RNA–Protein interactions for RNA: ENST00000543721.1

LMO3-229, Transcript of LIM domain only 3, humanhuman

TSL 2

Gene LMO3, Length 3,626 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-229ENST00000543721 ZNF512BQ96KM6 892 aaPredicted RBP5.54□□□□□ -1.52
LMO3-229ENST00000543721 SCLT1Q96NL6 688 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 SH2D4AQ9H788 454 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 TMBIM4Q9HC24 238 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 CABP5Q9NP86 173 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 FAM217BQ9NTX9 383 aaPredicted RBP5.54□□□□□ -1.52
LMO3-229ENST00000543721 TRIM10Q9UDY6 481 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 DDX20Q9UHI6 824 aaKnown RBP5.54□□□□□ -1.52
LMO3-229ENST00000543721 NWD2Q9ULI1 1742 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 RTL9Q8NET4 1388 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 AFDNP55196 1824 aaKnown RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 SOS2Q07890 1332 aaPredicted RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 KLHL33A6NCF5 533 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 PJA2O43164 708 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 RTN2O75298 545 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 LUC7L3O95232 432 aaKnown RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 RPN1P04843 607 aaKnown RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 FOXO4P98177 505 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 TBC1D8BQ0IIM8 1120 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 ITGB3BPQ13352 177 aaPredicted RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 WTAPQ15007 396 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 RBBP5Q15291 538 aaKnown RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 ANKRD20A8PQ5CZ79 823 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 ARL6IP4Q66PJ3 421 aaKnown RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 TTC19Q6DKK2 380 aaPredicted RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 WDR59Q6PJI9 974 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 CYB5R4Q7L1T6 521 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 MAATS1Q7Z4T9 603 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 ANKLE2Q86XL3 938 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 SAAL1Q96ER3 474 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 RRP36Q96EU6 259 aaKnown RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 PCMTD1Q96MG8 357 aaPredicted RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 NOX5Q96PH1 765 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 IFIH1Q9BYX4 1025 aaKnown RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 NUCKS1Q9H1E3 243 aaKnown RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 RNF41Q9H4P4 317 aaPredicted RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 MAGEF1Q9HAY2 307 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 TPX2Q9ULW0 747 aaKnown RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 AMOTL2Q9Y2J4 779 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 DISP2A7MBM2 1401 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 SIPA1L3O60292 1781 aaPredicted RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 MACROD2A1Z1Q3 448 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 CES2O00748 559 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 FOXP2O15409 715 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 LCA5LO95447 670 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 FGFR1OPO95684 399 aaKnown RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 CDC25AP30304 524 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 ADD2P35612 726 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 RWDD2BP57060 319 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 HDLBPQ00341 1268 aaKnown RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 GUCY1A3Q02108 690 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 GRIN1Q05586 938 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 CDC37Q16543 378 aaPredicted RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 TTC5Q8N0Z6 440 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 ADSSL1Q8N142 457 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 CENPTQ96BT3 561 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 TRIM47Q96LD4 638 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 ERGIC2Q96RQ1 377 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 RABEP2Q9H5N1 569 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 ADAMTS7Q9UKP4 1686 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 LTN1O94822 1766 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 B4E1Z4 1266 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 RNF225M0QZC1 329 aaPredicted RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 ZNF185O15231 689 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 TRAPPC3O43617 180 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 BUB1BO60566 1050 aaPredicted RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 HEXIM1O94992 359 aaKnown RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 LONP1P36776 959 aaKnown RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 SCTRP47872 440 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 FXR2P51116 673 aaKnown RBP eCLIP5.53□□□□□ -1.52
LMO3-229ENST00000543721 ATP2C1P98194 919 aaPredicted RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 KIAA0753Q2KHM9 967 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 CCDC57Q2TAC2 916 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 SPDYCQ5MJ68 293 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 KCTD16Q68DU8 428 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 CPLX4Q7Z7G2 160 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 CCDC84Q86UT8 332 aaPredicted RBP5.53□□□□□ -1.52
LMO3-229ENST00000543721 CUL5Q93034 780 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 SEC16BQ96JE7 1060 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 LACRTQ9GZZ8 138 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 PCDHA13Q9Y5I0 950 aa5.53□□□□□ -1.52
LMO3-229ENST00000543721 MARF1Q9Y4F3 1742 aaKnown RBP5.52□□□□□ -1.53
LMO3-229ENST00000543721 ZNF233A6NK53 670 aa5.52□□□□□ -1.53
LMO3-229ENST00000543721 PATL2C9JE40 543 aaKnown RBP5.52□□□□□ -1.53
LMO3-229ENST00000543721 AKR1B10O60218 316 aa5.52□□□□□ -1.53
LMO3-229ENST00000543721 CALM1P0DP23 149 aa5.52□□□□□ -1.53
LMO3-229ENST00000543721 CALM2P0DP24 149 aa5.52□□□□□ -1.53
LMO3-229ENST00000543721 CALM3P0DP25 149 aa5.52□□□□□ -1.53
LMO3-229ENST00000543721 GNAT2P19087 354 aa5.52□□□□□ -1.53
LMO3-229ENST00000543721 GCKP35557 465 aa5.52□□□□□ -1.53
LMO3-229ENST00000543721 MAGEA1P43355 309 aa5.52□□□□□ -1.53
LMO3-229ENST00000543721 EIF3BP55884 814 aaKnown RBP5.52□□□□□ -1.53
LMO3-229ENST00000543721 ADCY2Q08462 1091 aa5.52□□□□□ -1.53
LMO3-229ENST00000543721 TTC38Q5R3I4 469 aa5.52□□□□□ -1.53
LMO3-229ENST00000543721 GIGYF2Q6Y7W6 1299 aaKnown RBP5.52□□□□□ -1.53
LMO3-229ENST00000543721 EP400NLQ6ZTU2 488 aa5.52□□□□□ -1.53
LMO3-229ENST00000543721 TBC1D10CQ8IV04 446 aa5.52□□□□□ -1.53
LMO3-229ENST00000543721 EPSTI1Q96J88 318 aa5.52□□□□□ -1.53
LMO3-229ENST00000543721 TUBGCP2Q9BSJ2 902 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms