RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 Q9Y3F1 56 aa13.9□□□□□ -0.18
CLSTN3-209ENST00000539982 XIRP2A4UGR9 3374 aa13.9□□□□□ -0.18
CLSTN3-209ENST00000539982 TRANK1O15050 2925 aa13.89□□□□□ -0.19
CLSTN3-209ENST00000539982 SOWAHBA6NEL2 793 aa13.89□□□□□ -0.19
CLSTN3-209ENST00000539982 ZBBXA8MT70 800 aa13.89□□□□□ -0.19
CLSTN3-209ENST00000539982 GSG1L2A8MUP6 293 aa13.89□□□□□ -0.19
CLSTN3-209ENST00000539982 MINDY4BA8MYZ0 360 aa13.89□□□□□ -0.19
CLSTN3-209ENST00000539982 PFKMP08237 780 aa13.89□□□□□ -0.19
CLSTN3-209ENST00000539982 SMPD1P17405 629 aa13.89□□□□□ -0.19
CLSTN3-209ENST00000539982 TMEM67Q5HYA8 995 aa13.89□□□□□ -0.19
CLSTN3-209ENST00000539982 GIMAP6Q6P9H5 292 aa13.89□□□□□ -0.19
CLSTN3-209ENST00000539982 ZNF444Q8N0Y2 327 aaPredicted RBP13.89□□□□□ -0.19
CLSTN3-209ENST00000539982 GMCL1P1Q8NEA9 526 aa13.89□□□□□ -0.19
CLSTN3-209ENST00000539982 SCLYQ96I15 445 aa13.89□□□□□ -0.19
CLSTN3-209ENST00000539982 ACAD9Q9H845 621 aa13.89□□□□□ -0.19
CLSTN3-209ENST00000539982 HOMER2Q9NSB8 354 aa13.89□□□□□ -0.19
CLSTN3-209ENST00000539982 MTCH2Q9Y6C9 303 aa13.89□□□□□ -0.19
CLSTN3-209ENST00000539982 RFXAPO00287 272 aa13.88□□□□□ -0.19
CLSTN3-209ENST00000539982 GTPBP6O43824 516 aaPredicted RBP13.88□□□□□ -0.19
CLSTN3-209ENST00000539982 HMMRO75330 724 aa13.88□□□□□ -0.19
CLSTN3-209ENST00000539982 BMP3P12645 472 aa13.88□□□□□ -0.19
CLSTN3-209ENST00000539982 PSMC6P62333 389 aa13.88□□□□□ -0.19
CLSTN3-209ENST00000539982 PANK1Q8TE04 598 aa13.88□□□□□ -0.19
CLSTN3-209ENST00000539982 LRFN3Q9BTN0 628 aa13.88□□□□□ -0.19
CLSTN3-209ENST00000539982 EPHX3Q9H6B9 360 aa13.88□□□□□ -0.19
CLSTN3-209ENST00000539982 ZNF287Q9HBT7 754 aa13.88□□□□□ -0.19
CLSTN3-209ENST00000539982 A1CFQ9NQ94 594 aaKnown RBP13.88□□□□□ -0.19
CLSTN3-209ENST00000539982 MTMR4Q9NYA4 1195 aa13.88□□□□□ -0.19
CLSTN3-209ENST00000539982 COG5Q9UP83 839 aa13.88□□□□□ -0.19
CLSTN3-209ENST00000539982 COG6Q9Y2V7 657 aa13.88□□□□□ -0.19
CLSTN3-209ENST00000539982 TLL1O43897 1013 aa13.87□□□□□ -0.19
CLSTN3-209ENST00000539982 TTLL1O95922 423 aa13.87□□□□□ -0.19
CLSTN3-209ENST00000539982 CA3P07451 260 aa13.87□□□□□ -0.19
CLSTN3-209ENST00000539982 SUPT20HL2P0C7V6 817 aa13.87□□□□□ -0.19
CLSTN3-209ENST00000539982 TTLL4Q14679 1199 aa13.87□□□□□ -0.19
CLSTN3-209ENST00000539982 TKFCQ3LXA3 575 aa13.87□□□□□ -0.19
CLSTN3-209ENST00000539982 SLFN13Q68D06 897 aa13.87□□□□□ -0.19
CLSTN3-209ENST00000539982 TAPT1Q6NXT6 567 aa13.87□□□□□ -0.19
CLSTN3-209ENST00000539982 SIRT2Q8IXJ6 389 aa13.87□□□□□ -0.19
CLSTN3-209ENST00000539982 CEP95Q96GE4 821 aa13.87□□□□□ -0.19
CLSTN3-209ENST00000539982 ALDH8A1Q9H2A2 487 aaPredicted RBP13.87□□□□□ -0.19
CLSTN3-209ENST00000539982 PDGFCQ9NRA1 345 aa13.87□□□□□ -0.19
CLSTN3-209ENST00000539982 RNF146Q9NTX7 359 aa13.87□□□□□ -0.19
CLSTN3-209ENST00000539982 HCN4Q9Y3Q4 1203 aa13.87□□□□□ -0.19
CLSTN3-209ENST00000539982 PRRC2BQ5JSZ5 2229 aaKnown RBP13.86□□□□□ -0.19
CLSTN3-209ENST00000539982 TMEM232C9JQI7 657 aa13.86□□□□□ -0.19
CLSTN3-209ENST00000539982 PTGS1P23219 599 aa13.86□□□□□ -0.19
CLSTN3-209ENST00000539982 PHOSPHO2Q8TCD6 241 aa13.86□□□□□ -0.19
CLSTN3-209ENST00000539982 CHURC1Q8WUH1 139 aa13.86□□□□□ -0.19
CLSTN3-209ENST00000539982 TRERF1Q96PN7 1200 aa13.86□□□□□ -0.19
CLSTN3-209ENST00000539982 CERS4Q9HA82 394 aa13.86□□□□□ -0.19
CLSTN3-209ENST00000539982 ZNF536O15090 1300 aa13.86□□□□□ -0.19
CLSTN3-209ENST00000539982 PRDM1O75626 825 aa13.85□□□□□ -0.19
CLSTN3-209ENST00000539982 ACTN1P12814 892 aa13.85□□□□□ -0.19
CLSTN3-209ENST00000539982 STAT2P52630 851 aa13.85□□□□□ -0.19
CLSTN3-209ENST00000539982 TMEM31Q5JXX7 168 aa13.85□□□□□ -0.19
CLSTN3-209ENST00000539982 TMEM63BQ5T3F8 832 aa13.85□□□□□ -0.19
CLSTN3-209ENST00000539982 KIAA1211Q6ZU35 1233 aa13.85□□□□□ -0.19
CLSTN3-209ENST00000539982 EEPD1Q7L9B9 569 aa13.85□□□□□ -0.19
CLSTN3-209ENST00000539982 DEFB128Q7Z7B8 93 aa13.85□□□□□ -0.19
CLSTN3-209ENST00000539982 FAM160B2Q86V87 743 aa13.85□□□□□ -0.19
CLSTN3-209ENST00000539982 LRRC47Q8N1G4 583 aaKnown RBP13.85□□□□□ -0.19
CLSTN3-209ENST00000539982 STAG1Q8WVM7 1258 aa13.85□□□□□ -0.19
CLSTN3-209ENST00000539982 HLA-CQ95604 372 aa13.85□□□□□ -0.19
CLSTN3-209ENST00000539982 VTA1Q9NP79 307 aa13.85□□□□□ -0.19
CLSTN3-209ENST00000539982 TRMT13Q9NUP7 481 aaKnown RBP13.85□□□□□ -0.19
CLSTN3-209ENST00000539982 MYH4Q9Y623 1939 aa13.85□□□□□ -0.19
CLSTN3-209ENST00000539982 MYH7P12883 1935 aa13.84□□□□□ -0.19
CLSTN3-209ENST00000539982 EPOPA6NHQ4 379 aa13.84□□□□□ -0.19
CLSTN3-209ENST00000539982 PLA2G6O60733 806 aa13.84□□□□□ -0.19
CLSTN3-209ENST00000539982 CYP2C9P11712 490 aa13.84□□□□□ -0.19
CLSTN3-209ENST00000539982 ALAS1P13196 640 aa13.84□□□□□ -0.19
CLSTN3-209ENST00000539982 RFC2P35250 354 aa13.84□□□□□ -0.19
CLSTN3-209ENST00000539982 DUSP28Q4G0W2 176 aa13.84□□□□□ -0.19
CLSTN3-209ENST00000539982 FBXO16Q8IX29 292 aaPredicted RBP13.84□□□□□ -0.19
CLSTN3-209ENST00000539982 NEDD1Q8NHV4 660 aa13.84□□□□□ -0.19
CLSTN3-209ENST00000539982 MORC4Q8TE76 937 aa13.84□□□□□ -0.19
CLSTN3-209ENST00000539982 GMCL1Q96IK5 515 aa13.84□□□□□ -0.19
CLSTN3-209ENST00000539982 SLC9A7Q96T83 725 aa13.84□□□□□ -0.19
CLSTN3-209ENST00000539982 POLR3EQ9NVU0 708 aa13.84□□□□□ -0.19
CLSTN3-209ENST00000539982 CYP39A1Q9NYL5 469 aa13.84□□□□□ -0.19
CLSTN3-209ENST00000539982 DDX49Q9Y6V7 483 aaKnown RBP13.84□□□□□ -0.19
CLSTN3-209ENST00000539982 TNKSO95271 1327 aa13.84□□□□□ -0.19
CLSTN3-209ENST00000539982 KIF28PB7ZC32 967 aa13.83□□□□□ -0.2
CLSTN3-209ENST00000539982 GPR37L1O60883 481 aa13.83□□□□□ -0.2
CLSTN3-209ENST00000539982 TSPY3P0CV98 308 aa13.83□□□□□ -0.2
CLSTN3-209ENST00000539982 TSPY8P0CW00 308 aa13.83□□□□□ -0.2
CLSTN3-209ENST00000539982 MS4A1P11836 297 aa13.83□□□□□ -0.2
CLSTN3-209ENST00000539982 GNAT2P19087 354 aa13.83□□□□□ -0.2
CLSTN3-209ENST00000539982 SLC1A4P43007 532 aa13.83□□□□□ -0.2
CLSTN3-209ENST00000539982 TDO2P48775 406 aa13.83□□□□□ -0.2
CLSTN3-209ENST00000539982 TAP1Q03518 808 aa13.83□□□□□ -0.2
CLSTN3-209ENST00000539982 IKQ13123 557 aaPredicted RBP13.83□□□□□ -0.2
CLSTN3-209ENST00000539982 DIEXFQ68CQ4 756 aaKnown RBP13.83□□□□□ -0.2
CLSTN3-209ENST00000539982 KRT40Q6A162 431 aa13.83□□□□□ -0.2
CLSTN3-209ENST00000539982 ARNTL2Q8WYA1 636 aa13.83□□□□□ -0.2
CLSTN3-209ENST00000539982 APPBP2Q92624 585 aa13.83□□□□□ -0.2
CLSTN3-209ENST00000539982 OSBP2Q969R2 916 aa13.83□□□□□ -0.2
CLSTN3-209ENST00000539982 ZBTB40Q9NUA8 1239 aa13.83□□□□□ -0.2
CLSTN3-209ENST00000539982 ISY1Q9ULR0 285 aaKnown RBP13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms