RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 KNDC1Q76NI1 1749 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 MTHFD1P11586 935 aaKnown RBP9.82□□□□□ -0.84
VPS13D-212ENST00000543766 ALAS2P22557 587 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 KRT20P35900 424 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 BLVRAP53004 296 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 POLE2P56282 527 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 MAP3K7CLP57077 242 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 VWA3BQ502W6 1294 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 CEP85LQ5SZL2 805 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 PRR23CQ6ZRP0 262 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 PCGF5Q86SE9 256 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 CCDC148Q8NFR7 591 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 CHAMP1Q96JM3 812 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 ALS2CR12Q96Q35 445 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 CCSER1Q9C0I3 900 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 PSD3Q9NYI0 1048 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 PTPRCP08575 1304 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 ADGRB1O14514 1584 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 GPTP24298 496 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 RAPGEF1Q13905 1077 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 CHD1LQ86WJ1 897 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 ZGPATQ8N5A5 531 aaKnown RBP9.82□□□□□ -0.84
VPS13D-212ENST00000543766 GORASP1Q9BQQ3 440 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 USP26Q9BXU7 913 aa9.82□□□□□ -0.84
VPS13D-212ENST00000543766 ZSCAN16Q9H4T2 348 aaPredicted RBP9.82□□□□□ -0.84
VPS13D-212ENST00000543766 MRPL40Q9NQ50 206 aaKnown RBP9.82□□□□□ -0.84
VPS13D-212ENST00000543766 RASSF10A6NK89 507 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 AKR1B15C9JRZ8 316 aaPredicted RBP9.81□□□□□ -0.84
VPS13D-212ENST00000543766 CDC27P30260 824 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 HNF1BP35680 557 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 CCDC57Q2TAC2 916 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 DZIP1LQ8IYY4 767 aaKnown RBP9.81□□□□□ -0.84
VPS13D-212ENST00000543766 ANKRD42Q8N9B4 389 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 OSBPL5Q9H0X9 879 aaPredicted RBP9.81□□□□□ -0.84
VPS13D-212ENST00000543766 HOMER3Q9NSC5 361 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 ANGPTL3Q9Y5C1 460 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 NPATQ14207 1427 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 SPDYE5A6NIY4 337 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 RECKO95980 971 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 FDX1P10109 184 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 KLC1Q07866 573 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 CBLBQ13191 982 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 CEP78Q5JTW2 689 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 GRAMD4Q6IC98 578 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 ZNF746Q6NUN9 644 aaPredicted RBP9.81□□□□□ -0.84
VPS13D-212ENST00000543766 FBXO38Q6PIJ6 1188 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 FOXR1Q6PIV2 292 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 KRT77Q7Z794 578 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 ARL8AQ96BM9 186 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 TTC25Q96NG3 672 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 TUBGCP4Q9UGJ1 667 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 ATPIF1Q9UII2 106 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 ACAD8Q9UKU7 415 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 KIAA1257Q9ULG3 409 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 RASA1P20936 1047 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 CEBPAP49715 358 aaPredicted RBP9.81□□□□□ -0.84
VPS13D-212ENST00000543766 SKOR1P84550 965 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 API5Q9BZZ5 524 aaKnown RBP9.81□□□□□ -0.84
VPS13D-212ENST00000543766 CAPN10Q9HC96 672 aa9.81□□□□□ -0.84
VPS13D-212ENST00000543766 QRICH2Q9H0J4 1663 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 CCDC151A5D8V7 595 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 RNF8O76064 485 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 KRT18P05783 430 aaKnown RBP9.8□□□□□ -0.84
VPS13D-212ENST00000543766 POTEJP0CG39 1038 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 H2AFXP16104 143 aaPredicted RBP9.8□□□□□ -0.84
VPS13D-212ENST00000543766 RPL13P26373 211 aaKnown RBP9.8□□□□□ -0.84
VPS13D-212ENST00000543766 CWF19L1Q69YN2 538 aaKnown RBP9.8□□□□□ -0.84
VPS13D-212ENST00000543766 COLGALT2Q8IYK4 626 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 ABHD8Q96I13 439 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 TTC14Q96N46 770 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 MTMR9Q96QG7 549 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 EXOC6BQ9Y2D4 811 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 EIF4E1BA6NMX2 242 aaKnown RBP9.8□□□□□ -0.84
VPS13D-212ENST00000543766 SRGNP10124 158 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 HLTFQ14527 1009 aaKnown RBP eCLIP9.8□□□□□ -0.84
VPS13D-212ENST00000543766 GRAMD1BQ3KR37 738 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 CATSPER4Q7RTX7 472 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 RAB11FIP4Q86YS3 637 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 CCDC50Q8IVM0 306 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 BBOF1Q8ND07 529 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 FHOD1Q9Y613 1164 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 NEXMIFQ5QGS0 1516 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 RPAP1Q9BWH6 1393 aaPredicted RBP9.8□□□□□ -0.84
VPS13D-212ENST00000543766 PPIP5K1Q6PFW1 1433 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 CPLX1O14810 134 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 NMT2O60551 498 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 GNALP38405 381 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 CEBPZQ03701 1054 aaKnown RBP9.8□□□□□ -0.84
VPS13D-212ENST00000543766 POMZP3Q6PJE2 187 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 MILR1Q7Z6M3 343 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 LRRC49Q8IUZ0 686 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 DESI2Q9BSY9 194 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 FOXP3Q9BZS1 431 aa9.8□□□□□ -0.84
VPS13D-212ENST00000543766 POM121CA8CG34 1229 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 MYL3P08590 195 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 ATP5DP30049 168 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 ZC3H12BQ5HYM0 836 aaKnown RBP9.79□□□□□ -0.84
VPS13D-212ENST00000543766 TTC39CQ8N584 583 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 DDX19BQ9UMR2 479 aa9.79□□□□□ -0.84
VPS13D-212ENST00000543766 TBX22Q9Y458 520 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms