RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 EFEMP2O95967 443 aa6.3□□□□□ -1.4
CD44-235ENST00000532339 ANKRD39Q53RE8 183 aa6.3□□□□□ -1.4
CD44-235ENST00000532339 LCE1DQ5T752 114 aa6.3□□□□□ -1.4
CD44-235ENST00000532339 CWF19L1Q69YN2 538 aaKnown RBP6.3□□□□□ -1.4
CD44-235ENST00000532339 CRTC3Q6UUV7 619 aa6.3□□□□□ -1.4
CD44-235ENST00000532339 LCNL1Q6ZST4 164 aa6.3□□□□□ -1.4
CD44-235ENST00000532339 ERVK13-1Q9NX77 482 aa6.3□□□□□ -1.4
CD44-235ENST00000532339 GPR55Q9Y2T6 319 aaPredicted RBP6.3□□□□□ -1.4
CD44-235ENST00000532339 TAF6LQ9Y6J9 622 aa6.3□□□□□ -1.4
CD44-235ENST00000532339 UHRF1BP1Q6BDS2 1440 aa6.3□□□□□ -1.4
CD44-235ENST00000532339 PHLDB1Q86UU1 1377 aa6.3□□□□□ -1.4
CD44-235ENST00000532339 WDR7Q9Y4E6 1490 aa6.29□□□□□ -1.4
CD44-235ENST00000532339 SHOXO15266 292 aa6.29□□□□□ -1.4
CD44-235ENST00000532339 NUAK1O60285 661 aa6.29□□□□□ -1.4
CD44-235ENST00000532339 ARL4AP40617 200 aa6.29□□□□□ -1.4
CD44-235ENST00000532339 HSF5Q4G112 596 aaPredicted RBP6.29□□□□□ -1.4
CD44-235ENST00000532339 TDRD10Q5VZ19 366 aaKnown RBP6.29□□□□□ -1.4
CD44-235ENST00000532339 TTC37Q6PGP7 1564 aa6.29□□□□□ -1.4
CD44-235ENST00000532339 UNC5AQ6ZN44 842 aa6.29□□□□□ -1.4
CD44-235ENST00000532339 AMIGO3Q86WK7 504 aa6.29□□□□□ -1.4
CD44-235ENST00000532339 LSRQ86X29 649 aaPredicted RBP6.29□□□□□ -1.4
CD44-235ENST00000532339 CRBNQ96SW2 442 aa6.29□□□□□ -1.4
CD44-235ENST00000532339 PLCD4Q9BRC7 762 aa6.29□□□□□ -1.4
CD44-235ENST00000532339 UACAQ9BZF9 1416 aa6.29□□□□□ -1.4
CD44-235ENST00000532339 AP5S1Q9NUS5 200 aa6.29□□□□□ -1.4
CD44-235ENST00000532339 TNIKQ9UKE5 1360 aa6.29□□□□□ -1.4
CD44-235ENST00000532339 ZNF335Q9H4Z2 1342 aaPredicted RBP6.28□□□□□ -1.4
CD44-235ENST00000532339 A0A1W2PQ45 241 aaPredicted RBP6.28□□□□□ -1.4
CD44-235ENST00000532339 A0A1W2PQY0 241 aa6.28□□□□□ -1.4
CD44-235ENST00000532339 RANGAP1P46060 587 aaPredicted RBP6.28□□□□□ -1.4
CD44-235ENST00000532339 SRSF3P84103 164 aaKnown RBP6.28□□□□□ -1.4
CD44-235ENST00000532339 PAK2Q13177 524 aa6.28□□□□□ -1.4
CD44-235ENST00000532339 LAPTM5Q13571 262 aa6.28□□□□□ -1.4
CD44-235ENST00000532339 NOL9Q5SY16 702 aaKnown RBP6.28□□□□□ -1.4
CD44-235ENST00000532339 DCAF15Q66K64 600 aa6.28□□□□□ -1.4
CD44-235ENST00000532339 OLFML2BQ68BL8 750 aa6.28□□□□□ -1.4
CD44-235ENST00000532339 SLCO6A1Q86UG4 719 aa6.28□□□□□ -1.4
CD44-235ENST00000532339 PPFIBP1Q86W92 1011 aa6.28□□□□□ -1.4
CD44-235ENST00000532339 GP6Q9HCN6 339 aa6.28□□□□□ -1.4
CD44-235ENST00000532339 ERICH3Q5RHP9 1530 aa6.28□□□□□ -1.4
CD44-235ENST00000532339 TTBK1Q5TCY1 1321 aaPredicted RBP6.27□□□□□ -1.41
CD44-235ENST00000532339 ABLIM1O14639 778 aa6.27□□□□□ -1.41
CD44-235ENST00000532339 RAPGEF3O95398 923 aa6.27□□□□□ -1.41
CD44-235ENST00000532339 CD247P20963 164 aa6.27□□□□□ -1.41
CD44-235ENST00000532339 ERVFRD-1P60508 538 aa6.27□□□□□ -1.41
CD44-235ENST00000532339 ZYXQ15942 572 aaKnown RBP6.27□□□□□ -1.41
CD44-235ENST00000532339 AXDND1Q5T1B0 1012 aaPredicted RBP6.27□□□□□ -1.41
CD44-235ENST00000532339 RUFY4Q6ZNE9 571 aa6.27□□□□□ -1.41
CD44-235ENST00000532339 METTL16Q86W50 562 aaKnown RBP6.27□□□□□ -1.41
CD44-235ENST00000532339 NAT16Q8N8M0 369 aa6.27□□□□□ -1.41
CD44-235ENST00000532339 SLC12A9Q9BXP2 914 aa6.27□□□□□ -1.41
CD44-235ENST00000532339 GCM1Q9NP62 436 aa6.27□□□□□ -1.41
CD44-235ENST00000532339 GINM1Q9NU53 330 aa6.27□□□□□ -1.41
CD44-235ENST00000532339 SIRT5Q9NXA8 310 aa6.27□□□□□ -1.41
CD44-235ENST00000532339 ZNF214Q9UL59 606 aaPredicted RBP6.27□□□□□ -1.41
CD44-235ENST00000532339 CNOT6Q9ULM6 557 aaKnown RBP6.27□□□□□ -1.41
CD44-235ENST00000532339 FHOD1Q9Y613 1164 aa6.27□□□□□ -1.41
CD44-235ENST00000532339 SLC12A7Q9Y666 1083 aa6.27□□□□□ -1.41
CD44-235ENST00000532339 NCOA1Q15788 1441 aa6.26□□□□□ -1.41
CD44-235ENST00000532339 RFXAPO00287 272 aa6.26□□□□□ -1.41
CD44-235ENST00000532339 TP53P04637 393 aaPredicted RBP6.26□□□□□ -1.41
CD44-235ENST00000532339 MPOP05164 745 aa6.26□□□□□ -1.41
CD44-235ENST00000532339 GSTM1P09488 218 aa6.26□□□□□ -1.41
CD44-235ENST00000532339 ITGA4P13612 1032 aa6.26□□□□□ -1.41
CD44-235ENST00000532339 PRKCAP17252 672 aa6.26□□□□□ -1.41
CD44-235ENST00000532339 NOP2P46087 812 aaKnown RBP6.26□□□□□ -1.41
CD44-235ENST00000532339 SOX9P48436 509 aa6.26□□□□□ -1.41
CD44-235ENST00000532339 ZNF445P59923 1031 aa6.26□□□□□ -1.41
CD44-235ENST00000532339 YBX1P67809 324 aaKnown RBP6.26□□□□□ -1.41
CD44-235ENST00000532339 CYP4F8P98187 520 aa6.26□□□□□ -1.41
CD44-235ENST00000532339 TMEM62Q0P6H9 643 aa6.26□□□□□ -1.41
CD44-235ENST00000532339 ZNF385BQ569K4 471 aa6.26□□□□□ -1.41
CD44-235ENST00000532339 RTP2Q5QGT7 225 aa6.26□□□□□ -1.41
CD44-235ENST00000532339 CCDC81Q6ZN84 652 aa6.26□□□□□ -1.41
CD44-235ENST00000532339 NUP43Q8NFH3 380 aa6.26□□□□□ -1.41
CD44-235ENST00000532339 GPRASP2Q96D09 838 aa6.26□□□□□ -1.41
CD44-235ENST00000532339 SGPP1Q9BX95 441 aa6.26□□□□□ -1.41
CD44-235ENST00000532339 IRF2BPLQ9H1B7 796 aa6.26□□□□□ -1.41
CD44-235ENST00000532339 ACSL6Q9UKU0 697 aa6.26□□□□□ -1.41
CD44-235ENST00000532339 EFR3BQ9Y2G0 817 aa6.26□□□□□ -1.41
CD44-235ENST00000532339 SF3B6Q9Y3B4 125 aaKnown RBP6.26□□□□□ -1.41
CD44-235ENST00000532339 FANCAO15360 1455 aa6.26□□□□□ -1.41
CD44-235ENST00000532339 SETD1AO15047 1707 aaKnown RBP6.25□□□□□ -1.41
CD44-235ENST00000532339 A0A087WZG4 1122 aa6.25□□□□□ -1.41
CD44-235ENST00000532339 H0Y8X5 98 aa6.25□□□□□ -1.41
CD44-235ENST00000532339 SDHBP21912 280 aa6.25□□□□□ -1.41
CD44-235ENST00000532339 VIPR1P32241 457 aa6.25□□□□□ -1.41
CD44-235ENST00000532339 EIF6P56537 245 aaKnown RBP6.25□□□□□ -1.41
CD44-235ENST00000532339 TCEAL1Q15170 157 aa6.25□□□□□ -1.41
CD44-235ENST00000532339 HLA-DQA1Q5Y7H0 255 aa6.25□□□□□ -1.41
CD44-235ENST00000532339 CYP2R1Q6VVX0 501 aa6.25□□□□□ -1.41
CD44-235ENST00000532339 OR6P1Q8NGX9 317 aa6.25□□□□□ -1.41
CD44-235ENST00000532339 RASGRP4Q8TDF6 673 aa6.25□□□□□ -1.41
CD44-235ENST00000532339 BRF1Q92994 677 aa6.25□□□□□ -1.41
CD44-235ENST00000532339 MRRFQ96E11 262 aaKnown RBP6.25□□□□□ -1.41
CD44-235ENST00000532339 SRRTQ9BXP5 876 aaKnown RBP6.25□□□□□ -1.41
CD44-235ENST00000532339 FAM86C1Q9NVL1 165 aa6.25□□□□□ -1.41
CD44-235ENST00000532339 MBD1Q9UIS9 605 aaPredicted RBP6.25□□□□□ -1.41
CD44-235ENST00000532339 ZNF451Q9Y4E5 1061 aa6.25□□□□□ -1.41
CD44-235ENST00000532339 KCTD3Q9Y597 815 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms