RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 CSF2RAP15509 400 aa18.65■□□□□ 0.58
CHMP4A-207ENST00000533523 BEX3Q00994 111 aa18.65■□□□□ 0.58
CHMP4A-207ENST00000533523 RASIP1Q5U651 963 aa18.65■□□□□ 0.58
CHMP4A-207ENST00000533523 IFNL3Q8IZI9 196 aa18.65■□□□□ 0.58
CHMP4A-207ENST00000533523 TMEM199Q8N511 208 aa18.65■□□□□ 0.58
CHMP4A-207ENST00000533523 NEDD1Q8NHV4 660 aa18.65■□□□□ 0.58
CHMP4A-207ENST00000533523 FSD1Q9BTV5 496 aa18.65■□□□□ 0.58
CHMP4A-207ENST00000533523 PBX4Q9BYU1 374 aa18.65■□□□□ 0.58
CHMP4A-207ENST00000533523 PRDM12Q9H4Q4 367 aa18.65■□□□□ 0.58
CHMP4A-207ENST00000533523 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.64■□□□□ 0.57
CHMP4A-207ENST00000533523 PATL2C9JE40 543 aaKnown RBP18.64■□□□□ 0.57
CHMP4A-207ENST00000533523 SLC1A4P43007 532 aa18.64■□□□□ 0.57
CHMP4A-207ENST00000533523 CDK7P50613 346 aa18.64■□□□□ 0.57
CHMP4A-207ENST00000533523 PPARAQ07869 468 aa18.64■□□□□ 0.57
CHMP4A-207ENST00000533523 TMEM240Q5SV17 173 aa18.64■□□□□ 0.57
CHMP4A-207ENST00000533523 ANKRD45Q5TZF3 282 aa18.64■□□□□ 0.57
CHMP4A-207ENST00000533523 TLK2Q86UE8 772 aa18.64■□□□□ 0.57
CHMP4A-207ENST00000533523 FAM126BQ8IXS8 530 aa18.64■□□□□ 0.57
CHMP4A-207ENST00000533523 PPM1EQ8WY54 764 aa18.64■□□□□ 0.57
CHMP4A-207ENST00000533523 AGBL1Q96MI9 1066 aa18.64■□□□□ 0.57
CHMP4A-207ENST00000533523 ASB2Q96Q27 587 aa18.64■□□□□ 0.57
CHMP4A-207ENST00000533523 SEC62Q99442 399 aaKnown RBP18.64■□□□□ 0.57
CHMP4A-207ENST00000533523 KATNBL1Q9H079 304 aa18.64■□□□□ 0.57
CHMP4A-207ENST00000533523 A1CFQ9NQ94 594 aaKnown RBP18.64■□□□□ 0.57
CHMP4A-207ENST00000533523 PIEZO1Q92508 2521 aa18.63■□□□□ 0.57
CHMP4A-207ENST00000533523 FDX1P10109 184 aa18.63■□□□□ 0.57
CHMP4A-207ENST00000533523 ACRP10323 421 aa18.63■□□□□ 0.57
CHMP4A-207ENST00000533523 ALAS1P13196 640 aa18.63■□□□□ 0.57
CHMP4A-207ENST00000533523 MX1P20591 662 aa18.63■□□□□ 0.57
CHMP4A-207ENST00000533523 HOXD11P31277 338 aaPredicted RBP18.63■□□□□ 0.57
CHMP4A-207ENST00000533523 TFAP4Q01664 338 aa18.63■□□□□ 0.57
CHMP4A-207ENST00000533523 TNFAIP2Q03169 654 aa18.63■□□□□ 0.57
CHMP4A-207ENST00000533523 PSRC1Q6PGN9 363 aaPredicted RBP18.63■□□□□ 0.57
CHMP4A-207ENST00000533523 CENPQQ7L2Z9 268 aaPredicted RBP18.63■□□□□ 0.57
CHMP4A-207ENST00000533523 FAM160B2Q86V87 743 aa18.63■□□□□ 0.57
CHMP4A-207ENST00000533523 CHURC1Q8WUH1 139 aa18.63■□□□□ 0.57
CHMP4A-207ENST00000533523 GMCL1Q96IK5 515 aa18.63■□□□□ 0.57
CHMP4A-207ENST00000533523 MTMR7Q9Y216 660 aa18.63■□□□□ 0.57
CHMP4A-207ENST00000533523 CTAGE5O15320 804 aa18.62■□□□□ 0.57
CHMP4A-207ENST00000533523 MCCP23508 829 aa18.62■□□□□ 0.57
CHMP4A-207ENST00000533523 CYP2C18P33260 490 aa18.62■□□□□ 0.57
CHMP4A-207ENST00000533523 SNAP25P60880 206 aa18.62■□□□□ 0.57
CHMP4A-207ENST00000533523 CXCL17Q6UXB2 119 aa18.62■□□□□ 0.57
CHMP4A-207ENST00000533523 KCTD1Q719H9 257 aa18.62■□□□□ 0.57
CHMP4A-207ENST00000533523 RASGRP2Q7LDG7 609 aa18.62■□□□□ 0.57
CHMP4A-207ENST00000533523 FAM133AQ8N9E0 248 aa18.62■□□□□ 0.57
CHMP4A-207ENST00000533523 GAS2L1Q99501 681 aaPredicted RBP18.62■□□□□ 0.57
CHMP4A-207ENST00000533523 STX8Q9UNK0 236 aa18.62■□□□□ 0.57
CHMP4A-207ENST00000533523 DDX49Q9Y6V7 483 aaKnown RBP18.62■□□□□ 0.57
CHMP4A-207ENST00000533523 ASTN1O14525 1302 aa18.62■□□□□ 0.57
CHMP4A-207ENST00000533523 SCN5AQ14524 2016 aa18.62■□□□□ 0.57
CHMP4A-207ENST00000533523 ZNF536O15090 1300 aa18.61■□□□□ 0.57
CHMP4A-207ENST00000533523 SOWAHBA6NEL2 793 aa18.61■□□□□ 0.57
CHMP4A-207ENST00000533523 ASB14A6NK59 587 aa18.61■□□□□ 0.57
CHMP4A-207ENST00000533523 PTGS1P23219 599 aa18.61■□□□□ 0.57
CHMP4A-207ENST00000533523 TKFCQ3LXA3 575 aa18.61■□□□□ 0.57
CHMP4A-207ENST00000533523 ZNF365Q70YC5 407 aa18.61■□□□□ 0.57
CHMP4A-207ENST00000533523 FBXO16Q8IX29 292 aaPredicted RBP18.61■□□□□ 0.57
CHMP4A-207ENST00000533523 STAG1Q8WVM7 1258 aa18.61■□□□□ 0.57
CHMP4A-207ENST00000533523 TRERF1Q96PN7 1200 aa18.61■□□□□ 0.57
CHMP4A-207ENST00000533523 PRRC2BQ5JSZ5 2229 aaKnown RBP18.6■□□□□ 0.57
CHMP4A-207ENST00000533523 TSPY2A6NKD2 308 aa18.6■□□□□ 0.57
CHMP4A-207ENST00000533523 FSCN1Q16658 493 aaKnown RBP18.6■□□□□ 0.57
CHMP4A-207ENST00000533523 CCDC96Q2M329 555 aa18.6■□□□□ 0.57
CHMP4A-207ENST00000533523 PPP4R3BQ5MIZ7 849 aa18.6■□□□□ 0.57
CHMP4A-207ENST00000533523 PI4K2BQ8TCG2 481 aa18.6■□□□□ 0.57
CHMP4A-207ENST00000533523 ATXN2LQ8WWM7 1075 aaKnown RBP18.6■□□□□ 0.57
CHMP4A-207ENST00000533523 UHRF1Q96T88 793 aaPredicted RBP18.6■□□□□ 0.57
CHMP4A-207ENST00000533523 AP5M1Q9H0R1 490 aa18.6■□□□□ 0.57
CHMP4A-207ENST00000533523 HIPK3Q9H422 1215 aa18.6■□□□□ 0.57
CHMP4A-207ENST00000533523 THEGQ9P2T0 379 aa18.6■□□□□ 0.57
CHMP4A-207ENST00000533523 TRIOO75962 3097 aa18.6■□□□□ 0.57
CHMP4A-207ENST00000533523 TANC1Q9C0D5 1861 aa18.59■□□□□ 0.57
CHMP4A-207ENST00000533523 NMT2O60551 498 aa18.59■□□□□ 0.57
CHMP4A-207ENST00000533523 CTDSPL2Q05D32 466 aa18.59■□□□□ 0.57
CHMP4A-207ENST00000533523 CCDC85BQ15834 202 aaPredicted RBP18.59■□□□□ 0.57
CHMP4A-207ENST00000533523 MUM1L1Q5H9M0 696 aa18.59■□□□□ 0.57
CHMP4A-207ENST00000533523 ZMYM1Q5SVZ6 1142 aa18.59■□□□□ 0.57
CHMP4A-207ENST00000533523 AKNAD1Q5T1N1 836 aa18.59■□□□□ 0.57
CHMP4A-207ENST00000533523 NSMFQ6X4W1 530 aa18.59■□□□□ 0.57
CHMP4A-207ENST00000533523 EEPD1Q7L9B9 569 aa18.59■□□□□ 0.57
CHMP4A-207ENST00000533523 SMC5Q8IY18 1101 aa18.59■□□□□ 0.57
CHMP4A-207ENST00000533523 OTUD7AQ8TE49 926 aaPredicted RBP18.59■□□□□ 0.57
CHMP4A-207ENST00000533523 VWCEQ96DN2 955 aa18.59■□□□□ 0.57
CHMP4A-207ENST00000533523 MTIF3Q9H2K0 278 aaKnown RBP18.59■□□□□ 0.57
CHMP4A-207ENST00000533523 IL23AQ9NPF7 189 aa18.59■□□□□ 0.57
CHMP4A-207ENST00000533523 CXXC1Q9P0U4 656 aaPredicted RBP18.59■□□□□ 0.57
CHMP4A-207ENST00000533523 CCPG1Q9ULG6 757 aa18.59■□□□□ 0.57
CHMP4A-207ENST00000533523 GNEQ9Y223 722 aaKnown RBP18.59■□□□□ 0.57
CHMP4A-207ENST00000533523 YBX2Q9Y2T7 364 aaKnown RBP18.59■□□□□ 0.57
CHMP4A-207ENST00000533523 MUC6Q6W4X9 2439 aa18.59■□□□□ 0.57
CHMP4A-207ENST00000533523 UMODL1Q5DID0 1318 aa18.58■□□□□ 0.57
CHMP4A-207ENST00000533523 SALL3Q9BXA9 1300 aa18.58■□□□□ 0.57
CHMP4A-207ENST00000533523 DYNC1LI2O43237 492 aaPredicted RBP18.58■□□□□ 0.56
CHMP4A-207ENST00000533523 ZEB2O60315 1214 aa18.58■□□□□ 0.56
CHMP4A-207ENST00000533523 CABYRO75952 493 aa18.58■□□□□ 0.56
CHMP4A-207ENST00000533523 CD4P01730 458 aa18.58■□□□□ 0.56
CHMP4A-207ENST00000533523 SMPD1P17405 629 aa18.58■□□□□ 0.56
CHMP4A-207ENST00000533523 ITGA7Q13683 1181 aa18.58■□□□□ 0.56
CHMP4A-207ENST00000533523 CYP39A1Q9NYL5 469 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms