RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	ARVCF	O00192	962 aa		13.72	□□□□□ -0.21
CTNND1-238	ENST00000534647	CTAGE5	O15320	804 aa		13.72	□□□□□ -0.21
CTNND1-238	ENST00000534647	ADCY6	O43306	1168 aa		13.72	□□□□□ -0.21
CTNND1-238	ENST00000534647	PRDM1	O75626	825 aa		13.72	□□□□□ -0.21
CTNND1-238	ENST00000534647	APP	P05067	770 aa		13.72	□□□□□ -0.21
CTNND1-238	ENST00000534647	C6orf222	P0C671	652 aa	Predicted RBP	13.72	□□□□□ -0.21
CTNND1-238	ENST00000534647	PSEN1	P49768	467 aa		13.72	□□□□□ -0.21
CTNND1-238	ENST00000534647	PDE4B	Q07343	736 aa		13.72	□□□□□ -0.21
CTNND1-238	ENST00000534647	PPIG	Q13427	754 aa	Known RBP eCLIP	13.72	□□□□□ -0.21	1e-7	■□□□□ 8.5
CTNND1-238	ENST00000534647	TKFC	Q3LXA3	575 aa		13.72	□□□□□ -0.21
CTNND1-238	ENST00000534647	GNAS	Q5JWF2	1037 aa		13.72	□□□□□ -0.21
CTNND1-238	ENST00000534647	SLFN13	Q68D06	897 aa		13.72	□□□□□ -0.21
CTNND1-238	ENST00000534647	CCDC174	Q6PII3	467 aa		13.72	□□□□□ -0.21
CTNND1-238	ENST00000534647	C16orf59	Q7L2K0	433 aa		13.72	□□□□□ -0.21
CTNND1-238	ENST00000534647	FAM160B2	Q86V87	743 aa		13.72	□□□□□ -0.21
CTNND1-238	ENST00000534647	STK11IP	Q8N1F8	1099 aa		13.72	□□□□□ -0.21
CTNND1-238	ENST00000534647	FAM133A	Q8N9E0	248 aa		13.72	□□□□□ -0.21
CTNND1-238	ENST00000534647	CHURC1	Q8WUH1	139 aa		13.72	□□□□□ -0.21
CTNND1-238	ENST00000534647	SEZ6L	Q9BYH1	1024 aa		13.72	□□□□□ -0.21
CTNND1-238	ENST00000534647	UNC80	Q8N2C7	3258 aa		13.72	□□□□□ -0.21
CTNND1-238	ENST00000534647	ASB14	A6NK59	587 aa		13.71	□□□□□ -0.21
CTNND1-238	ENST00000534647		M0R2C6	588 aa		13.71	□□□□□ -0.21
CTNND1-238	ENST00000534647	SLC3A2	P08195	630 aa	Known RBP	13.71	□□□□□ -0.21
CTNND1-238	ENST00000534647	TSPY3	P0CV98	308 aa		13.71	□□□□□ -0.21
CTNND1-238	ENST00000534647	TSPY8	P0CW00	308 aa		13.71	□□□□□ -0.21
CTNND1-238	ENST00000534647	FOSL2	P15408	326 aa		13.71	□□□□□ -0.21
CTNND1-238	ENST00000534647	DNAJB2	P25686	324 aa		13.71	□□□□□ -0.21
CTNND1-238	ENST00000534647	FAM126B	Q8IXS8	530 aa		13.71	□□□□□ -0.21
CTNND1-238	ENST00000534647	CCDC144CP	Q8IYA2	1237 aa		13.71	□□□□□ -0.21
CTNND1-238	ENST00000534647	SLC43A3	Q8NBI5	491 aa		13.71	□□□□□ -0.21
CTNND1-238	ENST00000534647	STAG1	Q8WVM7	1258 aa		13.71	□□□□□ -0.21
CTNND1-238	ENST00000534647	DDX27	Q96GQ7	796 aa	Known RBP	13.71	□□□□□ -0.21
CTNND1-238	ENST00000534647	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	13.71	□□□□□ -0.21	2e-10	■□□□□ 10
CTNND1-238	ENST00000534647	ACAD9	Q9H845	621 aa		13.71	□□□□□ -0.21
CTNND1-238	ENST00000534647	ZNF536	O15090	1300 aa		13.7	□□□□□ -0.22
CTNND1-238	ENST00000534647	TMEM232	C9JQI7	657 aa		13.7	□□□□□ -0.22
CTNND1-238	ENST00000534647	ERC2	O15083	957 aa		13.7	□□□□□ -0.22
CTNND1-238	ENST00000534647	CABYR	O75952	493 aa		13.7	□□□□□ -0.22
CTNND1-238	ENST00000534647	CD4	P01730	458 aa		13.7	□□□□□ -0.22
CTNND1-238	ENST00000534647	SLC4A3	P48751	1232 aa		13.7	□□□□□ -0.22
CTNND1-238	ENST00000534647	STAT2	P52630	851 aa		13.7	□□□□□ -0.22
CTNND1-238	ENST00000534647	IRX6	P78412	446 aa	Predicted RBP	13.7	□□□□□ -0.22
CTNND1-238	ENST00000534647	TFAP4	Q01664	338 aa		13.7	□□□□□ -0.22
CTNND1-238	ENST00000534647	GRIN2C	Q14957	1233 aa		13.7	□□□□□ -0.22
CTNND1-238	ENST00000534647	TMEM240	Q5SV17	173 aa		13.7	□□□□□ -0.22
CTNND1-238	ENST00000534647	ZMYM1	Q5SVZ6	1142 aa		13.7	□□□□□ -0.22
CTNND1-238	ENST00000534647	CCDC129	Q6ZRS4	1044 aa		13.7	□□□□□ -0.22
CTNND1-238	ENST00000534647	LRRC47	Q8N1G4	583 aa	Known RBP	13.7	□□□□□ -0.22
CTNND1-238	ENST00000534647	TMEM199	Q8N511	208 aa		13.7	□□□□□ -0.22
CTNND1-238	ENST00000534647	SYMPK	Q92797	1274 aa	Known RBP	13.7	□□□□□ -0.22
CTNND1-238	ENST00000534647	PCDHB8	Q9UN66	801 aa		13.7	□□□□□ -0.22
CTNND1-238	ENST00000534647	GNE	Q9Y223	722 aa	Known RBP	13.7	□□□□□ -0.22
CTNND1-238	ENST00000534647		Q9Y3F1	56 aa		13.7	□□□□□ -0.22
CTNND1-238	ENST00000534647	PCDHB13	Q9Y5F0	798 aa		13.7	□□□□□ -0.22
CTNND1-238	ENST00000534647	TLR3	O15455	904 aa	Known RBP	13.69	□□□□□ -0.22
CTNND1-238	ENST00000534647	NOV	P48745	357 aa		13.69	□□□□□ -0.22
CTNND1-238	ENST00000534647	IRX5	P78411	483 aa	Predicted RBP	13.69	□□□□□ -0.22
CTNND1-238	ENST00000534647	CNTN2	Q02246	1040 aa		13.69	□□□□□ -0.22
CTNND1-238	ENST00000534647	TNFAIP2	Q03169	654 aa		13.69	□□□□□ -0.22
CTNND1-238	ENST00000534647	PPARA	Q07869	468 aa		13.69	□□□□□ -0.22
CTNND1-238	ENST00000534647	TSHZ3	Q63HK5	1081 aa		13.69	□□□□□ -0.22
CTNND1-238	ENST00000534647	RCSD1	Q6JBY9	416 aa		13.69	□□□□□ -0.22
CTNND1-238	ENST00000534647	PI4K2B	Q8TCG2	481 aa		13.69	□□□□□ -0.22
CTNND1-238	ENST00000534647	VTI1A	Q96AJ9	217 aa		13.69	□□□□□ -0.22
CTNND1-238	ENST00000534647	ZNF576	Q9H609	170 aa		13.69	□□□□□ -0.22
CTNND1-238	ENST00000534647	A1CF	Q9NQ94	594 aa	Known RBP	13.69	□□□□□ -0.22
CTNND1-238	ENST00000534647	SOWAHB	A6NEL2	793 aa		13.68	□□□□□ -0.22
CTNND1-238	ENST00000534647	CSF2RA	P15509	400 aa		13.68	□□□□□ -0.22
CTNND1-238	ENST00000534647	SLC1A4	P43007	532 aa		13.68	□□□□□ -0.22
CTNND1-238	ENST00000534647	RRP1	P56182	461 aa	Known RBP	13.68	□□□□□ -0.22
CTNND1-238	ENST00000534647	IQSEC1	Q6DN90	963 aa		13.68	□□□□□ -0.22
CTNND1-238	ENST00000534647	PSRC1	Q6PGN9	363 aa	Predicted RBP	13.68	□□□□□ -0.22
CTNND1-238	ENST00000534647	RGS22	Q8NE09	1264 aa		13.68	□□□□□ -0.22
CTNND1-238	ENST00000534647	MORC4	Q8TE76	937 aa		13.68	□□□□□ -0.22
CTNND1-238	ENST00000534647	TIFA	Q96CG3	184 aa		13.68	□□□□□ -0.22
CTNND1-238	ENST00000534647	AGBL1	Q96MI9	1066 aa		13.68	□□□□□ -0.22
CTNND1-238	ENST00000534647	SEC62	Q99442	399 aa	Known RBP	13.68	□□□□□ -0.22
CTNND1-238	ENST00000534647	NAPB	Q9H115	298 aa		13.68	□□□□□ -0.22
CTNND1-238	ENST00000534647	RNF146	Q9NTX7	359 aa		13.68	□□□□□ -0.22
CTNND1-238	ENST00000534647	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	13.68	□□□□□ -0.22	3e-9	■□□□□ 10.4
CTNND1-238	ENST00000534647	ASTN1	O14525	1302 aa		13.67	□□□□□ -0.22
CTNND1-238	ENST00000534647	FGR	P09769	529 aa		13.67	□□□□□ -0.22
CTNND1-238	ENST00000534647	MCC	P23508	829 aa		13.67	□□□□□ -0.22
CTNND1-238	ENST00000534647	ZNF365	Q70YC5	407 aa		13.67	□□□□□ -0.22
CTNND1-238	ENST00000534647	HERVK_113	Q902F9	699 aa		13.67	□□□□□ -0.22
CTNND1-238	ENST00000534647	TRERF1	Q96PN7	1200 aa		13.67	□□□□□ -0.22
CTNND1-238	ENST00000534647	IL23A	Q9NPF7	189 aa		13.67	□□□□□ -0.22
CTNND1-238	ENST00000534647	IL17RB	Q9NRM6	502 aa		13.67	□□□□□ -0.22
CTNND1-238	ENST00000534647	HOMER2	Q9NSB8	354 aa		13.67	□□□□□ -0.22
CTNND1-238	ENST00000534647	ANAPC4	Q9UJX5	808 aa		13.67	□□□□□ -0.22
CTNND1-238	ENST00000534647	LOC102724159	A0A0B4J2E5	919 aa		13.66	□□□□□ -0.22
CTNND1-238	ENST00000534647	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	13.66	□□□□□ -0.22
CTNND1-238	ENST00000534647	FOXP2	O15409	715 aa		13.66	□□□□□ -0.22
CTNND1-238	ENST00000534647	ZEB2	O60315	1214 aa		13.66	□□□□□ -0.22
CTNND1-238	ENST00000534647	PWP2	Q15269	919 aa	Known RBP	13.66	□□□□□ -0.22
CTNND1-238	ENST00000534647	FSCN1	Q16658	493 aa	Known RBP	13.66	□□□□□ -0.22
CTNND1-238	ENST00000534647	AKNAD1	Q5T1N1	836 aa		13.66	□□□□□ -0.22
CTNND1-238	ENST00000534647	TAPT1	Q6NXT6	567 aa		13.66	□□□□□ -0.22
CTNND1-238	ENST00000534647	TICAM2	Q86XR7	235 aa		13.66	□□□□□ -0.22
CTNND1-238	ENST00000534647	FSD1	Q9BTV5	496 aa		13.66	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 462.7 ms