RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 RNF216Q9NWF9 866 aaPredicted RBP9.65□□□□□ -0.87
NEDD8-207ENST00000533242 CYP2D7A0A087X1C5 515 aa9.64□□□□□ -0.87
NEDD8-207ENST00000533242 GRXCR1A8MXD5 290 aa9.64□□□□□ -0.87
NEDD8-207ENST00000533242 ASGR1P07306 291 aa9.64□□□□□ -0.87
NEDD8-207ENST00000533242 CSF2RAP15509 400 aa9.64□□□□□ -0.87
NEDD8-207ENST00000533242 MCCP23508 829 aa9.64□□□□□ -0.87
NEDD8-207ENST00000533242 NKX3-2P78367 333 aa9.64□□□□□ -0.87
NEDD8-207ENST00000533242 ACVR2BQ13705 512 aa9.64□□□□□ -0.87
NEDD8-207ENST00000533242 FOXD4L6Q3SYB3 417 aaPredicted RBP9.64□□□□□ -0.87
NEDD8-207ENST00000533242 SNRNP48Q6IEG0 339 aaKnown RBP9.64□□□□□ -0.87
NEDD8-207ENST00000533242 FOXD4L3Q6VB84 417 aaPredicted RBP9.64□□□□□ -0.87
NEDD8-207ENST00000533242 ZNF365Q70YC5 407 aa9.64□□□□□ -0.87
NEDD8-207ENST00000533242 FAM126BQ8IXS8 530 aa9.64□□□□□ -0.87
NEDD8-207ENST00000533242 CLASRPQ8N2M8 674 aaKnown RBP9.64□□□□□ -0.87
NEDD8-207ENST00000533242 PPM1EQ8WY54 764 aa9.64□□□□□ -0.87
NEDD8-207ENST00000533242 MTIF3Q9H2K0 278 aaKnown RBP9.64□□□□□ -0.87
NEDD8-207ENST00000533242 IL23AQ9NPF7 189 aa9.64□□□□□ -0.87
NEDD8-207ENST00000533242 USP17L12C9JPN9 530 aa9.64□□□□□ -0.87
NEDD8-207ENST00000533242 USP17L21D6R901 530 aa9.64□□□□□ -0.87
NEDD8-207ENST00000533242 GOLGA6L22H0YM25 854 aa9.64□□□□□ -0.87
NEDD8-207ENST00000533242 ATP2A1O14983 1001 aa9.64□□□□□ -0.87
NEDD8-207ENST00000533242 BRD1O95696 1058 aa9.64□□□□□ -0.87
NEDD8-207ENST00000533242 C6orf222P0C671 652 aaPredicted RBP9.64□□□□□ -0.87
NEDD8-207ENST00000533242 NCLP19338 710 aaKnown RBP9.64□□□□□ -0.87
NEDD8-207ENST00000533242 ADCK5Q3MIX3 580 aa9.64□□□□□ -0.87
NEDD8-207ENST00000533242 TTC14Q96N46 770 aa9.64□□□□□ -0.87
NEDD8-207ENST00000533242 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.64□□□□□ -0.87
NEDD8-207ENST00000533242 ABHD16BQ9H3Z7 469 aa9.64□□□□□ -0.87
NEDD8-207ENST00000533242 PAG1Q9NWQ8 432 aa9.64□□□□□ -0.87
NEDD8-207ENST00000533242 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.64□□□□□ -0.87
NEDD8-207ENST00000533242 SMIM22K7EJ46 135 aa9.63□□□□□ -0.87
NEDD8-207ENST00000533242 LARGE1O95461 756 aa9.63□□□□□ -0.87
NEDD8-207ENST00000533242 CD4P01730 458 aa9.63□□□□□ -0.87
NEDD8-207ENST00000533242 IFIT2P09913 472 aaKnown RBP9.63□□□□□ -0.87
NEDD8-207ENST00000533242 ACRP10323 421 aa9.63□□□□□ -0.87
NEDD8-207ENST00000533242 ADGRE1Q14246 886 aa9.63□□□□□ -0.87
NEDD8-207ENST00000533242 ZSCAN23Q3MJ62 389 aa9.63□□□□□ -0.87
NEDD8-207ENST00000533242 VTI1AQ96AJ9 217 aa9.63□□□□□ -0.87
NEDD8-207ENST00000533242 ECHDC1Q9NTX5 307 aa9.63□□□□□ -0.87
NEDD8-207ENST00000533242 TMEM63CQ9P1W3 806 aa9.63□□□□□ -0.87
NEDD8-207ENST00000533242 NYAP2Q9P242 653 aa9.63□□□□□ -0.87
NEDD8-207ENST00000533242 TTC41PQ6P2S7 1318 aa9.63□□□□□ -0.87
NEDD8-207ENST00000533242 RAD21O60216 631 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 ZBED4O75132 1171 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 PLA2G5P39877 138 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 UBE3CQ15386 1083 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 CCDC144BQ3MJ40 725 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 RUFY3Q7L099 469 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 PRPF38AQ8NAV1 312 aaKnown RBP9.62□□□□□ -0.87
NEDD8-207ENST00000533242 FAM227BQ96M60 508 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 FGD4Q96M96 766 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 UHRF1Q96T88 793 aaPredicted RBP9.62□□□□□ -0.87
NEDD8-207ENST00000533242 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.62□□□□□ -0.87
NEDD8-207ENST00000533242 SEZ6LQ9BYH1 1024 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 PPP1R12CQ9BZL4 782 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 TSPYL2Q9H2G4 693 aaPredicted RBP9.62□□□□□ -0.87
NEDD8-207ENST00000533242 NKX2-4Q9H2Z4 354 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 GDPD2Q9HCC8 539 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 FBXO40Q9UH90 709 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 RIPK3Q9Y572 518 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 TCHHQ07283 1943 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 ADCY6O43306 1168 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 FGBP02675 491 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 CHGBP05060 677 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 AK2P54819 239 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 GNASQ5JWF2 1037 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 CTR9Q6PD62 1173 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 SLC43A3Q8NBI5 491 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 CHST13Q8NET6 341 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 ARPP21Q9UBL0 812 aaPredicted RBP9.62□□□□□ -0.87
NEDD8-207ENST00000533242 RAPGEFL1Q9UHV5 662 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 CTDP1Q9Y5B0 961 aaPredicted RBP9.62□□□□□ -0.87
NEDD8-207ENST00000533242 TAF6LQ9Y6J9 622 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 SLC4A4Q9Y6R1 1079 aa9.62□□□□□ -0.87
NEDD8-207ENST00000533242 UNC80Q8N2C7 3258 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 CTAGE5O15320 804 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 CABYRO75952 493 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 ATP5JP18859 108 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 PTMSP20962 102 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 IGFBP4P22692 258 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 CYP2C18P33260 490 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 MCM2P49736 904 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 IRX5P78411 483 aaPredicted RBP9.61□□□□□ -0.87
NEDD8-207ENST00000533242 CCDC85BQ15834 202 aaPredicted RBP9.61□□□□□ -0.87
NEDD8-207ENST00000533242 SLFNL1Q499Z3 407 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 ARMCX2Q7L311 632 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 NUP88Q99567 741 aaPredicted RBP9.61□□□□□ -0.87
NEDD8-207ENST00000533242 KATNBL1Q9H079 304 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 CXXC1Q9P0U4 656 aaPredicted RBP9.61□□□□□ -0.87
NEDD8-207ENST00000533242 ISY1Q9ULR0 285 aaKnown RBP9.61□□□□□ -0.87
NEDD8-207ENST00000533242 TCF20Q9UGU0 1960 aaKnown RBP9.61□□□□□ -0.87
NEDD8-207ENST00000533242 A0A0C4DFX4 3053 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 F5H6K3 240 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 NDUFB10O96000 172 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 RASA1P20936 1047 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 OAZ1P54368 228 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 ZNF445P59923 1031 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 KLRC3Q07444 240 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 SBK1Q52WX2 424 aa9.61□□□□□ -0.87
NEDD8-207ENST00000533242 ZSCAN25Q6NSZ9 544 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms