RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 CCDC194A0A1B0GVG4 234 aa15.36■□□□□ 0.05
VPS33A-208ENST00000543633 MYO1CO00159 1063 aa15.36■□□□□ 0.05
VPS33A-208ENST00000543633 CCNE1P24864 410 aa15.36■□□□□ 0.05
VPS33A-208ENST00000543633 ORC2Q13416 577 aaPredicted RBP15.36■□□□□ 0.05
VPS33A-208ENST00000543633 SF3B2Q13435 895 aaKnown RBP15.36■□□□□ 0.05
VPS33A-208ENST00000543633 GRM4Q14833 912 aa15.36■□□□□ 0.05
VPS33A-208ENST00000543633 RCSD1Q6JBY9 416 aa15.36■□□□□ 0.05
VPS33A-208ENST00000543633 CLEC4GQ6UXB4 293 aa15.36■□□□□ 0.05
VPS33A-208ENST00000543633 ERGIC2Q96RQ1 377 aa15.36■□□□□ 0.05
VPS33A-208ENST00000543633 SUGCTQ9HAC7 445 aa15.36■□□□□ 0.05
VPS33A-208ENST00000543633 HPCAL4Q9UM19 191 aa15.36■□□□□ 0.05
VPS33A-208ENST00000543633 RRP15Q9Y3B9 282 aaKnown RBP15.36■□□□□ 0.05
VPS33A-208ENST00000543633 ABCB11O95342 1321 aa15.35■□□□□ 0.05
VPS33A-208ENST00000543633 FAM205AQ6ZU69 1335 aa15.35■□□□□ 0.05
VPS33A-208ENST00000543633 TRIM49BA6NDI0 452 aa15.35■□□□□ 0.05
VPS33A-208ENST00000543633 N4BP1O75113 896 aaKnown RBP15.35■□□□□ 0.05
VPS33A-208ENST00000543633 ATP1A1P05023 1023 aaKnown RBP15.35■□□□□ 0.05
VPS33A-208ENST00000543633 ATP6V1AP38606 617 aa15.35■□□□□ 0.05
VPS33A-208ENST00000543633 UBA7P41226 1012 aa15.35■□□□□ 0.05
VPS33A-208ENST00000543633 CCDC70Q6NSX1 233 aa15.35■□□□□ 0.05
VPS33A-208ENST00000543633 ZSCAN29Q8IWY8 852 aaPredicted RBP15.35■□□□□ 0.05
VPS33A-208ENST00000543633 COG1Q8WTW3 980 aa15.35■□□□□ 0.05
VPS33A-208ENST00000543633 FAM84BQ96KN1 310 aaPredicted RBP15.35■□□□□ 0.05
VPS33A-208ENST00000543633 KAT14Q9H8E8 782 aa15.35■□□□□ 0.05
VPS33A-208ENST00000543633 TSPY2A6NKD2 308 aa15.34■□□□□ 0.05
VPS33A-208ENST00000543633 PRPF6O94906 941 aaKnown RBP15.34■□□□□ 0.05
VPS33A-208ENST00000543633 TFRCP02786 760 aaKnown RBP15.34■□□□□ 0.05
VPS33A-208ENST00000543633 HNRNPH3P31942 346 aaKnown RBP15.34■□□□□ 0.05
VPS33A-208ENST00000543633 AFAP1L1Q8TED9 768 aa15.34■□□□□ 0.05
VPS33A-208ENST00000543633 P2RX5Q93086 422 aa15.34■□□□□ 0.05
VPS33A-208ENST00000543633 DUSP9Q99956 384 aaKnown RBP15.34■□□□□ 0.05
VPS33A-208ENST00000543633 TUBGCP2Q9BSJ2 902 aa15.34■□□□□ 0.05
VPS33A-208ENST00000543633 TRIM10Q9UDY6 481 aa15.34■□□□□ 0.05
VPS33A-208ENST00000543633 NAV1Q8NEY1 1877 aa15.34■□□□□ 0.05
VPS33A-208ENST00000543633 COBLO75128 1261 aa15.34■□□□□ 0.05
VPS33A-208ENST00000543633 RNF40O75150 1001 aa15.34■□□□□ 0.05
VPS33A-208ENST00000543633 PRLRP16471 622 aa15.34■□□□□ 0.05
VPS33A-208ENST00000543633 VAV2P52735 878 aa15.34■□□□□ 0.05
VPS33A-208ENST00000543633 CSGALNACT2Q8N6G5 542 aa15.34■□□□□ 0.05
VPS33A-208ENST00000543633 MMS19Q96T76 1030 aa15.34■□□□□ 0.05
VPS33A-208ENST00000543633 C7orf25Q9BPX7 421 aa15.34■□□□□ 0.05
VPS33A-208ENST00000543633 LZTS2Q9BRK4 669 aa15.34■□□□□ 0.05
VPS33A-208ENST00000543633 FLT1P17948 1338 aa15.33■□□□□ 0.05
VPS33A-208ENST00000543633 ZC3H4Q9UPT8 1303 aaKnown RBP15.33■□□□□ 0.05
VPS33A-208ENST00000543633 BRWD3Q6RI45 1802 aa15.33■□□□□ 0.05
VPS33A-208ENST00000543633 TRIM21P19474 475 aaKnown RBP15.33■□□□□ 0.04
VPS33A-208ENST00000543633 PMS1P54277 932 aaKnown RBP15.33■□□□□ 0.04
VPS33A-208ENST00000543633 MECOMQ03112 1051 aa15.33■□□□□ 0.04
VPS33A-208ENST00000543633 TRIM58Q8NG06 486 aa15.33■□□□□ 0.04
VPS33A-208ENST00000543633 RASSF8Q8NHQ8 419 aa15.33■□□□□ 0.04
VPS33A-208ENST00000543633 FAM204AQ9H8W3 233 aa15.33■□□□□ 0.04
VPS33A-208ENST00000543633 NHEJ1Q9H9Q4 299 aaPredicted RBP15.33■□□□□ 0.04
VPS33A-208ENST00000543633 TCP11L1Q9NUJ3 509 aa15.33■□□□□ 0.04
VPS33A-208ENST00000543633 COL24A1Q17RW2 1714 aa15.33■□□□□ 0.04
VPS33A-208ENST00000543633 SYF2O95926 243 aaKnown RBP15.33■□□□□ 0.04
VPS33A-208ENST00000543633 FOXR2Q6PJQ5 311 aa15.33■□□□□ 0.04
VPS33A-208ENST00000543633 AMOTL1Q8IY63 956 aa15.33■□□□□ 0.04
VPS33A-208ENST00000543633 MMGT1Q8N4V1 131 aa15.33■□□□□ 0.04
VPS33A-208ENST00000543633 PCDHA6Q9UN73 950 aa15.33■□□□□ 0.04
VPS33A-208ENST00000543633 MINPP1Q9UNW1 487 aa15.33■□□□□ 0.04
VPS33A-208ENST00000543633 MAPK8IP1Q9UQF2 711 aa15.33■□□□□ 0.04
VPS33A-208ENST00000543633 PCDHA8Q9Y5H6 950 aa15.33■□□□□ 0.04
VPS33A-208ENST00000543633 B4DLN1 442 aa15.32■□□□□ 0.04
VPS33A-208ENST00000543633 NMT2O60551 498 aa15.32■□□□□ 0.04
VPS33A-208ENST00000543633 AMPD3Q01432 767 aa15.32■□□□□ 0.04
VPS33A-208ENST00000543633 TBC1D8BQ0IIM8 1120 aa15.32■□□□□ 0.04
VPS33A-208ENST00000543633 KIF5AQ12840 1032 aa15.32■□□□□ 0.04
VPS33A-208ENST00000543633 FAM47AQ5JRC9 791 aa15.32■□□□□ 0.04
VPS33A-208ENST00000543633 ARHGAP27Q6ZUM4 889 aa15.32■□□□□ 0.04
VPS33A-208ENST00000543633 PNMA1Q8ND90 353 aa15.32■□□□□ 0.04
VPS33A-208ENST00000543633 SECISBP2LQ93073 1101 aaKnown RBP15.32■□□□□ 0.04
VPS33A-208ENST00000543633 CNOT6LQ96LI5 555 aaKnown RBP15.32■□□□□ 0.04
VPS33A-208ENST00000543633 BARHL2Q9NY43 387 aa15.32■□□□□ 0.04
VPS33A-208ENST00000543633 USO1O60763 962 aaKnown RBP15.31■□□□□ 0.04
VPS33A-208ENST00000543633 SHOX2O60902 331 aaPredicted RBP15.31■□□□□ 0.04
VPS33A-208ENST00000543633 PPFIA4O75335 1185 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 CLSTN1O94985 981 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 LCA5LO95447 670 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 TNNT3P45378 269 aaPredicted RBP15.31■□□□□ 0.04
VPS33A-208ENST00000543633 FKBP15Q5T1M5 1219 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 SPTY2D1Q68D10 685 aaPredicted RBP15.31■□□□□ 0.04
VPS33A-208ENST00000543633 KRT25Q7Z3Z0 450 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 CCDC155Q8N6L0 562 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 CRACR2AQ9BSW2 395 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 TRIM9Q9C026 710 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 TMEM60Q9H2L4 133 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 JRKLQ9Y4A0 524 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 TNRC6CQ9HCJ0 1690 aaKnown RBP15.31■□□□□ 0.04
VPS33A-208ENST00000543633 RASSF10A6NK89 507 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 STXBP3O00186 592 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 PES1O00541 588 aaKnown RBP15.31■□□□□ 0.04
VPS33A-208ENST00000543633 ENC1O14682 589 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 ADAMTS3O15072 1205 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 TACC1O75410 805 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 TAF1P21675 1872 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 SPA17Q15506 151 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 SLC10A5Q5PT55 438 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 CNNM4Q6P4Q7 775 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 LRRC31Q6UY01 552 aa15.31■□□□□ 0.04
VPS33A-208ENST00000543633 CCNI2Q6ZMN8 369 aaPredicted RBP15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms