RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 RNF146Q9NTX7 359 aa21.23■□□□□ 0.99
CLSTN3-214ENST00000542663 MSRAQ9UJ68 235 aa21.23■□□□□ 0.99
CLSTN3-214ENST00000542663 FGBP02675 491 aa21.22■□□□□ 0.99
CLSTN3-214ENST00000542663 FDX1P10109 184 aa21.22■□□□□ 0.99
CLSTN3-214ENST00000542663 SMPD1P17405 629 aa21.22■□□□□ 0.99
CLSTN3-214ENST00000542663 STAT2P52630 851 aa21.22■□□□□ 0.99
CLSTN3-214ENST00000542663 ITGA7Q13683 1181 aa21.22■□□□□ 0.99
CLSTN3-214ENST00000542663 FSCN1Q16658 493 aaKnown RBP21.22■□□□□ 0.99
CLSTN3-214ENST00000542663 TMEM63BQ5T3F8 832 aa21.22■□□□□ 0.99
CLSTN3-214ENST00000542663 IFNL3Q8IZI9 196 aa21.22■□□□□ 0.99
CLSTN3-214ENST00000542663 VWCEQ96DN2 955 aa21.22■□□□□ 0.99
CLSTN3-214ENST00000542663 WNT8AQ9H1J5 351 aa21.22■□□□□ 0.99
CLSTN3-214ENST00000542663 ZNF287Q9HBT7 754 aa21.22■□□□□ 0.99
CLSTN3-214ENST00000542663 ASB14A6NK59 587 aa21.21■□□□□ 0.99
CLSTN3-214ENST00000542663 B4GALT4O60513 344 aa21.21■□□□□ 0.99
CLSTN3-214ENST00000542663 CABYRO75952 493 aa21.21■□□□□ 0.99
CLSTN3-214ENST00000542663 GNAT2P19087 354 aa21.21■□□□□ 0.99
CLSTN3-214ENST00000542663 NOL8Q76FK4 1167 aaKnown RBP21.21■□□□□ 0.99
CLSTN3-214ENST00000542663 OTOP2Q7RTS6 562 aa21.21■□□□□ 0.99
CLSTN3-214ENST00000542663 MIER1Q8N108 512 aa21.21■□□□□ 0.99
CLSTN3-214ENST00000542663 ADAMTS19Q8TE59 1207 aa21.21■□□□□ 0.99
CLSTN3-214ENST00000542663 NOC4LQ9BVI4 516 aaKnown RBP21.21■□□□□ 0.99
CLSTN3-214ENST00000542663 TRPV6Q9H1D0 765 aa21.21■□□□□ 0.99
CLSTN3-214ENST00000542663 PDGFCQ9NRA1 345 aa21.21■□□□□ 0.99
CLSTN3-214ENST00000542663 SCN10AQ9Y5Y9 1956 aa21.21■□□□□ 0.99
CLSTN3-214ENST00000542663 BDP1A6H8Y1 2624 aa21.21■□□□□ 0.99
CLSTN3-214ENST00000542663 PATL2C9JE40 543 aaKnown RBP21.2■□□□□ 0.98
CLSTN3-214ENST00000542663 APPP05067 770 aa21.2■□□□□ 0.98
CLSTN3-214ENST00000542663 TSPY3P0CV98 308 aa21.2■□□□□ 0.98
CLSTN3-214ENST00000542663 TSPY8P0CW00 308 aa21.2■□□□□ 0.98
CLSTN3-214ENST00000542663 IGFBP4P22692 258 aa21.2■□□□□ 0.98
CLSTN3-214ENST00000542663 CCL23P55773 120 aa21.2■□□□□ 0.98
CLSTN3-214ENST00000542663 TAPT1Q6NXT6 567 aa21.2■□□□□ 0.98
CLSTN3-214ENST00000542663 CHMP4CQ96CF2 233 aa21.2■□□□□ 0.98
CLSTN3-214ENST00000542663 GMCL1Q96IK5 515 aa21.2■□□□□ 0.98
CLSTN3-214ENST00000542663 TRERF1Q96PN7 1200 aa21.2■□□□□ 0.98
CLSTN3-214ENST00000542663 SEC62Q99442 399 aaKnown RBP21.2■□□□□ 0.98
CLSTN3-214ENST00000542663 CHMP4BQ9H444 224 aaKnown RBP21.2■□□□□ 0.98
CLSTN3-214ENST00000542663 SLC28A3Q9HAS3 691 aa21.2■□□□□ 0.98
CLSTN3-214ENST00000542663 RAPGEFL1Q9UHV5 662 aa21.2■□□□□ 0.98
CLSTN3-214ENST00000542663 TRIP12Q14669 1992 aaPredicted RBP21.19■□□□□ 0.98
CLSTN3-214ENST00000542663 DYNC1LI2O43237 492 aaPredicted RBP21.19■□□□□ 0.98
CLSTN3-214ENST00000542663 ZFYP08048 801 aaPredicted RBP21.19■□□□□ 0.98
CLSTN3-214ENST00000542663 RABGGTBP53611 331 aa21.19■□□□□ 0.98
CLSTN3-214ENST00000542663 PSMC6P62333 389 aa21.19■□□□□ 0.98
CLSTN3-214ENST00000542663 MRPS5P82675 430 aaKnown RBP21.19■□□□□ 0.98
CLSTN3-214ENST00000542663 TFAP4Q01664 338 aa21.19■□□□□ 0.98
CLSTN3-214ENST00000542663 MUM1L1Q5H9M0 696 aa21.19■□□□□ 0.98
CLSTN3-214ENST00000542663 C20orf194Q5TEA3 1177 aa21.19■□□□□ 0.98
CLSTN3-214ENST00000542663 RASGRP2Q7LDG7 609 aa21.19■□□□□ 0.98
CLSTN3-214ENST00000542663 FAM160B2Q86V87 743 aa21.19■□□□□ 0.98
CLSTN3-214ENST00000542663 CHURC1Q8WUH1 139 aa21.19■□□□□ 0.98
CLSTN3-214ENST00000542663 STAG1Q8WVM7 1258 aa21.19■□□□□ 0.98
CLSTN3-214ENST00000542663 MTIF3Q9H2K0 278 aaKnown RBP21.19■□□□□ 0.98
CLSTN3-214ENST00000542663 ALAS1P13196 640 aa21.18■□□□□ 0.98
CLSTN3-214ENST00000542663 MCCP23508 829 aa21.18■□□□□ 0.98
CLSTN3-214ENST00000542663 SNAP25P60880 206 aa21.18■□□□□ 0.98
CLSTN3-214ENST00000542663 TKFCQ3LXA3 575 aa21.18■□□□□ 0.98
CLSTN3-214ENST00000542663 FBXO16Q8IX29 292 aaPredicted RBP21.18■□□□□ 0.98
CLSTN3-214ENST00000542663 AP5M1Q9H0R1 490 aa21.18■□□□□ 0.98
CLSTN3-214ENST00000542663 CYP39A1Q9NYL5 469 aa21.18■□□□□ 0.98
CLSTN3-214ENST00000542663 ISY1Q9ULR0 285 aaKnown RBP21.18■□□□□ 0.98
CLSTN3-214ENST00000542663 TET1Q8NFU7 2136 aa21.17■□□□□ 0.98
CLSTN3-214ENST00000542663 PLA2G6O60733 806 aa21.17■□□□□ 0.98
CLSTN3-214ENST00000542663 MYOGP15173 224 aa21.17■□□□□ 0.98
CLSTN3-214ENST00000542663 SLC1A4P43007 532 aa21.17■□□□□ 0.98
CLSTN3-214ENST00000542663 PDE4BQ07343 736 aa21.17■□□□□ 0.98
CLSTN3-214ENST00000542663 IQSEC1Q6DN90 963 aa21.17■□□□□ 0.98
CLSTN3-214ENST00000542663 KCTD1Q719H9 257 aa21.17■□□□□ 0.98
CLSTN3-214ENST00000542663 EEPD1Q7L9B9 569 aa21.17■□□□□ 0.98
CLSTN3-214ENST00000542663 SCLYQ96I15 445 aa21.17■□□□□ 0.98
CLSTN3-214ENST00000542663 PURBQ96QR8 312 aaKnown RBP21.17■□□□□ 0.98
CLSTN3-214ENST00000542663 SEZ6LQ9BYH1 1024 aa21.17■□□□□ 0.98
CLSTN3-214ENST00000542663 Q9Y3F1 56 aa21.17■□□□□ 0.98
CLSTN3-214ENST00000542663 PRRC2BQ5JSZ5 2229 aaKnown RBP21.17■□□□□ 0.98
CLSTN3-214ENST00000542663 COL4A4P53420 1690 aaPredicted RBP21.16■□□□□ 0.98
CLSTN3-214ENST00000542663 PPARAQ07869 468 aa21.16■□□□□ 0.98
CLSTN3-214ENST00000542663 IKQ13123 557 aaPredicted RBP21.16■□□□□ 0.98
CLSTN3-214ENST00000542663 MORC4Q8TE76 937 aa21.16■□□□□ 0.98
CLSTN3-214ENST00000542663 UHRF1Q96T88 793 aaPredicted RBP21.16■□□□□ 0.98
CLSTN3-214ENST00000542663 IL17RBQ9NRM6 502 aa21.16■□□□□ 0.98
CLSTN3-214ENST00000542663 ZEB2O60315 1214 aa21.15■□□□□ 0.98
CLSTN3-214ENST00000542663 RCSD1Q6JBY9 416 aa21.15■□□□□ 0.98
CLSTN3-214ENST00000542663 GPATCH3Q96I76 525 aa21.15■□□□□ 0.98
CLSTN3-214ENST00000542663 ALDH8A1Q9H2A2 487 aaPredicted RBP21.15■□□□□ 0.98
CLSTN3-214ENST00000542663 DCTPP1Q9H773 170 aa21.15■□□□□ 0.98
CLSTN3-214ENST00000542663 PRR12Q9ULL5 1215 aa21.15■□□□□ 0.98
CLSTN3-214ENST00000542663 PCDHA11Q9Y5I1 949 aa21.15■□□□□ 0.98
CLSTN3-214ENST00000542663 SLC4A7Q9Y6M7 1214 aa21.15■□□□□ 0.98
CLSTN3-214ENST00000542663 FOXP2O15409 715 aa21.14■□□□□ 0.97
CLSTN3-214ENST00000542663 NMT2O60551 498 aa21.14■□□□□ 0.97
CLSTN3-214ENST00000542663 PPP2R2DQ66LE6 453 aa21.14■□□□□ 0.97
CLSTN3-214ENST00000542663 RPUSD2Q8IZ73 545 aaKnown RBP21.14■□□□□ 0.97
CLSTN3-214ENST00000542663 NACAP1Q9BZK3 213 aa21.14■□□□□ 0.97
CLSTN3-214ENST00000542663 NAPBQ9H115 298 aa21.14■□□□□ 0.97
CLSTN3-214ENST00000542663 VTA1Q9NP79 307 aa21.14■□□□□ 0.97
CLSTN3-214ENST00000542663 INCENPQ9NQS7 918 aa21.14■□□□□ 0.97
CLSTN3-214ENST00000542663 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.14■□□□□ 0.97
CLSTN3-214ENST00000542663 NSMFQ6X4W1 530 aa21.13■□□□□ 0.97
CLSTN3-214ENST00000542663 KIAA1211Q6ZU35 1233 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms