RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 CDCA7Q9BWT1 371 aaPredicted RBP11.65□□□□□ -0.54
CLIP1-209ENST00000537178 SPC25Q9HBM1 224 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 SERTAD1Q9UHV2 236 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 STAM2O75886 525 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 ASPHQ12797 758 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 AOC3Q16853 763 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 MYSM1Q5VVJ2 828 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 BCAS4Q8TDM0 211 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 MYL10Q9BUA6 226 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 THEGQ9P2T0 379 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 KCNJ14Q9UNX9 436 aa11.65□□□□□ -0.54
CLIP1-209ENST00000537178 RNF8O76064 485 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 TNNC2P02585 160 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 GCP02774 474 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 ATF7P17544 494 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-209ENST00000537178 TFAP4Q01664 338 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 C17orf53Q8N3J3 647 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-209ENST00000537178 SUPT20HQ8NEM7 779 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 IL17RAQ96F46 866 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 FAM227BQ96M60 508 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 RUNDC3BQ96NL0 473 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 CAPS2Q9BXY5 557 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 BLZF1Q9H2G9 400 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 KIAA1468Q9P260 1216 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 PPP1R9AQ9ULJ8 1098 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 KCNJ18B7U540 433 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 VPS41P49754 854 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 KCNJ12Q14500 433 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 GPBP1Q86WP2 473 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 TRIML1Q8N9V2 468 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 ADPGKQ9BRR6 497 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 PPME1Q9Y570 386 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 LRRC37A3O60309 1634 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 CYP2J2P51589 502 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 ETF1P62495 437 aaKnown RBP11.64□□□□□ -0.55
CLIP1-209ENST00000537178 TRIM68Q6AZZ1 485 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 DPP8Q6V1X1 898 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-209ENST00000537178 LRRC8CQ8TDW0 803 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 IPO11Q9UI26 975 aaKnown RBP11.64□□□□□ -0.55
CLIP1-209ENST00000537178 YTHDC2Q9H6S0 1430 aaKnown RBP11.64□□□□□ -0.55
CLIP1-209ENST00000537178 DLC1Q96QB1 1528 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 H7C1D1 291 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 LMNB1P20700 586 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 ADKP55263 362 aaKnown RBP11.64□□□□□ -0.55
CLIP1-209ENST00000537178 BFSP1Q12934 665 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 LARGE2Q8N3Y3 721 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 TCHHQ07283 1943 aa11.64□□□□□ -0.55
CLIP1-209ENST00000537178 SMCO2A6NFE2 343 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 EFCAB8A8MWE9 144 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 NR1I2O75469 434 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 PHEXP78562 749 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 RNASELQ05823 741 aaKnown RBP11.63□□□□□ -0.55
CLIP1-209ENST00000537178 ZBTB17Q13105 803 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 MMEL1Q495T6 779 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 SPOUT1Q5T280 376 aaKnown RBP11.63□□□□□ -0.55
CLIP1-209ENST00000537178 ZNF790Q6PG37 636 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 FNBP4Q8N3X1 1017 aaPredicted RBP11.63□□□□□ -0.55
CLIP1-209ENST00000537178 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.63□□□□□ -0.55
CLIP1-209ENST00000537178 DSCC1Q9BVC3 393 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 XAB2Q9HCS7 855 aaKnown RBP11.63□□□□□ -0.55
CLIP1-209ENST00000537178 VPS54Q9P1Q0 977 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 ZDHHC9Q9Y397 364 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 TOPAZ1Q8N9V7 1692 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 ALKQ9UM73 1620 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 PASKQ96RG2 1323 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 ATF2P15336 505 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 LIG4P49917 911 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 CDC37L1Q7L3B6 337 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 MAP7D3Q8IWC1 876 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 HDAC11Q96DB2 347 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 LRGUKQ96M69 825 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 CSRNP1Q96S65 589 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 SLC5A4Q9NY91 659 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 PEAK1Q9H792 1746 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 GSPT1P15170 499 aaKnown RBP11.63□□□□□ -0.55
CLIP1-209ENST00000537178 PDE6CP51160 858 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 PDCD2Q16342 344 aaPredicted RBP11.63□□□□□ -0.55
CLIP1-209ENST00000537178 KAT6BQ8WYB5 2073 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 SUN1O94901 812 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 MX2P20592 715 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 LMNB2Q03252 620 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 CTDSPL2Q05D32 466 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 ZNF526Q8TF50 670 aaPredicted RBP11.63□□□□□ -0.55
CLIP1-209ENST00000537178 IP6K1Q92551 441 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 TRIM56Q9BRZ2 755 aaKnown RBP11.63□□□□□ -0.55
CLIP1-209ENST00000537178 MED10Q9BTT4 135 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 DPH5Q9H2P9 285 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 ZNF148Q9UQR1 794 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 MARF1Q9Y4F3 1742 aaKnown RBP11.63□□□□□ -0.55
CLIP1-209ENST00000537178 SERPINB6P35237 376 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 SPATA5Q8NB90 893 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 PSPC1Q8WXF1 523 aaKnown RBP11.63□□□□□ -0.55
CLIP1-209ENST00000537178 ANO3Q9BYT9 981 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 ARPP21Q9UBL0 812 aaPredicted RBP11.63□□□□□ -0.55
CLIP1-209ENST00000537178 PNMA2Q9UL42 364 aa11.63□□□□□ -0.55
CLIP1-209ENST00000537178 MROH5Q6ZUA9 1318 aa11.62□□□□□ -0.55
CLIP1-209ENST00000537178 MORC3Q14149 939 aa11.62□□□□□ -0.55
CLIP1-209ENST00000537178 MAPKAPK5Q8IW41 473 aa11.62□□□□□ -0.55
CLIP1-209ENST00000537178 SPDL1Q96EA4 605 aa11.62□□□□□ -0.55
CLIP1-209ENST00000537178 PHACTR3Q96KR7 559 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms