RNA–Protein interactions for RNA: ENST00000533309.5

TRIM3-213, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 1,647 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-213ENST00000533309 LINC00301Q8NCQ3 95 aa18.27■□□□□ 0.52
TRIM3-213ENST00000533309 REPS2Q8NFH8 660 aa18.27■□□□□ 0.52
TRIM3-213ENST00000533309 PSTPIP2Q9H939 334 aa18.27■□□□□ 0.52
TRIM3-213ENST00000533309 TMEM260Q9NX78 707 aa18.27■□□□□ 0.52
TRIM3-213ENST00000533309 MYPNQ86TC9 1320 aa18.27■□□□□ 0.52
TRIM3-213ENST00000533309 YEATS4O95619 227 aa18.27■□□□□ 0.51
TRIM3-213ENST00000533309 COG2Q14746 738 aa18.27■□□□□ 0.51
TRIM3-213ENST00000533309 PTPAQ15257 358 aa18.27■□□□□ 0.51
TRIM3-213ENST00000533309 SF3A1Q15459 793 aaKnown RBP18.27■□□□□ 0.51
TRIM3-213ENST00000533309 UBE2SQ16763 222 aa18.27■□□□□ 0.51
TRIM3-213ENST00000533309 GADL1Q6ZQY3 521 aa18.27■□□□□ 0.51
TRIM3-213ENST00000533309 AGBL1Q96MI9 1066 aa18.27■□□□□ 0.51
TRIM3-213ENST00000533309 BIN2Q9UBW5 565 aaPredicted RBP18.27■□□□□ 0.51
TRIM3-213ENST00000533309 PCDHB6Q9Y5E3 794 aa18.27■□□□□ 0.51
TRIM3-213ENST00000533309 CCDC194A0A1B0GVG4 234 aa18.26■□□□□ 0.51
TRIM3-213ENST00000533309 SPDYE16A6NNV3 312 aaPredicted RBP18.26■□□□□ 0.51
TRIM3-213ENST00000533309 MEIS2O14770 477 aa18.26■□□□□ 0.51
TRIM3-213ENST00000533309 FDX1P10109 184 aa18.26■□□□□ 0.51
TRIM3-213ENST00000533309 PTMSP20962 102 aa18.26■□□□□ 0.51
TRIM3-213ENST00000533309 HOXA7P31268 230 aaPredicted RBP18.26■□□□□ 0.51
TRIM3-213ENST00000533309 MRPL12P52815 198 aaKnown RBP18.26■□□□□ 0.51
TRIM3-213ENST00000533309 TRAF1Q13077 416 aa18.26■□□□□ 0.51
TRIM3-213ENST00000533309 CSPP1Q1MSJ5 1256 aa18.26■□□□□ 0.51
TRIM3-213ENST00000533309 JAKMIP3Q5VZ66 844 aa18.26■□□□□ 0.51
TRIM3-213ENST00000533309 KRT25Q7Z3Z0 450 aa18.26■□□□□ 0.51
TRIM3-213ENST00000533309 TRAPPC10P48553 1259 aa18.25■□□□□ 0.51
TRIM3-213ENST00000533309 SNAPC2Q13487 334 aa18.25■□□□□ 0.51
TRIM3-213ENST00000533309 SLC39A14Q15043 492 aa18.25■□□□□ 0.51
TRIM3-213ENST00000533309 USP17L6PQ6QN14 398 aa18.25■□□□□ 0.51
TRIM3-213ENST00000533309 P2RX7Q99572 595 aaKnown RBP18.25■□□□□ 0.51
TRIM3-213ENST00000533309 GLT8D2Q9H1C3 349 aa18.25■□□□□ 0.51
TRIM3-213ENST00000533309 RAVER2Q9HCJ3 691 aaKnown RBP18.25■□□□□ 0.51
TRIM3-213ENST00000533309 CCPG1Q9ULG6 757 aa18.25■□□□□ 0.51
TRIM3-213ENST00000533309 NOL7Q9UMY1 257 aaKnown RBP18.25■□□□□ 0.51
TRIM3-213ENST00000533309 AGTPBP1Q9UPW5 1226 aa18.25■□□□□ 0.51
TRIM3-213ENST00000533309 ABCB11O95342 1321 aa18.25■□□□□ 0.51
TRIM3-213ENST00000533309 ZBED4O75132 1171 aa18.24■□□□□ 0.51
TRIM3-213ENST00000533309 ATP2B1P20020 1258 aa18.24■□□□□ 0.51
TRIM3-213ENST00000533309 INF2Q27J81 1249 aa18.24■□□□□ 0.51
TRIM3-213ENST00000533309 GPAT2Q6NUI2 795 aa18.24■□□□□ 0.51
TRIM3-213ENST00000533309 POTEEQ6S8J3 1075 aa18.24■□□□□ 0.51
TRIM3-213ENST00000533309 MS4A4AQ96JQ5 239 aa18.24■□□□□ 0.51
TRIM3-213ENST00000533309 PGBD1Q96JS3 809 aa18.24■□□□□ 0.51
TRIM3-213ENST00000533309 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.24■□□□□ 0.51
TRIM3-213ENST00000533309 HUNKP57058 714 aa18.23■□□□□ 0.51
TRIM3-213ENST00000533309 STK38Q15208 465 aa18.23■□□□□ 0.51
TRIM3-213ENST00000533309 NONOQ15233 471 aaKnown RBP eCLIP18.23■□□□□ 0.51
TRIM3-213ENST00000533309 TTC38Q5R3I4 469 aa18.23■□□□□ 0.51
TRIM3-213ENST00000533309 FASTKD5Q7L8L6 764 aaKnown RBP18.23■□□□□ 0.51
TRIM3-213ENST00000533309 CPXCR1Q8N123 301 aa18.23■□□□□ 0.51
TRIM3-213ENST00000533309 GPT2Q8TD30 523 aa18.23■□□□□ 0.51
TRIM3-213ENST00000533309 ZNF214Q9UL59 606 aaPredicted RBP18.23■□□□□ 0.51
TRIM3-213ENST00000533309 MRPL11Q9Y3B7 192 aaKnown RBP18.23■□□□□ 0.51
TRIM3-213ENST00000533309 PIK3CDO00329 1044 aa18.23■□□□□ 0.51
TRIM3-213ENST00000533309 SPTLC2O15270 562 aa18.23■□□□□ 0.51
TRIM3-213ENST00000533309 TRAK2O60296 914 aa18.23■□□□□ 0.51
TRIM3-213ENST00000533309 UBE2HP62256 183 aa18.23■□□□□ 0.51
TRIM3-213ENST00000533309 SPRYD7Q5W111 196 aa18.23■□□□□ 0.51
TRIM3-213ENST00000533309 KCNG4Q8TDN1 519 aa18.23■□□□□ 0.51
TRIM3-213ENST00000533309 CLEC4DQ8WXI8 215 aa18.23■□□□□ 0.51
TRIM3-213ENST00000533309 HOXC10Q9NYD6 342 aa18.23■□□□□ 0.51
TRIM3-213ENST00000533309 ATP2A1O14983 1001 aa18.22■□□□□ 0.51
TRIM3-213ENST00000533309 EDIL3O43854 480 aa18.22■□□□□ 0.51
TRIM3-213ENST00000533309 OAZ1P54368 228 aa18.22■□□□□ 0.51
TRIM3-213ENST00000533309 TMEM132BQ14DG7 1078 aa18.22■□□□□ 0.51
TRIM3-213ENST00000533309 TEX2Q8IWB9 1127 aa18.22■□□□□ 0.51
TRIM3-213ENST00000533309 SMC1BQ8NDV3 1235 aa18.22■□□□□ 0.51
TRIM3-213ENST00000533309 TBCKQ8TEA7 893 aa18.22■□□□□ 0.51
TRIM3-213ENST00000533309 TBC1D5Q92609 795 aa18.22■□□□□ 0.51
TRIM3-213ENST00000533309 ASCC2Q9H1I8 757 aaPredicted RBP18.22■□□□□ 0.51
TRIM3-213ENST00000533309 NFIBO00712 420 aa18.21■□□□□ 0.51
TRIM3-213ENST00000533309 ZBTB48P10074 688 aaPredicted RBP18.21■□□□□ 0.51
TRIM3-213ENST00000533309 ALAS1P13196 640 aa18.21■□□□□ 0.51
TRIM3-213ENST00000533309 MKRN3Q13064 507 aaKnown RBP18.21■□□□□ 0.51
TRIM3-213ENST00000533309 AP3B2Q13367 1082 aa18.21■□□□□ 0.51
TRIM3-213ENST00000533309 LBX2Q6XYB7 198 aa18.21■□□□□ 0.51
TRIM3-213ENST00000533309 SAPCD2Q86UD0 394 aa18.21■□□□□ 0.51
TRIM3-213ENST00000533309 PCDHA7Q9UN72 937 aa18.21■□□□□ 0.51
TRIM3-213ENST00000533309 RIPK3Q9Y572 518 aa18.21■□□□□ 0.51
TRIM3-213ENST00000533309 MORC2Q9Y6X9 1032 aaPredicted RBP18.21■□□□□ 0.51
TRIM3-213ENST00000533309 PPP6R2O75170 966 aa18.2■□□□□ 0.5
TRIM3-213ENST00000533309 HOXA13P31271 388 aaPredicted RBP18.2■□□□□ 0.5
TRIM3-213ENST00000533309 ME1P48163 572 aa18.2■□□□□ 0.5
TRIM3-213ENST00000533309 GTF2A2P52657 109 aa18.2■□□□□ 0.5
TRIM3-213ENST00000533309 IRX3P78415 501 aaPredicted RBP18.2■□□□□ 0.5
TRIM3-213ENST00000533309 GHRHRQ02643 423 aa18.2■□□□□ 0.5
TRIM3-213ENST00000533309 ZNF174Q15697 407 aa18.2■□□□□ 0.5
TRIM3-213ENST00000533309 MUM1L1Q5H9M0 696 aa18.2■□□□□ 0.5
TRIM3-213ENST00000533309 NEK8Q86SG6 692 aa18.2■□□□□ 0.5
TRIM3-213ENST00000533309 BRI3BPQ8WY22 251 aa18.2■□□□□ 0.5
TRIM3-213ENST00000533309 ANO3Q9BYT9 981 aa18.2■□□□□ 0.5
TRIM3-213ENST00000533309 PNMA2Q9UL42 364 aa18.2■□□□□ 0.5
TRIM3-213ENST00000533309 CTDP1Q9Y5B0 961 aaPredicted RBP18.2■□□□□ 0.5
TRIM3-213ENST00000533309 MRVI1Q9Y6F6 885 aa18.2■□□□□ 0.5
TRIM3-213ENST00000533309 DDX49Q9Y6V7 483 aaKnown RBP18.2■□□□□ 0.5
TRIM3-213ENST00000533309 LCTP09848 1927 aa18.2■□□□□ 0.5
TRIM3-213ENST00000533309 CFBP00751 764 aa18.2■□□□□ 0.5
TRIM3-213ENST00000533309 CETPP11597 493 aa18.2■□□□□ 0.5
TRIM3-213ENST00000533309 MARCKSP29966 332 aaPredicted RBP18.2■□□□□ 0.5
TRIM3-213ENST00000533309 KLHL40Q2TBA0 621 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms