RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 SEZ6LQ9BYH1 1024 aa18.3■□□□□ 0.52
RTN3-211ENST00000542238 IL23AQ9NPF7 189 aa18.3■□□□□ 0.52
RTN3-211ENST00000542238 MSRAQ9UJ68 235 aa18.3■□□□□ 0.52
RTN3-211ENST00000542238 STX8Q9UNK0 236 aa18.3■□□□□ 0.52
RTN3-211ENST00000542238 ZNF536O15090 1300 aa18.29■□□□□ 0.52
RTN3-211ENST00000542238 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.29■□□□□ 0.52
RTN3-211ENST00000542238 SOWAHBA6NEL2 793 aa18.29■□□□□ 0.52
RTN3-211ENST00000542238 TSPY2A6NKD2 308 aa18.29■□□□□ 0.52
RTN3-211ENST00000542238 GRXCR1A8MXD5 290 aa18.29■□□□□ 0.52
RTN3-211ENST00000542238 PLA2G6O60733 806 aa18.29■□□□□ 0.52
RTN3-211ENST00000542238 CYP2C18P33260 490 aa18.29■□□□□ 0.52
RTN3-211ENST00000542238 PBX2P40425 430 aa18.29■□□□□ 0.52
RTN3-211ENST00000542238 RAB30Q15771 203 aa18.29■□□□□ 0.52
RTN3-211ENST00000542238 FSCN1Q16658 493 aaKnown RBP18.29■□□□□ 0.52
RTN3-211ENST00000542238 TJAP1Q5JTD0 557 aa18.29■□□□□ 0.52
RTN3-211ENST00000542238 RCSD1Q6JBY9 416 aa18.29■□□□□ 0.52
RTN3-211ENST00000542238 HIPK3Q9H422 1215 aa18.29■□□□□ 0.52
RTN3-211ENST00000542238 PRDM6Q9NQX0 595 aa18.29■□□□□ 0.52
RTN3-211ENST00000542238 GNEQ9Y223 722 aaKnown RBP18.29■□□□□ 0.52
RTN3-211ENST00000542238 DYNC1LI2O43237 492 aaPredicted RBP18.28■□□□□ 0.52
RTN3-211ENST00000542238 FGBP02675 491 aa18.28■□□□□ 0.52
RTN3-211ENST00000542238 ITGA7Q13683 1181 aa18.28■□□□□ 0.52
RTN3-211ENST00000542238 ZMYM1Q5SVZ6 1142 aa18.28■□□□□ 0.52
RTN3-211ENST00000542238 IQSEC1Q6DN90 963 aa18.28■□□□□ 0.52
RTN3-211ENST00000542238 KCTD1Q719H9 257 aa18.28■□□□□ 0.52
RTN3-211ENST00000542238 USP38Q8NB14 1042 aa18.28■□□□□ 0.52
RTN3-211ENST00000542238 SLC43A3Q8NBI5 491 aa18.28■□□□□ 0.52
RTN3-211ENST00000542238 HERVK_113Q902F9 699 aa18.28■□□□□ 0.52
RTN3-211ENST00000542238 ASTN1O14525 1302 aa18.27■□□□□ 0.52
RTN3-211ENST00000542238 GBF1Q92538 1859 aa18.27■□□□□ 0.52
RTN3-211ENST00000542238 LRRC37A2A6NM11 1700 aa18.27■□□□□ 0.52
RTN3-211ENST00000542238 PPM1EQ8WY54 764 aa18.27■□□□□ 0.52
RTN3-211ENST00000542238 PRDM12Q9H4Q4 367 aa18.27■□□□□ 0.52
RTN3-211ENST00000542238 PRR12Q9ULL5 1215 aa18.27■□□□□ 0.52
RTN3-211ENST00000542238 Q9Y3F1 56 aa18.27■□□□□ 0.52
RTN3-211ENST00000542238 SPTBN5Q9NRC6 3674 aaKnown RBP18.26■□□□□ 0.51
RTN3-211ENST00000542238 SMPD1P17405 629 aa18.26■□□□□ 0.51
RTN3-211ENST00000542238 AKNAD1Q5T1N1 836 aa18.26■□□□□ 0.51
RTN3-211ENST00000542238 NSMFQ6X4W1 530 aa18.26■□□□□ 0.51
RTN3-211ENST00000542238 EEPD1Q7L9B9 569 aa18.26■□□□□ 0.51
RTN3-211ENST00000542238 PI4K2BQ8TCG2 481 aa18.26■□□□□ 0.51
RTN3-211ENST00000542238 CYP39A1Q9NYL5 469 aa18.26■□□□□ 0.51
RTN3-211ENST00000542238 CCPG1Q9ULG6 757 aa18.26■□□□□ 0.51
RTN3-211ENST00000542238 RANBP6O60518 1105 aaKnown RBP18.25■□□□□ 0.51
RTN3-211ENST00000542238 SNAP25P60880 206 aa18.25■□□□□ 0.51
RTN3-211ENST00000542238 CTDSPL2Q05D32 466 aa18.25■□□□□ 0.51
RTN3-211ENST00000542238 MUM1L1Q5H9M0 696 aa18.25■□□□□ 0.51
RTN3-211ENST00000542238 FBXO16Q8IX29 292 aaPredicted RBP18.25■□□□□ 0.51
RTN3-211ENST00000542238 RPUSD2Q8IZ73 545 aaKnown RBP18.25■□□□□ 0.51
RTN3-211ENST00000542238 SLC28A3Q9HAS3 691 aa18.25■□□□□ 0.51
RTN3-211ENST00000542238 VTA1Q9NP79 307 aa18.25■□□□□ 0.51
RTN3-211ENST00000542238 PDGFCQ9NRA1 345 aa18.25■□□□□ 0.51
RTN3-211ENST00000542238 IL17RBQ9NRM6 502 aa18.25■□□□□ 0.51
RTN3-211ENST00000542238 ADD3Q9UEY8 706 aaKnown RBP18.25■□□□□ 0.51
RTN3-211ENST00000542238 MTMR7Q9Y216 660 aa18.25■□□□□ 0.51
RTN3-211ENST00000542238 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.25■□□□□ 0.51
RTN3-211ENST00000542238 ICAM1P05362 532 aa18.24■□□□□ 0.51
RTN3-211ENST00000542238 CCL23P55773 120 aa18.24■□□□□ 0.51
RTN3-211ENST00000542238 CCDC96Q2M329 555 aa18.24■□□□□ 0.51
RTN3-211ENST00000542238 TAPT1Q6NXT6 567 aa18.24■□□□□ 0.51
RTN3-211ENST00000542238 KIAA1211Q6ZU35 1233 aa18.24■□□□□ 0.51
RTN3-211ENST00000542238 OTOP2Q7RTS6 562 aa18.24■□□□□ 0.51
RTN3-211ENST00000542238 DCAF4Q8WV16 495 aa18.24■□□□□ 0.51
RTN3-211ENST00000542238 ATXN2LQ8WWM7 1075 aaKnown RBP18.24■□□□□ 0.51
RTN3-211ENST00000542238 NOC4LQ9BVI4 516 aaKnown RBP18.24■□□□□ 0.51
RTN3-211ENST00000542238 TRPV6Q9H1D0 765 aa18.24■□□□□ 0.51
RTN3-211ENST00000542238 CXXC1Q9P0U4 656 aaPredicted RBP18.24■□□□□ 0.51
RTN3-211ENST00000542238 LCTP09848 1927 aa18.23■□□□□ 0.51
RTN3-211ENST00000542238 TNFRSF10AO00220 468 aa18.23■□□□□ 0.51
RTN3-211ENST00000542238 B4GALT4O60513 344 aa18.23■□□□□ 0.51
RTN3-211ENST00000542238 NMT2O60551 498 aa18.23■□□□□ 0.51
RTN3-211ENST00000542238 MX1P20591 662 aa18.23■□□□□ 0.51
RTN3-211ENST00000542238 IGFBP4P22692 258 aa18.23■□□□□ 0.51
RTN3-211ENST00000542238 NKX2-4Q9H2Z4 354 aa18.23■□□□□ 0.51
RTN3-211ENST00000542238 THEGQ9P2T0 379 aa18.23■□□□□ 0.51
RTN3-211ENST00000542238 ZBTB47Q9UFB7 747 aaPredicted RBP18.23■□□□□ 0.51
RTN3-211ENST00000542238 DDX49Q9Y6V7 483 aaKnown RBP18.23■□□□□ 0.51
RTN3-211ENST00000542238 GRIN2DO15399 1336 aa18.23■□□□□ 0.51
RTN3-211ENST00000542238 UMODL1Q5DID0 1318 aa18.23■□□□□ 0.51
RTN3-211ENST00000542238 PSMC6P62333 389 aa18.22■□□□□ 0.51
RTN3-211ENST00000542238 DUSP28Q4G0W2 176 aa18.22■□□□□ 0.51
RTN3-211ENST00000542238 OTUD7AQ8TE49 926 aaPredicted RBP18.22■□□□□ 0.51
RTN3-211ENST00000542238 MORC4Q8TE76 937 aa18.22■□□□□ 0.51
RTN3-211ENST00000542238 INCENPQ9NQS7 918 aa18.22■□□□□ 0.51
RTN3-211ENST00000542238 TOMM22Q9NS69 142 aa18.22■□□□□ 0.51
RTN3-211ENST00000542238 POLR3EQ9NVU0 708 aa18.22■□□□□ 0.51
RTN3-211ENST00000542238 ANAPC4Q9UJX5 808 aa18.22■□□□□ 0.51
RTN3-211ENST00000542238 SLC4A7Q9Y6M7 1214 aa18.22■□□□□ 0.51
RTN3-211ENST00000542238 CHD9Q3L8U1 2897 aa18.22■□□□□ 0.51
RTN3-211ENST00000542238 LOC102724159A0A0B4J2E5 919 aa18.21■□□□□ 0.51
RTN3-211ENST00000542238 ORC4O43929 436 aa18.21■□□□□ 0.51
RTN3-211ENST00000542238 SUPT20HL2P0C7V6 817 aa18.21■□□□□ 0.51
RTN3-211ENST00000542238 PTGS1P23219 599 aa18.21■□□□□ 0.51
RTN3-211ENST00000542238 BAATQ14032 418 aaPredicted RBP18.21■□□□□ 0.51
RTN3-211ENST00000542238 PWP2Q15269 919 aaKnown RBP18.21■□□□□ 0.51
RTN3-211ENST00000542238 WDR11Q9BZH6 1224 aa18.21■□□□□ 0.51
RTN3-211ENST00000542238 ALDH8A1Q9H2A2 487 aaPredicted RBP18.21■□□□□ 0.51
RTN3-211ENST00000542238 RANBP17Q9H2T7 1088 aaKnown RBP18.21■□□□□ 0.51
RTN3-211ENST00000542238 GPHNQ9NQX3 736 aaPredicted RBP18.21■□□□□ 0.51
RTN3-211ENST00000542238 PTPDC1A2A3K4 754 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 164.5 ms