RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 SH3TC1Q8TE82 1336 aa15.69■□□□□ 0.1
LIMS1-215ENST00000544547 PHKA1P46020 1223 aa15.69■□□□□ 0.1
LIMS1-215ENST00000544547 NR1I3Q14994 352 aa15.69■□□□□ 0.1
LIMS1-215ENST00000544547 PEX26Q7Z412 305 aa15.69■□□□□ 0.1
LIMS1-215ENST00000544547 CCT8L2Q96SF2 557 aa15.69■□□□□ 0.1
LIMS1-215ENST00000544547 STMN4Q9H169 189 aaPredicted RBP15.69■□□□□ 0.1
LIMS1-215ENST00000544547 VIPAS39Q9H9C1 493 aa15.69■□□□□ 0.1
LIMS1-215ENST00000544547 PDE6AP16499 860 aa15.69■□□□□ 0.1
LIMS1-215ENST00000544547 EIF4A3P38919 411 aaKnown RBP15.69■□□□□ 0.1
LIMS1-215ENST00000544547 APBA1Q02410 837 aa15.69■□□□□ 0.1
LIMS1-215ENST00000544547 DCAF17Q5H9S7 520 aaPredicted RBP15.69■□□□□ 0.1
LIMS1-215ENST00000544547 AKNAD1Q5T1N1 836 aa15.69■□□□□ 0.1
LIMS1-215ENST00000544547 CNOT6LQ96LI5 555 aaKnown RBP15.69■□□□□ 0.1
LIMS1-215ENST00000544547 NLRP3Q96P20 1036 aa15.69■□□□□ 0.1
LIMS1-215ENST00000544547 ATP8A1Q9Y2Q0 1164 aa15.69■□□□□ 0.1
LIMS1-215ENST00000544547 MMP1P03956 469 aa15.68■□□□□ 0.1
LIMS1-215ENST00000544547 CALML3P27482 149 aa15.68■□□□□ 0.1
LIMS1-215ENST00000544547 CDC27P30260 824 aa15.68■□□□□ 0.1
LIMS1-215ENST00000544547 NAPAP54920 295 aa15.68■□□□□ 0.1
LIMS1-215ENST00000544547 CCDC38Q502W7 563 aa15.68■□□□□ 0.1
LIMS1-215ENST00000544547 SYNE4Q8N205 404 aa15.68■□□□□ 0.1
LIMS1-215ENST00000544547 FNBP4Q8N3X1 1017 aaPredicted RBP15.68■□□□□ 0.1
LIMS1-215ENST00000544547 SAAL1Q96ER3 474 aa15.68■□□□□ 0.1
LIMS1-215ENST00000544547 GREM2Q9H772 168 aa15.68■□□□□ 0.1
LIMS1-215ENST00000544547 SRPRBQ9Y5M8 271 aaKnown RBP15.68■□□□□ 0.1
LIMS1-215ENST00000544547 SKAP2O75563 359 aaPredicted RBP15.68■□□□□ 0.1
LIMS1-215ENST00000544547 ZKSCAN8Q15776 578 aaPredicted RBP15.68■□□□□ 0.1
LIMS1-215ENST00000544547 CCDC84Q86UT8 332 aaPredicted RBP15.68■□□□□ 0.1
LIMS1-215ENST00000544547 KLHL29Q96CT2 875 aa15.68■□□□□ 0.1
LIMS1-215ENST00000544547 SLC39A2Q9NP94 309 aa15.68■□□□□ 0.1
LIMS1-215ENST00000544547 ZBTB12Q9Y330 459 aaPredicted RBP15.68■□□□□ 0.1
LIMS1-215ENST00000544547 NEURL4Q96JN8 1562 aa15.68■□□□□ 0.1
LIMS1-215ENST00000544547 SNAP23O00161 211 aa15.68■□□□□ 0.1
LIMS1-215ENST00000544547 HLA-DOAP06340 250 aa15.68■□□□□ 0.1
LIMS1-215ENST00000544547 ADCY1Q08828 1119 aa15.68■□□□□ 0.1
LIMS1-215ENST00000544547 MSANTD4Q8NCY6 345 aa15.68■□□□□ 0.1
LIMS1-215ENST00000544547 A0A1B0GTH6 734 aa15.68■□□□□ 0.1
LIMS1-215ENST00000544547 PPP1R37O75864 691 aa15.68■□□□□ 0.1
LIMS1-215ENST00000544547 MTMR3Q13615 1198 aa15.68■□□□□ 0.1
LIMS1-215ENST00000544547 SFMBT2Q5VUG0 894 aa15.68■□□□□ 0.1
LIMS1-215ENST00000544547 NELFCDQ8IXH7 590 aa15.68■□□□□ 0.1
LIMS1-215ENST00000544547 ARHGEF2Q92974 986 aaKnown RBP15.68■□□□□ 0.1
LIMS1-215ENST00000544547 TSKSQ9UJT2 592 aa15.68■□□□□ 0.1
LIMS1-215ENST00000544547 DLC1Q96QB1 1528 aa15.67■□□□□ 0.1
LIMS1-215ENST00000544547 MAGEB6P1A0A0J9YX57 407 aa15.67■□□□□ 0.1
LIMS1-215ENST00000544547 MAP2K7O14733 419 aa15.67■□□□□ 0.1
LIMS1-215ENST00000544547 CYP27B1O15528 508 aa15.67■□□□□ 0.1
LIMS1-215ENST00000544547 SLCO1A2P46721 670 aa15.67■□□□□ 0.1
LIMS1-215ENST00000544547 EXOSC10Q01780 885 aaKnown RBP15.67■□□□□ 0.1
LIMS1-215ENST00000544547 GRIN1Q05586 938 aa15.67■□□□□ 0.1
LIMS1-215ENST00000544547 DENND2CQ68D51 928 aa15.67■□□□□ 0.1
LIMS1-215ENST00000544547 TXKP42681 527 aa15.67■□□□□ 0.1
LIMS1-215ENST00000544547 CETN1Q12798 172 aa15.67■□□□□ 0.1
LIMS1-215ENST00000544547 PPP4R3AQ6IN85 833 aa15.67■□□□□ 0.1
LIMS1-215ENST00000544547 MB21D1Q8N884 522 aa15.67■□□□□ 0.1
LIMS1-215ENST00000544547 SPATA4Q8NEY3 305 aa15.67■□□□□ 0.1
LIMS1-215ENST00000544547 ZNF473Q8WTR7 871 aaKnown RBP15.67■□□□□ 0.1
LIMS1-215ENST00000544547 STAG1Q8WVM7 1258 aa15.67■□□□□ 0.1
LIMS1-215ENST00000544547 RRP36Q96EU6 259 aaKnown RBP15.67■□□□□ 0.1
LIMS1-215ENST00000544547 INTS9Q9NV88 658 aaKnown RBP15.67■□□□□ 0.1
LIMS1-215ENST00000544547 NIP7Q9Y221 180 aaKnown RBP eCLIP15.67■□□□□ 0.1
LIMS1-215ENST00000544547 RTL9Q8NET4 1388 aa15.67■□□□□ 0.1
LIMS1-215ENST00000544547 ZNF609O15014 1411 aa15.67■□□□□ 0.1
LIMS1-215ENST00000544547 GYPCP04921 128 aa15.67■□□□□ 0.1
LIMS1-215ENST00000544547 GBP1P32455 592 aa15.67■□□□□ 0.1
LIMS1-215ENST00000544547 CUL4BQ13620 913 aa15.67■□□□□ 0.1
LIMS1-215ENST00000544547 SV2BQ7L1I2 683 aa15.67■□□□□ 0.1
LIMS1-215ENST00000544547 OXER1Q8TDS5 423 aa15.67■□□□□ 0.1
LIMS1-215ENST00000544547 ARL8AQ96BM9 186 aa15.67■□□□□ 0.1
LIMS1-215ENST00000544547 ELAC2Q9BQ52 826 aaKnown RBP15.67■□□□□ 0.1
LIMS1-215ENST00000544547 PCDH11XQ9BZA7 1347 aa15.67■□□□□ 0.1
LIMS1-215ENST00000544547 PCDH11YQ9BZA8 1340 aa15.67■□□□□ 0.1
LIMS1-215ENST00000544547 LSP1P33241 339 aa15.66■□□□□ 0.1
LIMS1-215ENST00000544547 GNPTABQ3T906 1256 aa15.66■□□□□ 0.1
LIMS1-215ENST00000544547 RNF10Q8N5U6 811 aaKnown RBP15.66■□□□□ 0.1
LIMS1-215ENST00000544547 IL17RAQ96F46 866 aa15.66■□□□□ 0.1
LIMS1-215ENST00000544547 DONSONQ9NYP3 566 aa15.66■□□□□ 0.1
LIMS1-215ENST00000544547 NKIRAS1Q9NYS0 192 aa15.66■□□□□ 0.1
LIMS1-215ENST00000544547 CDHR2Q9BYE9 1310 aa15.66■□□□□ 0.1
LIMS1-215ENST00000544547 DHX9Q08211 1270 aaKnown RBP15.66■□□□□ 0.1
LIMS1-215ENST00000544547 CALCOCO2Q13137 446 aa15.66■□□□□ 0.1
LIMS1-215ENST00000544547 ASIC2Q16515 512 aa15.66■□□□□ 0.1
LIMS1-215ENST00000544547 IFNL3Q8IZI9 196 aa15.66■□□□□ 0.1
LIMS1-215ENST00000544547 ARMC2Q8NEN0 867 aa15.66■□□□□ 0.1
LIMS1-215ENST00000544547 KCNV2Q8TDN2 545 aa15.66■□□□□ 0.1
LIMS1-215ENST00000544547 SDR42E1Q8WUS8 393 aa15.66■□□□□ 0.1
LIMS1-215ENST00000544547 HVCN1Q96D96 273 aa15.66■□□□□ 0.1
LIMS1-215ENST00000544547 AP1M1Q9BXS5 423 aa15.66■□□□□ 0.1
LIMS1-215ENST00000544547 PCDHA13Q9Y5I0 950 aa15.66■□□□□ 0.1
LIMS1-215ENST00000544547 GMNCA6NCL1 334 aa15.66■□□□□ 0.1
LIMS1-215ENST00000544547 NAIF1Q69YI7 327 aaPredicted RBP15.66■□□□□ 0.1
LIMS1-215ENST00000544547 CNNM4Q6P4Q7 775 aa15.66■□□□□ 0.1
LIMS1-215ENST00000544547 SPATA5Q8NB90 893 aa15.66■□□□□ 0.1
LIMS1-215ENST00000544547 SETDB2Q96T68 719 aa15.66■□□□□ 0.1
LIMS1-215ENST00000544547 FOXP1Q9H334 677 aaPredicted RBP15.66■□□□□ 0.1
LIMS1-215ENST00000544547 POLR2FP61218 127 aaKnown RBP15.66■□□□□ 0.1
LIMS1-215ENST00000544547 TSNAXIP1Q2TAA8 658 aa15.66■□□□□ 0.1
LIMS1-215ENST00000544547 ZSWIM5Q9P217 1185 aa15.66■□□□□ 0.1
LIMS1-215ENST00000544547 ADD3Q9UEY8 706 aaKnown RBP15.66■□□□□ 0.1
LIMS1-215ENST00000544547 GGT7Q9UJ14 662 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms