RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 SAFBQ15424 915 aaKnown RBP eCLIP10.97□□□□□ -0.65
YBX3-215ENST00000544504 SH3D19Q5HYK7 790 aa10.97□□□□□ -0.65
YBX3-215ENST00000544504 TEX2Q8IWB9 1127 aa10.97□□□□□ -0.65
YBX3-215ENST00000544504 STAG2Q8N3U4 1231 aa10.97□□□□□ -0.65
YBX3-215ENST00000544504 CCDC82Q8N4S0 544 aa10.97□□□□□ -0.65
YBX3-215ENST00000544504 ANKLE1Q8NAG6 615 aa10.97□□□□□ -0.65
YBX3-215ENST00000544504 CCDC148Q8NFR7 591 aa10.97□□□□□ -0.65
YBX3-215ENST00000544504 PHKBQ93100 1093 aa10.97□□□□□ -0.65
YBX3-215ENST00000544504 GPCPD1Q9NPB8 672 aa10.97□□□□□ -0.65
YBX3-215ENST00000544504 SH3GLB2Q9NR46 395 aa10.97□□□□□ -0.65
YBX3-215ENST00000544504 GABRQQ9UN88 632 aa10.97□□□□□ -0.65
YBX3-215ENST00000544504 KCNH4Q9UQ05 1017 aa10.97□□□□□ -0.65
YBX3-215ENST00000544504 AFG3L2Q9Y4W6 797 aa10.97□□□□□ -0.65
YBX3-215ENST00000544504 V9GY48 417 aaPredicted RBP10.97□□□□□ -0.65
YBX3-215ENST00000544504 RPTORQ8N122 1335 aa10.97□□□□□ -0.65
YBX3-215ENST00000544504 CDH23Q9H251 3354 aa10.96□□□□□ -0.65
YBX3-215ENST00000544504 FRMPD2Q68DX3 1309 aaPredicted RBP10.96□□□□□ -0.65
YBX3-215ENST00000544504 VPS37CA5D8V6 355 aaPredicted RBP10.96□□□□□ -0.65
YBX3-215ENST00000544504 TRIM75PA6NK02 468 aa10.96□□□□□ -0.65
YBX3-215ENST00000544504 TMEM232C9JQI7 657 aa10.96□□□□□ -0.65
YBX3-215ENST00000544504 GOLGA8HP0CJ92 632 aa10.96□□□□□ -0.65
YBX3-215ENST00000544504 SCG2P13521 617 aa10.96□□□□□ -0.65
YBX3-215ENST00000544504 FDPSP14324 419 aaKnown RBP10.96□□□□□ -0.65
YBX3-215ENST00000544504 ELNP15502 786 aa10.96□□□□□ -0.65
YBX3-215ENST00000544504 CALML3P27482 149 aa10.96□□□□□ -0.65
YBX3-215ENST00000544504 MAGEA10P43363 369 aaPredicted RBP10.96□□□□□ -0.65
YBX3-215ENST00000544504 FLT3LGP49771 235 aa10.96□□□□□ -0.65
YBX3-215ENST00000544504 PABPC4Q13310 644 aaKnown RBP eCLIP10.96□□□□□ -0.65
YBX3-215ENST00000544504 PFKFB3Q16875 520 aaPredicted RBP10.96□□□□□ -0.65
YBX3-215ENST00000544504 SYDE2Q5VT97 1194 aa10.96□□□□□ -0.65
YBX3-215ENST00000544504 GALNT17Q6IS24 598 aa10.96□□□□□ -0.65
YBX3-215ENST00000544504 KCTD1Q719H9 257 aa10.96□□□□□ -0.65
YBX3-215ENST00000544504 PROCA1Q8NCQ7 364 aaPredicted RBP10.96□□□□□ -0.65
YBX3-215ENST00000544504 FBXO18Q8NFZ0 1043 aa10.96□□□□□ -0.65
YBX3-215ENST00000544504 GLT8D2Q9H1C3 349 aa10.96□□□□□ -0.65
YBX3-215ENST00000544504 ZSCAN16Q9H4T2 348 aaPredicted RBP10.96□□□□□ -0.65
YBX3-215ENST00000544504 BRMS1Q9HCU9 246 aa10.96□□□□□ -0.65
YBX3-215ENST00000544504 ZMYND8Q9ULU4 1186 aaPredicted RBP10.96□□□□□ -0.65
YBX3-215ENST00000544504 DNAH12Q6ZR08 3092 aa10.95□□□□□ -0.66
YBX3-215ENST00000544504 PNMA6FA0A0J9YX94 578 aa10.95□□□□□ -0.66
YBX3-215ENST00000544504 ZSCAN22P10073 491 aaPredicted RBP10.95□□□□□ -0.66
YBX3-215ENST00000544504 MOGSQ13724 837 aa10.95□□□□□ -0.66
YBX3-215ENST00000544504 ZYXQ15942 572 aaKnown RBP10.95□□□□□ -0.66
YBX3-215ENST00000544504 FAM83BQ5T0W9 1011 aa10.95□□□□□ -0.66
YBX3-215ENST00000544504 FAM109BQ6ICB4 259 aaPredicted RBP10.95□□□□□ -0.66
YBX3-215ENST00000544504 PPP1R18Q6NYC8 613 aa10.95□□□□□ -0.66
YBX3-215ENST00000544504 FASTKD5Q7L8L6 764 aaKnown RBP10.95□□□□□ -0.66
YBX3-215ENST00000544504 ADGRF4Q8IZF3 695 aa10.95□□□□□ -0.66
YBX3-215ENST00000544504 SPICE1Q8N0Z3 855 aa10.95□□□□□ -0.66
YBX3-215ENST00000544504 PRPF38AQ8NAV1 312 aaKnown RBP10.95□□□□□ -0.66
YBX3-215ENST00000544504 DIS3LQ8TF46 1054 aaKnown RBP10.95□□□□□ -0.66
YBX3-215ENST00000544504 MTMR8Q96EF0 704 aa10.95□□□□□ -0.66
YBX3-215ENST00000544504 UBE2OQ9C0C9 1292 aaKnown RBP10.95□□□□□ -0.66
YBX3-215ENST00000544504 CTDP1Q9Y5B0 961 aaPredicted RBP10.95□□□□□ -0.66
YBX3-215ENST00000544504 MYH6P13533 1939 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 A0A0G2JLL6 359 aaPredicted RBP10.94□□□□□ -0.66
YBX3-215ENST00000544504 USP17L15C9J2P7 530 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 USP17L13C9JLJ4 530 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 USP17L11C9JVI0 530 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 USP17L18D6R9N7 530 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 USP17L22D6RA61 530 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 USP17L17D6RBQ6 530 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 USP17L19D6RCP7 530 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 USP17L20D6RJB6 530 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 TNPO2O14787 897 aaKnown RBP10.94□□□□□ -0.66
YBX3-215ENST00000544504 ZBTB5O15062 677 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 CYTH3O43739 400 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 BRD1O95696 1058 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 CYP2C8P10632 490 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 SYN1P17600 705 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 VCAM1P19320 739 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 HMGCS2P54868 508 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 USP17L24Q0WX57 530 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 GNL2Q13823 731 aaKnown RBP10.94□□□□□ -0.66
YBX3-215ENST00000544504 PRRT2Q7Z6L0 340 aaPredicted RBP10.94□□□□□ -0.66
YBX3-215ENST00000544504 CCDC84Q86UT8 332 aaPredicted RBP10.94□□□□□ -0.66
YBX3-215ENST00000544504 CMTR1Q8N1G2 835 aaKnown RBP10.94□□□□□ -0.66
YBX3-215ENST00000544504 BICD2Q8TD16 824 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 SLF1Q9BQI6 1058 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 TANGO6Q9C0B7 1094 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 UBA5Q9GZZ9 404 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 JMJD4Q9H9V9 463 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 VAT1LQ9HCJ6 419 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 EMILIN3Q9NT22 766 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 BARHL2Q9NY43 387 aa10.94□□□□□ -0.66
YBX3-215ENST00000544504 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.94□□□□□ -0.66
YBX3-215ENST00000544504 PHIPQ8WWQ0 1821 aa10.93□□□□□ -0.66
YBX3-215ENST00000544504 POTEB2H3BUK9 544 aa10.93□□□□□ -0.66
YBX3-215ENST00000544504 GNA11P29992 359 aa10.93□□□□□ -0.66
YBX3-215ENST00000544504 SLC16A2P36021 539 aa10.93□□□□□ -0.66
YBX3-215ENST00000544504 PKN1Q16512 942 aa10.93□□□□□ -0.66
YBX3-215ENST00000544504 KRT40Q6A162 431 aa10.93□□□□□ -0.66
YBX3-215ENST00000544504 MCTP2Q6DN12 878 aa10.93□□□□□ -0.66
YBX3-215ENST00000544504 TTBK2Q6IQ55 1244 aa10.93□□□□□ -0.66
YBX3-215ENST00000544504 GPAT2Q6NUI2 795 aa10.93□□□□□ -0.66
YBX3-215ENST00000544504 HEATR3Q7Z4Q2 680 aa10.93□□□□□ -0.66
YBX3-215ENST00000544504 BRAPQ7Z569 592 aa10.93□□□□□ -0.66
YBX3-215ENST00000544504 HOMER1Q86YM7 354 aa10.93□□□□□ -0.66
YBX3-215ENST00000544504 GUCD1Q96NT3 240 aa10.93□□□□□ -0.66
YBX3-215ENST00000544504 GBP4Q96PP9 640 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms