RNA–Protein interactions for RNA: ENST00000539442.1

LEMD3-202, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 932 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-202ENST00000539442 PABPC4Q13310 644 aaKnown RBP eCLIP12.23□□□□□ -0.45
LEMD3-202ENST00000539442 COG2Q14746 738 aa12.23□□□□□ -0.45
LEMD3-202ENST00000539442 NOSTRINQ8IVI9 506 aa12.23□□□□□ -0.45
LEMD3-202ENST00000539442 BLIDQ8IZY5 108 aa12.23□□□□□ -0.45
LEMD3-202ENST00000539442 COA7Q96BR5 231 aa12.23□□□□□ -0.45
LEMD3-202ENST00000539442 WNK4Q96J92 1243 aa12.23□□□□□ -0.45
LEMD3-202ENST00000539442 SLC38A10Q9HBR0 1119 aa12.23□□□□□ -0.45
LEMD3-202ENST00000539442 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.23□□□□□ -0.45
LEMD3-202ENST00000539442 AGTPBP1Q9UPW5 1226 aa12.23□□□□□ -0.45
LEMD3-202ENST00000539442 PCDHA1Q9Y5I3 950 aa12.23□□□□□ -0.45
LEMD3-202ENST00000539442 BAZ2BQ9UIF8 2168 aaKnown RBP12.22□□□□□ -0.45
LEMD3-202ENST00000539442 PTPRFP10586 1907 aa12.22□□□□□ -0.45
LEMD3-202ENST00000539442 SMCO2A6NFE2 343 aa12.22□□□□□ -0.45
LEMD3-202ENST00000539442 BTBD18B2RXH4 712 aa12.22□□□□□ -0.45
LEMD3-202ENST00000539442 KIF28PB7ZC32 967 aa12.22□□□□□ -0.45
LEMD3-202ENST00000539442 M0R2N6 131 aa12.22□□□□□ -0.45
LEMD3-202ENST00000539442 ZBED4O75132 1171 aa12.22□□□□□ -0.45
LEMD3-202ENST00000539442 ICAM1P05362 532 aa12.22□□□□□ -0.45
LEMD3-202ENST00000539442 CETPP11597 493 aa12.22□□□□□ -0.45
LEMD3-202ENST00000539442 GJA5P36382 358 aa12.22□□□□□ -0.45
LEMD3-202ENST00000539442 ADCY7P51828 1080 aa12.22□□□□□ -0.45
LEMD3-202ENST00000539442 GTF2A2P52657 109 aa12.22□□□□□ -0.45
LEMD3-202ENST00000539442 OAZ1P54368 228 aa12.22□□□□□ -0.45
LEMD3-202ENST00000539442 HUNKP57058 714 aa12.22□□□□□ -0.45
LEMD3-202ENST00000539442 KRT85P78386 507 aa12.22□□□□□ -0.45
LEMD3-202ENST00000539442 FSTL1Q12841 308 aa12.22□□□□□ -0.45
LEMD3-202ENST00000539442 MYSM1Q5VVJ2 828 aa12.22□□□□□ -0.45
LEMD3-202ENST00000539442 SPRYD7Q5W111 196 aa12.22□□□□□ -0.45
LEMD3-202ENST00000539442 GADL1Q6ZQY3 521 aa12.22□□□□□ -0.45
LEMD3-202ENST00000539442 ZNF396Q96N95 335 aaPredicted RBP12.22□□□□□ -0.45
LEMD3-202ENST00000539442 HOXC10Q9NYD6 342 aa12.22□□□□□ -0.45
LEMD3-202ENST00000539442 ADAMTS5Q9UNA0 930 aa12.22□□□□□ -0.45
LEMD3-202ENST00000539442 CTDP1Q9Y5B0 961 aaPredicted RBP12.22□□□□□ -0.45
LEMD3-202ENST00000539442 ABCB11O95342 1321 aa12.21□□□□□ -0.45
LEMD3-202ENST00000539442 GOLGA6L22H0YM25 854 aa12.21□□□□□ -0.45
LEMD3-202ENST00000539442 VWA5AO00534 786 aa12.21□□□□□ -0.45
LEMD3-202ENST00000539442 YY1P25490 414 aa12.21□□□□□ -0.45
LEMD3-202ENST00000539442 MRPL12P52815 198 aaKnown RBP12.21□□□□□ -0.45
LEMD3-202ENST00000539442 NR5A1Q13285 461 aa12.21□□□□□ -0.45
LEMD3-202ENST00000539442 MOGSQ13724 837 aa12.21□□□□□ -0.45
LEMD3-202ENST00000539442 RILPL1Q5EBL4 403 aa12.21□□□□□ -0.45
LEMD3-202ENST00000539442 TREML2Q5T2D2 321 aa12.21□□□□□ -0.45
LEMD3-202ENST00000539442 MCTP2Q6DN12 878 aa12.21□□□□□ -0.45
LEMD3-202ENST00000539442 SAPCD2Q86UD0 394 aa12.21□□□□□ -0.45
LEMD3-202ENST00000539442 MB21D1Q8N884 522 aa12.21□□□□□ -0.45
LEMD3-202ENST00000539442 OXER1Q8TDS5 423 aa12.21□□□□□ -0.45
LEMD3-202ENST00000539442 CUL5Q93034 780 aa12.21□□□□□ -0.45
LEMD3-202ENST00000539442 TNFRSF25Q93038 417 aa12.21□□□□□ -0.45
LEMD3-202ENST00000539442 ATG4CQ96DT6 458 aa12.21□□□□□ -0.45
LEMD3-202ENST00000539442 RIC8AQ9NPQ8 531 aa12.21□□□□□ -0.45
LEMD3-202ENST00000539442 CFAP45Q9UL16 551 aa12.21□□□□□ -0.45
LEMD3-202ENST00000539442 SLC45A1Q9Y2W3 748 aa12.21□□□□□ -0.45
LEMD3-202ENST00000539442 MRPL11Q9Y3B7 192 aaKnown RBP12.21□□□□□ -0.45
LEMD3-202ENST00000539442 TLL2Q9Y6L7 1015 aa12.21□□□□□ -0.45
LEMD3-202ENST00000539442 ZNF536O15090 1300 aa12.2□□□□□ -0.46
LEMD3-202ENST00000539442 SPDYE16A6NNV3 312 aaPredicted RBP12.2□□□□□ -0.46
LEMD3-202ENST00000539442 DDX11L8A8MPP1 907 aa12.2□□□□□ -0.46
LEMD3-202ENST00000539442 ATP2A1O14983 1001 aa12.2□□□□□ -0.46
LEMD3-202ENST00000539442 PTMSP20962 102 aa12.2□□□□□ -0.46
LEMD3-202ENST00000539442 SNAP25P60880 206 aa12.2□□□□□ -0.46
LEMD3-202ENST00000539442 IRX3P78415 501 aaPredicted RBP12.2□□□□□ -0.46
LEMD3-202ENST00000539442 DNM1Q05193 864 aaKnown RBP12.2□□□□□ -0.46
LEMD3-202ENST00000539442 CSPP1Q1MSJ5 1256 aa12.2□□□□□ -0.46
LEMD3-202ENST00000539442 USH1GQ495M9 461 aa12.2□□□□□ -0.46
LEMD3-202ENST00000539442 RGMBQ6NW40 437 aa12.2□□□□□ -0.46
LEMD3-202ENST00000539442 CCDC174Q6PII3 467 aa12.2□□□□□ -0.46
LEMD3-202ENST00000539442 LBX2Q6XYB7 198 aa12.2□□□□□ -0.46
LEMD3-202ENST00000539442 KRT25Q7Z3Z0 450 aa12.2□□□□□ -0.46
LEMD3-202ENST00000539442 REXO1Q8N1G1 1221 aaKnown RBP12.2□□□□□ -0.46
LEMD3-202ENST00000539442 REPS2Q8NFH8 660 aa12.2□□□□□ -0.46
LEMD3-202ENST00000539442 GTF3C2Q8WUA4 911 aaPredicted RBP12.2□□□□□ -0.46
LEMD3-202ENST00000539442 HHIPL1Q96JK4 782 aa12.2□□□□□ -0.46
LEMD3-202ENST00000539442 MS4A4AQ96JQ5 239 aa12.2□□□□□ -0.46
LEMD3-202ENST00000539442 PSTPIP2Q9H939 334 aa12.2□□□□□ -0.46
LEMD3-202ENST00000539442 PNMA3Q9UL41 463 aa12.2□□□□□ -0.46
LEMD3-202ENST00000539442 NOL7Q9UMY1 257 aaKnown RBP12.2□□□□□ -0.46
LEMD3-202ENST00000539442 CCDC194A0A1B0GVG4 234 aa12.19□□□□□ -0.46
LEMD3-202ENST00000539442 TMEM88BA6NKF7 163 aa12.19□□□□□ -0.46
LEMD3-202ENST00000539442 NCLP19338 710 aaKnown RBP12.19□□□□□ -0.46
LEMD3-202ENST00000539442 OSBPP22059 807 aa12.19□□□□□ -0.46
LEMD3-202ENST00000539442 MCM4P33991 863 aa12.19□□□□□ -0.46
LEMD3-202ENST00000539442 TRAPPC10P48553 1259 aa12.19□□□□□ -0.46
LEMD3-202ENST00000539442 CLK2P49760 499 aaKnown RBP12.19□□□□□ -0.46
LEMD3-202ENST00000539442 AP3B2Q13367 1082 aa12.19□□□□□ -0.46
LEMD3-202ENST00000539442 GPAT2Q6NUI2 795 aa12.19□□□□□ -0.46
LEMD3-202ENST00000539442 FAM173BQ6P4H8 233 aa12.19□□□□□ -0.46
LEMD3-202ENST00000539442 ANKRD23Q86SG2 305 aa12.19□□□□□ -0.46
LEMD3-202ENST00000539442 RASAL3Q86YV0 1011 aa12.19□□□□□ -0.46
LEMD3-202ENST00000539442 SAMD3Q8N6K7 520 aa12.19□□□□□ -0.46
LEMD3-202ENST00000539442 TMEM87AQ8NBN3 555 aa12.19□□□□□ -0.46
LEMD3-202ENST00000539442 ZNF784Q8NCA9 323 aaPredicted RBP12.19□□□□□ -0.46
LEMD3-202ENST00000539442 SCAND2PQ9GZW5 306 aaPredicted RBP12.19□□□□□ -0.46
LEMD3-202ENST00000539442 MAF1Q9H063 256 aa12.19□□□□□ -0.46
LEMD3-202ENST00000539442 CCPG1Q9ULG6 757 aa12.19□□□□□ -0.46
LEMD3-202ENST00000539442 PCDHA6Q9UN73 950 aa12.19□□□□□ -0.46
LEMD3-202ENST00000539442 PCDHB13Q9Y5F0 798 aa12.19□□□□□ -0.46
LEMD3-202ENST00000539442 PCDHA8Q9Y5H6 950 aa12.19□□□□□ -0.46
LEMD3-202ENST00000539442 PARP14Q460N5 1801 aa12.18□□□□□ -0.46
LEMD3-202ENST00000539442 CCL15-CCL14A0A0B4J2E2 113 aa12.18□□□□□ -0.46
LEMD3-202ENST00000539442 POTEB3A0JP26 581 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms