RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-223ENST00000544669 STAG2Q8N3U4 1231 aa14.6□□□□□ -0.07
CPSF7-223ENST00000544669 CSGALNACT2Q8N6G5 542 aa14.6□□□□□ -0.07
CPSF7-223ENST00000544669 ZNF507Q8TCN5 953 aa14.6□□□□□ -0.07
CPSF7-223ENST00000544669 CERKQ8TCT0 537 aa14.6□□□□□ -0.07
CPSF7-223ENST00000544669 STAMQ92783 540 aa14.6□□□□□ -0.07
CPSF7-223ENST00000544669 GPKOWQ92917 476 aaPredicted RBP eCLIP14.6□□□□□ -0.073e-7■■■■□ 21.6
CPSF7-223ENST00000544669 BAZ2AQ9UIF9 1905 aaKnown RBP14.6□□□□□ -0.07
CPSF7-223ENST00000544669 MYH13Q9UKX3 1938 aa14.6□□□□□ -0.07
CPSF7-223ENST00000544669 WTIPA6NIX2 430 aaPredicted RBP14.59□□□□□ -0.07
CPSF7-223ENST00000544669 PSMD14O00487 310 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 FANCGO15287 622 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 CDK8P49336 464 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 ST5P78524 1137 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 ZBED6P86452 979 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 MTF1Q14872 753 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 NAALADL2Q58DX5 795 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 NOM1Q5C9Z4 860 aaKnown RBP14.59□□□□□ -0.07
CPSF7-223ENST00000544669 SV2BQ7L1I2 683 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 RTFDC1Q9BY42 306 aaPredicted RBP14.59□□□□□ -0.07
CPSF7-223ENST00000544669 FAM205AQ6ZU69 1335 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 MYO3BQ8WXR4 1341 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 KLRC4O43908 158 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 PDE4DQ08499 809 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 MEA1Q16626 185 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 MAP9Q49MG5 647 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 CCDC70Q6NSX1 233 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 TTI2Q6NXR4 508 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 TEX11Q8IYF3 940 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 REXO1Q8N1G1 1221 aaKnown RBP14.59□□□□□ -0.07
CPSF7-223ENST00000544669 LRRN4CLQ8ND94 238 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 TUBGCP2Q9BSJ2 902 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 EDEM3Q9BZQ6 932 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 UBXN6Q9BZV1 441 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 TRIM9Q9C026 710 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 CALCOCO1Q9P1Z2 691 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 SRP68Q9UHB9 627 aaKnown RBP14.59□□□□□ -0.07
CPSF7-223ENST00000544669 GGA1Q9UJY5 639 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 MYO6Q9UM54 1294 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 GDAQ9Y2T3 454 aa14.59□□□□□ -0.07
CPSF7-223ENST00000544669 ANO9A1A5B4 782 aa14.58□□□□□ -0.08
CPSF7-223ENST00000544669 CCNT1O60563 726 aaKnown RBP14.58□□□□□ -0.08
CPSF7-223ENST00000544669 TRIM21P19474 475 aaKnown RBP14.58□□□□□ -0.08
CPSF7-223ENST00000544669 BTDP43251 543 aa14.58□□□□□ -0.08
CPSF7-223ENST00000544669 PLA2G4AP47712 749 aa14.58□□□□□ -0.08
CPSF7-223ENST00000544669 FXR2P51116 673 aaKnown RBP eCLIP14.58□□□□□ -0.08
CPSF7-223ENST00000544669 TBC1D8BQ0IIM8 1120 aa14.58□□□□□ -0.08
CPSF7-223ENST00000544669 PTPN21Q16825 1174 aa14.58□□□□□ -0.08
CPSF7-223ENST00000544669 MCTP2Q6DN12 878 aa14.58□□□□□ -0.08
CPSF7-223ENST00000544669 DYNLL2Q96FJ2 89 aa14.58□□□□□ -0.08
CPSF7-223ENST00000544669 NGLY1Q96IV0 654 aa14.58□□□□□ -0.08
CPSF7-223ENST00000544669 CDK5RAP3Q96JB5 506 aa14.58□□□□□ -0.08
CPSF7-223ENST00000544669 ERGIC2Q96RQ1 377 aa14.58□□□□□ -0.08
CPSF7-223ENST00000544669 RIOX1Q9H6W3 641 aa14.58□□□□□ -0.08
CPSF7-223ENST00000544669 CD209Q9NNX6 404 aa14.58□□□□□ -0.08
CPSF7-223ENST00000544669 PODXL2Q9NZ53 605 aa14.58□□□□□ -0.08
CPSF7-223ENST00000544669 SWAP70Q9UH65 585 aa14.58□□□□□ -0.08
CPSF7-223ENST00000544669 PLIN4Q96Q06 1357 aa14.58□□□□□ -0.08
CPSF7-223ENST00000544669 USP17L3A6NCW0 530 aa14.57□□□□□ -0.08
CPSF7-223ENST00000544669 USP17L4A6NCW7 530 aa14.57□□□□□ -0.08
CPSF7-223ENST00000544669 EIF3CLB5ME19 914 aaKnown RBP14.57□□□□□ -0.08
CPSF7-223ENST00000544669 CYTH3O43739 400 aa14.57□□□□□ -0.08
CPSF7-223ENST00000544669 TBC1D8O95759 1140 aa14.57□□□□□ -0.08
CPSF7-223ENST00000544669 ERVK-24P63145 666 aa14.57□□□□□ -0.08
CPSF7-223ENST00000544669 SMC1AQ14683 1233 aaKnown RBP14.57□□□□□ -0.08
CPSF7-223ENST00000544669 LETM2Q2VYF4 491 aa14.57□□□□□ -0.08
CPSF7-223ENST00000544669 USP17L1Q7RTZ2 530 aa14.57□□□□□ -0.08
CPSF7-223ENST00000544669 TXNRD3Q86VQ6 643 aa14.57□□□□□ -0.08
CPSF7-223ENST00000544669 ZSCAN29Q8IWY8 852 aaPredicted RBP14.57□□□□□ -0.08
CPSF7-223ENST00000544669 SLC35F6Q8N357 371 aa14.57□□□□□ -0.08
CPSF7-223ENST00000544669 EIF3CQ99613 913 aaKnown RBP14.57□□□□□ -0.08
CPSF7-223ENST00000544669 NUCKS1Q9H1E3 243 aaKnown RBP14.57□□□□□ -0.08
CPSF7-223ENST00000544669 RIC8AQ9NPQ8 531 aa14.57□□□□□ -0.08
CPSF7-223ENST00000544669 COL4A1P02462 1669 aa14.57□□□□□ -0.08
CPSF7-223ENST00000544669 TTC26A0AVF1 554 aa14.57□□□□□ -0.08
CPSF7-223ENST00000544669 PES1O00541 588 aaKnown RBP14.57□□□□□ -0.08
CPSF7-223ENST00000544669 USO1O60763 962 aaKnown RBP14.57□□□□□ -0.08
CPSF7-223ENST00000544669 MTIF2P46199 727 aaKnown RBP14.57□□□□□ -0.08
CPSF7-223ENST00000544669 ASIC1P78348 528 aa14.57□□□□□ -0.08
CPSF7-223ENST00000544669 LRRC63Q05C16 580 aa14.57□□□□□ -0.08
CPSF7-223ENST00000544669 SPA17Q15506 151 aa14.57□□□□□ -0.08
CPSF7-223ENST00000544669 LONRF2Q1L5Z9 754 aa14.57□□□□□ -0.08
CPSF7-223ENST00000544669 WDR93Q6P2C0 686 aa14.57□□□□□ -0.08
CPSF7-223ENST00000544669 IRF2BP1Q8IU81 584 aa14.57□□□□□ -0.08
CPSF7-223ENST00000544669 RUBCNQ92622 972 aa14.57□□□□□ -0.08
CPSF7-223ENST00000544669 TMEM60Q9H2L4 133 aa14.57□□□□□ -0.08
CPSF7-223ENST00000544669 BMP2KQ9NSY1 1161 aaPredicted RBP14.57□□□□□ -0.08
CPSF7-223ENST00000544669 PSD3Q9NYI0 1048 aa14.57□□□□□ -0.08
CPSF7-223ENST00000544669 C10orf71Q711Q0 1435 aa14.56□□□□□ -0.08
CPSF7-223ENST00000544669 GAKO14976 1311 aa14.56□□□□□ -0.08
CPSF7-223ENST00000544669 MAP2K7O14733 419 aa14.56□□□□□ -0.08
CPSF7-223ENST00000544669 GCFC2P16383 781 aaKnown RBP14.56□□□□□ -0.08
CPSF7-223ENST00000544669 PLCG1P19174 1290 aa14.56□□□□□ -0.08
CPSF7-223ENST00000544669 ARHGAP25P42331 645 aa14.56□□□□□ -0.08
CPSF7-223ENST00000544669 CRY2Q49AN0 593 aa14.56□□□□□ -0.08
CPSF7-223ENST00000544669 TYW1BQ6NUM6 668 aa14.56□□□□□ -0.08
CPSF7-223ENST00000544669 UNC13DQ70J99 1090 aa14.56□□□□□ -0.08
CPSF7-223ENST00000544669 KIAA1328Q86T90 577 aa14.56□□□□□ -0.08
CPSF7-223ENST00000544669 MAPKAPK5Q8IW41 473 aa14.56□□□□□ -0.08
CPSF7-223ENST00000544669 FNBP4Q8N3X1 1017 aaPredicted RBP14.56□□□□□ -0.08
CPSF7-223ENST00000544669 TSG101Q99816 390 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms