RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 LTBP3Q9NS15 1303 aa6.44□□□□□ -1.38
CD44-236ENST00000533222 A0A1W2PQH9 124 aa6.43□□□□□ -1.38
CD44-236ENST00000533222 TMCO5BA8MYB1 307 aa6.43□□□□□ -1.38
CD44-236ENST00000533222 CTIFO43310 598 aaKnown RBP6.43□□□□□ -1.38
CD44-236ENST00000533222 KIF5CO60282 957 aa6.43□□□□□ -1.38
CD44-236ENST00000533222 LRRN2O75325 713 aa6.43□□□□□ -1.38
CD44-236ENST00000533222 CPP00450 1065 aa6.43□□□□□ -1.38
CD44-236ENST00000533222 GBP1P32455 592 aa6.43□□□□□ -1.38
CD44-236ENST00000533222 CYP2C19P33261 490 aa6.43□□□□□ -1.38
CD44-236ENST00000533222 USP8P40818 1118 aa6.43□□□□□ -1.38
CD44-236ENST00000533222 CBX1P83916 185 aa6.43□□□□□ -1.38
CD44-236ENST00000533222 RGL3Q3MIN7 710 aa6.43□□□□□ -1.38
CD44-236ENST00000533222 TDRD10Q5VZ19 366 aaKnown RBP6.43□□□□□ -1.38
CD44-236ENST00000533222 UNC5AQ6ZN44 842 aa6.43□□□□□ -1.38
CD44-236ENST00000533222 TTC6Q86TZ1 520 aa6.43□□□□□ -1.38
CD44-236ENST00000533222 PPFIBP1Q86W92 1011 aa6.43□□□□□ -1.38
CD44-236ENST00000533222 TXLNBQ8N3L3 684 aa6.43□□□□□ -1.38
CD44-236ENST00000533222 HNRNPLLQ8WVV9 542 aaKnown RBP6.43□□□□□ -1.38
CD44-236ENST00000533222 KREMEN1Q96MU8 473 aa6.43□□□□□ -1.38
CD44-236ENST00000533222 TM9SF2Q99805 663 aa6.43□□□□□ -1.38
CD44-236ENST00000533222 SLX1AQ9BQ83 275 aa6.43□□□□□ -1.38
CD44-236ENST00000533222 FAM86C1Q9NVL1 165 aa6.43□□□□□ -1.38
CD44-236ENST00000533222 PIM2Q9P1W9 311 aa6.43□□□□□ -1.38
CD44-236ENST00000533222 PCDHB10Q9UN67 800 aa6.43□□□□□ -1.38
CD44-236ENST00000533222 SUGT1Q9Y2Z0 365 aa6.43□□□□□ -1.38
CD44-236ENST00000533222 CBX7O95931 251 aa6.42□□□□□ -1.38
CD44-236ENST00000533222 MAP2K2P36507 400 aa6.42□□□□□ -1.38
CD44-236ENST00000533222 FLT3P36888 993 aa6.42□□□□□ -1.38
CD44-236ENST00000533222 PRPHP41219 470 aa6.42□□□□□ -1.38
CD44-236ENST00000533222 EIF5P55010 431 aaKnown RBP6.42□□□□□ -1.38
CD44-236ENST00000533222 OXCT1P55809 520 aa6.42□□□□□ -1.38
CD44-236ENST00000533222 PPP2R5EQ16537 467 aa6.42□□□□□ -1.38
CD44-236ENST00000533222 ATP2B3Q16720 1220 aa6.42□□□□□ -1.38
CD44-236ENST00000533222 CYP27C1Q4G0S4 372 aa6.42□□□□□ -1.38
CD44-236ENST00000533222 DUSP27Q5VZP5 1158 aa6.42□□□□□ -1.38
CD44-236ENST00000533222 MCTP2Q6DN12 878 aa6.42□□□□□ -1.38
CD44-236ENST00000533222 PLD6Q8N2A8 252 aaKnown RBP6.42□□□□□ -1.38
CD44-236ENST00000533222 TAB3Q8N5C8 712 aaPredicted RBP6.42□□□□□ -1.38
CD44-236ENST00000533222 IQUBQ8NA54 791 aa6.42□□□□□ -1.38
CD44-236ENST00000533222 ANKRD20A12PQ8NF67 263 aa6.42□□□□□ -1.38
CD44-236ENST00000533222 GIMAP7Q8NHV1 300 aa6.42□□□□□ -1.38
CD44-236ENST00000533222 SREK1Q8WXA9 508 aaKnown RBP6.42□□□□□ -1.38
CD44-236ENST00000533222 Q96M66 194 aa6.42□□□□□ -1.38
CD44-236ENST00000533222 UTP14AQ9BVJ6 771 aaKnown RBP6.42□□□□□ -1.38
CD44-236ENST00000533222 DIAPH3Q9NSV4 1193 aa6.42□□□□□ -1.38
CD44-236ENST00000533222 PPP1R1BQ9UD71 204 aaPredicted RBP6.42□□□□□ -1.38
CD44-236ENST00000533222 LEMD3Q9Y2U8 911 aa6.42□□□□□ -1.38
CD44-236ENST00000533222 CTDP1Q9Y5B0 961 aaPredicted RBP6.42□□□□□ -1.38
CD44-236ENST00000533222 V9GYY5 206 aaPredicted RBP6.42□□□□□ -1.38
CD44-236ENST00000533222 DHX57Q6P158 1386 aaKnown RBP6.42□□□□□ -1.38
CD44-236ENST00000533222 B2RBV5 119 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 C9IYK1 514 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 IPO5O00410 1097 aaKnown RBP6.41□□□□□ -1.38
CD44-236ENST00000533222 CYP26A1O43174 497 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 MARCH6O60337 910 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 KINO60870 393 aaKnown RBP6.41□□□□□ -1.38
CD44-236ENST00000533222 HMMRO75330 724 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 CDKL5O76039 1030 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 SASH1O94885 1247 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 MED26O95402 600 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 RHBDL3P58872 404 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 NUCB2P80303 420 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 CYP27A1Q02318 531 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 DCTN1Q14203 1278 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 BMS1Q14692 1282 aaKnown RBP6.41□□□□□ -1.38
CD44-236ENST00000533222 SF3A1Q15459 793 aaKnown RBP6.41□□□□□ -1.38
CD44-236ENST00000533222 SLC5A9Q2M3M2 681 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 SFRP5Q5T4F7 317 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 AP1ARQ63HQ0 302 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 EP400NLQ6ZTU2 488 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 GET4Q7L5D6 327 aaPredicted RBP6.41□□□□□ -1.38
CD44-236ENST00000533222 SDCCAG8Q86SQ7 713 aaPredicted RBP6.41□□□□□ -1.38
CD44-236ENST00000533222 KRT222Q8N1A0 295 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 DRAXINQ8NBI3 349 aaPredicted RBP6.41□□□□□ -1.38
CD44-236ENST00000533222 OR6P1Q8NGX9 317 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 MICAL1Q8TDZ2 1067 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 C17orf50Q8WW18 174 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 TCP11Q8WWU5 503 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 ZNF396Q96N95 335 aaPredicted RBP6.41□□□□□ -1.38
CD44-236ENST00000533222 ARPC5LQ9BPX5 153 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 METTL22Q9BUU2 404 aaPredicted RBP6.41□□□□□ -1.38
CD44-236ENST00000533222 ZC3H7BQ9UGR2 993 aaKnown RBP6.41□□□□□ -1.38
CD44-236ENST00000533222 PLAGL2Q9UPG8 496 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 MAPK8IP1Q9UQF2 711 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 THRAP3Q9Y2W1 955 aaKnown RBP6.41□□□□□ -1.38
CD44-236ENST00000533222 COMMD10Q9Y6G5 202 aa6.41□□□□□ -1.38
CD44-236ENST00000533222 PES1O00541 588 aaKnown RBP6.4□□□□□ -1.38
CD44-236ENST00000533222 PPFIA4O75335 1185 aa6.4□□□□□ -1.38
CD44-236ENST00000533222 FOSL1P15407 271 aa6.4□□□□□ -1.38
CD44-236ENST00000533222 ALDH1B1P30837 517 aa6.4□□□□□ -1.38
CD44-236ENST00000533222 CCT2P78371 535 aaKnown RBP6.4□□□□□ -1.38
CD44-236ENST00000533222 FOXD4Q12950 439 aaPredicted RBP6.4□□□□□ -1.38
CD44-236ENST00000533222 IFT88Q13099 833 aa6.4□□□□□ -1.38
CD44-236ENST00000533222 SNW1Q13573 536 aaKnown RBP6.4□□□□□ -1.38
CD44-236ENST00000533222 LEKR1Q6ZMV7 388 aa6.4□□□□□ -1.38
CD44-236ENST00000533222 ANKS3Q6ZW76 656 aa6.4□□□□□ -1.38
CD44-236ENST00000533222 SPACA3Q8IXA5 215 aa6.4□□□□□ -1.38
CD44-236ENST00000533222 ACRBPQ8NEB7 543 aa6.4□□□□□ -1.38
CD44-236ENST00000533222 SMCR8Q8TEV9 937 aaPredicted RBP6.4□□□□□ -1.38
CD44-236ENST00000533222 TNPO1Q92973 898 aaKnown RBP6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms