RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 NEBLO76041 1014 aa14.26□□□□□ -0.13
SFSWAP-209ENST00000540469 MAGEA1P43355 309 aa14.26□□□□□ -0.13
SFSWAP-209ENST00000540469 CARSP49589 748 aaKnown RBP14.26□□□□□ -0.13
SFSWAP-209ENST00000540469 RBM12Q9NTZ6 932 aaKnown RBP14.26□□□□□ -0.13
SFSWAP-209ENST00000540469 ERCC3P19447 782 aa14.26□□□□□ -0.13
SFSWAP-209ENST00000540469 GBP2P32456 591 aaPredicted RBP14.26□□□□□ -0.13
SFSWAP-209ENST00000540469 UBA7P41226 1012 aa14.26□□□□□ -0.13
SFSWAP-209ENST00000540469 PMS1P54277 932 aaKnown RBP14.26□□□□□ -0.13
SFSWAP-209ENST00000540469 HAUS3Q68CZ6 603 aa14.26□□□□□ -0.13
SFSWAP-209ENST00000540469 PCDHA13Q9Y5I0 950 aa14.26□□□□□ -0.13
SFSWAP-209ENST00000540469 BAZ2BQ9UIF8 2168 aaKnown RBP14.25□□□□□ -0.13
SFSWAP-209ENST00000540469 ITGA6P23229 1130 aa14.25□□□□□ -0.13
SFSWAP-209ENST00000540469 PTGISQ16647 500 aa14.25□□□□□ -0.13
SFSWAP-209ENST00000540469 CFAP221Q4G0U5 840 aa14.25□□□□□ -0.13
SFSWAP-209ENST00000540469 IFIT1BQ5T764 474 aaKnown RBP14.25□□□□□ -0.13
SFSWAP-209ENST00000540469 MYCBPAPQ8TBZ2 947 aa14.25□□□□□ -0.13
SFSWAP-209ENST00000540469 MS4A14Q96JA4 679 aa14.25□□□□□ -0.13
SFSWAP-209ENST00000540469 SLC40A1Q9NP59 571 aa14.25□□□□□ -0.13
SFSWAP-209ENST00000540469 ANKRD18BA2A2Z9 1011 aa14.25□□□□□ -0.13
SFSWAP-209ENST00000540469 FNTAP49354 379 aa14.25□□□□□ -0.13
SFSWAP-209ENST00000540469 NAA25Q14CX7 972 aa14.25□□□□□ -0.13
SFSWAP-209ENST00000540469 ARFGAP2Q8N6H7 521 aa14.25□□□□□ -0.13
SFSWAP-209ENST00000540469 ESR2Q92731 530 aa14.25□□□□□ -0.13
SFSWAP-209ENST00000540469 CNOT6LQ96LI5 555 aaKnown RBP14.25□□□□□ -0.13
SFSWAP-209ENST00000540469 VCPKMTQ9H867 229 aa14.25□□□□□ -0.13
SFSWAP-209ENST00000540469 ADAMTSL3P82987 1691 aa14.25□□□□□ -0.13
SFSWAP-209ENST00000540469 TMEM94Q12767 1356 aa14.25□□□□□ -0.13
SFSWAP-209ENST00000540469 ZSCAN5CA6NGD5 496 aaPredicted RBP14.25□□□□□ -0.13
SFSWAP-209ENST00000540469 PLEKHA8P1O95397 391 aa14.25□□□□□ -0.13
SFSWAP-209ENST00000540469 EPB41P11171 864 aaKnown RBP14.25□□□□□ -0.13
SFSWAP-209ENST00000540469 TMED8Q6PL24 325 aaPredicted RBP14.25□□□□□ -0.13
SFSWAP-209ENST00000540469 CACNA2D4Q7Z3S7 1137 aa14.25□□□□□ -0.13
SFSWAP-209ENST00000540469 IRF2BP1Q8IU81 584 aa14.25□□□□□ -0.13
SFSWAP-209ENST00000540469 PDS5AQ29RF7 1337 aaKnown RBP14.25□□□□□ -0.13
SFSWAP-209ENST00000540469 RTL9Q8NET4 1388 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 RPSAP08865 295 aaKnown RBP14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 UQCRFS1P1P0C7P4 283 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 KIF11P52732 1056 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 ATP2C1P98194 919 aaPredicted RBP14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 KDM7AQ6ZMT4 941 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 FAM114A1Q8IWE2 563 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 ADSSL1Q8N142 457 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 CARD10Q9BWT7 1032 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 TANGO6Q9C0B7 1094 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 THAP9Q9H5L6 903 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 LRP2BPQ9P2M1 347 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 EIF4A3P38919 411 aaKnown RBP14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 MDH1P40925 334 aaKnown RBP14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 SF3A3Q12874 501 aaKnown RBP eCLIP14.24□□□□□ -0.135e-7■■■■■ 31.3
SFSWAP-209ENST00000540469 ENOX2Q16206 610 aaKnown RBP14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 PDXDC2PQ6P474 469 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 KRT12Q99456 494 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 BACH1O14867 736 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 CYP27B1O15528 508 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 FAM153BP0C7A2 387 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 SRGNP10124 158 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 SMTNP53814 917 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 DDR1Q08345 913 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 FAM153CQ494X1 144 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 KIF6Q6ZMV9 814 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 KLHL7Q8IXQ5 586 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 SYNE4Q8N205 404 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 MTRQ99707 1265 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 PHF20Q9BVI0 1012 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 SH2D4AQ9H788 454 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 FAM153AQ9UHL3 310 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 FBXO3Q9UK99 471 aa14.24□□□□□ -0.13
SFSWAP-209ENST00000540469 RASSF7Q02833 373 aa14.23□□□□□ -0.13
SFSWAP-209ENST00000540469 MEA1Q16626 185 aa14.23□□□□□ -0.13
SFSWAP-209ENST00000540469 RRAGAQ7L523 313 aa14.23□□□□□ -0.13
SFSWAP-209ENST00000540469 RETREG2Q8NC44 543 aa14.23□□□□□ -0.13
SFSWAP-209ENST00000540469 ATP6V1G3Q96LB4 118 aa14.23□□□□□ -0.13
SFSWAP-209ENST00000540469 NOX5Q96PH1 765 aa14.23□□□□□ -0.13
SFSWAP-209ENST00000540469 NFAT5O94916 1531 aa14.23□□□□□ -0.13
SFSWAP-209ENST00000540469 A0A1B0GUA9 196 aa14.23□□□□□ -0.13
SFSWAP-209ENST00000540469 LCORLQ8N3X6 602 aa14.23□□□□□ -0.13
SFSWAP-209ENST00000540469 GREM2Q9H772 168 aa14.23□□□□□ -0.13
SFSWAP-209ENST00000540469 ABCC12Q96J65 1359 aa14.23□□□□□ -0.13
SFSWAP-209ENST00000540469 ZNF233A6NK53 670 aa14.23□□□□□ -0.13
SFSWAP-209ENST00000540469 GSG1L2A8MUP6 293 aa14.23□□□□□ -0.13
SFSWAP-209ENST00000540469 GCOM1H8Y6P7 765 aaPredicted RBP14.23□□□□□ -0.13
SFSWAP-209ENST00000540469 MYZAPP0CAP1 466 aa14.23□□□□□ -0.13
SFSWAP-209ENST00000540469 PDHBP11177 359 aa14.23□□□□□ -0.13
SFSWAP-209ENST00000540469 ASIC1P78348 528 aa14.23□□□□□ -0.13
SFSWAP-209ENST00000540469 PDE4DQ08499 809 aa14.23□□□□□ -0.13
SFSWAP-209ENST00000540469 PARP9Q8IXQ6 854 aa14.23□□□□□ -0.13
SFSWAP-209ENST00000540469 STAG1Q8WVM7 1258 aa14.23□□□□□ -0.13
SFSWAP-209ENST00000540469 CAVIN3Q969G5 261 aa14.23□□□□□ -0.13
SFSWAP-209ENST00000540469 TACO1Q9BSH4 297 aaKnown RBP14.23□□□□□ -0.13
SFSWAP-209ENST00000540469 PLAAQ9Y263 795 aa14.23□□□□□ -0.13
SFSWAP-209ENST00000540469 MYH10P35580 1976 aa14.23□□□□□ -0.13
SFSWAP-209ENST00000540469 FAM107AO95990 144 aa14.22□□□□□ -0.13
SFSWAP-209ENST00000540469 GLI1P08151 1106 aa14.22□□□□□ -0.13
SFSWAP-209ENST00000540469 ALX1Q15699 326 aa14.22□□□□□ -0.13
SFSWAP-209ENST00000540469 CPLX4Q7Z7G2 160 aa14.22□□□□□ -0.13
SFSWAP-209ENST00000540469 ZNF507Q8TCN5 953 aa14.22□□□□□ -0.13
SFSWAP-209ENST00000540469 RUBCNQ92622 972 aa14.22□□□□□ -0.13
SFSWAP-209ENST00000540469 HAUS2Q9NVX0 235 aa14.22□□□□□ -0.13
SFSWAP-209ENST00000540469 C5P01031 1676 aa14.22□□□□□ -0.13
SFSWAP-209ENST00000540469 BICDL2A1A5D9 508 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms