IQCF3P0C7M6 154 aa16.85■□□□□ 0.29
PTCH1-217ENST00000548420 NBL1P41271 181 aa16.85■□□□□ 0.29
PTCH1-217ENST00000548420 WDR5P61964 334 aaKnown RBP16.85■□□□□ 0.29
PTCH1-217ENST00000548420 EVX2Q03828 476 aa16.85■□□□□ 0.29
PTCH1-217ENST00000548420 NAA16Q6N069 864 aaPredicted RBP16.85■□□□□ 0.29
PTCH1-217ENST00000548420 CLASRPQ8N2M8 674 aaKnown RBP16.85■□□□□ 0.29
PTCH1-217ENST00000548420 RMDN1Q96DB5 314 aa16.85■□□□□ 0.29
PTCH1-217ENST00000548420 MRPL38Q96DV4 380 aaKnown RBP16.85■□□□□ 0.29
PTCH1-217ENST00000548420 C17orf80Q9BSJ5 609 aa16.85■□□□□ 0.29
PTCH1-217ENST00000548420 IRF2BPLQ9H1B7 796 aa16.85■□□□□ 0.29
PTCH1-217ENST00000548420 EHD4Q9H223 541 aa16.85■□□□□ 0.29
PTCH1-217ENST00000548420 ABHD16BQ9H3Z7 469 aa16.85■□□□□ 0.29
PTCH1-217ENST00000548420 SNRKQ9NRH2 765 aa16.85■□□□□ 0.29
PTCH1-217ENST00000548420 LRP2BPQ9P2M1 347 aa16.85■□□□□ 0.29
PTCH1-217ENST00000548420 GNEQ9Y223 722 aaKnown RBP16.85■□□□□ 0.29
PTCH1-217ENST00000548420 FAM50BQ9Y247 325 aa16.85■□□□□ 0.29
PTCH1-217ENST00000548420 EP300Q09472 2414 aaPredicted RBP16.85■□□□□ 0.29
PTCH1-217ENST00000548420 TANC1Q9C0D5 1861 aa16.84■□□□□ 0.29
PTCH1-217ENST00000548420 ZAP70P43403 619 aa16.84■□□□□ 0.29
PTCH1-217ENST00000548420 DLX2Q07687 328 aaPredicted RBP16.84■□□□□ 0.29
PTCH1-217ENST00000548420 GPNMBQ14956 572 aa16.84■□□□□ 0.29
PTCH1-217ENST00000548420 CLUL1Q15846 466 aa16.84■□□□□ 0.29
PTCH1-217ENST00000548420 TCTN1Q2MV58 587 aa16.84■□□□□ 0.29
PTCH1-217ENST00000548420 TMEM63BQ5T3F8 832 aa16.84■□□□□ 0.29
PTCH1-217ENST00000548420 CLEC10AQ8IUN9 316 aa16.84■□□□□ 0.29
PTCH1-217ENST00000548420 ADSSL1Q8N142 457 aa16.84■□□□□ 0.29
PTCH1-217ENST00000548420 ASIC4Q96FT7 647 aa16.84■□□□□ 0.29
PTCH1-217ENST00000548420 FTOQ9C0B1 505 aaKnown RBP eCLIP16.84■□□□□ 0.29
PTCH1-217ENST00000548420 RIPK3Q9Y572 518 aa16.84■□□□□ 0.29
PTCH1-217ENST00000548420 MAP1BP46821 2468 aaKnown RBP16.84■□□□□ 0.29
PTCH1-217ENST00000548420 MBTPS2O43462 519 aa16.83■□□□□ 0.28
PTCH1-217ENST00000548420 TNKSO95271 1327 aa16.83■□□□□ 0.28
PTCH1-217ENST00000548420 PLCD1P51178 756 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms