RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 POU3F2P20265 443 aaPredicted RBP4.16□□□□□ -1.74
CD44-234ENST00000531873 GABREP78334 506 aa4.16□□□□□ -1.74
CD44-234ENST00000531873 SEPT7Q16181 437 aaKnown RBP4.16□□□□□ -1.74
CD44-234ENST00000531873 BRDTQ58F21 947 aaPredicted RBP4.16□□□□□ -1.74
CD44-234ENST00000531873 NOL9Q5SY16 702 aaKnown RBP4.16□□□□□ -1.74
CD44-234ENST00000531873 CNNM4Q6P4Q7 775 aa4.16□□□□□ -1.74
CD44-234ENST00000531873 PKN3Q6P5Z2 889 aa4.16□□□□□ -1.74
CD44-234ENST00000531873 C22orf34Q6ZV56 151 aa4.16□□□□□ -1.74
CD44-234ENST00000531873 FERMT3Q86UX7 667 aa4.16□□□□□ -1.74
CD44-234ENST00000531873 KREMEN2Q8NCW0 462 aa4.16□□□□□ -1.74
CD44-234ENST00000531873 SHKBP1Q8TBC3 707 aa4.16□□□□□ -1.74
CD44-234ENST00000531873 KCTD13Q8WZ19 329 aa4.16□□□□□ -1.74
CD44-234ENST00000531873 DDX1Q92499 740 aaKnown RBP4.16□□□□□ -1.74
CD44-234ENST00000531873 IPO9Q96P70 1041 aaKnown RBP4.16□□□□□ -1.74
CD44-234ENST00000531873 FAM83CQ9BQN1 747 aa4.16□□□□□ -1.74
CD44-234ENST00000531873 HDAC8Q9BY41 377 aa4.16□□□□□ -1.74
CD44-234ENST00000531873 TPX2Q9ULW0 747 aaKnown RBP4.16□□□□□ -1.74
CD44-234ENST00000531873 DIS3Q9Y2L1 958 aaKnown RBP4.16□□□□□ -1.74
CD44-234ENST00000531873 THRAP3Q9Y2W1 955 aaKnown RBP4.16□□□□□ -1.74
CD44-234ENST00000531873 TRAF6Q9Y4K3 522 aa4.16□□□□□ -1.74
CD44-234ENST00000531873 STXBP3O00186 592 aa4.15□□□□□ -1.75
CD44-234ENST00000531873 ARNTLO00327 626 aa4.15□□□□□ -1.75
CD44-234ENST00000531873 RASGRP1O95267 797 aa4.15□□□□□ -1.75
CD44-234ENST00000531873 PRNPP04156 253 aa4.15□□□□□ -1.75
CD44-234ENST00000531873 S100BP04271 92 aaPredicted RBP4.15□□□□□ -1.75
CD44-234ENST00000531873 ASLP04424 464 aa4.15□□□□□ -1.75
CD44-234ENST00000531873 FAM87AP0C7U9 286 aa4.15□□□□□ -1.75
CD44-234ENST00000531873 ZNF865P0CJ78 1059 aaPredicted RBP4.15□□□□□ -1.75
CD44-234ENST00000531873 RXRBP28702 533 aa4.15□□□□□ -1.75
CD44-234ENST00000531873 HOXC12P31275 282 aa4.15□□□□□ -1.75
CD44-234ENST00000531873 ADMP35318 185 aa4.15□□□□□ -1.75
CD44-234ENST00000531873 NFKB2Q00653 900 aa4.15□□□□□ -1.75
CD44-234ENST00000531873 TNK2Q07912 1038 aa4.15□□□□□ -1.75
CD44-234ENST00000531873 SCRN1Q12765 414 aa4.15□□□□□ -1.75
CD44-234ENST00000531873 NMIQ13287 307 aaPredicted RBP4.15□□□□□ -1.75
CD44-234ENST00000531873 PCBP1Q15365 356 aaKnown RBP eCLIP4.15□□□□□ -1.75
CD44-234ENST00000531873 STYK1Q6J9G0 422 aa4.15□□□□□ -1.75
CD44-234ENST00000531873 CRTC3Q6UUV7 619 aa4.15□□□□□ -1.75
CD44-234ENST00000531873 MAMDC2Q7Z304 686 aaPredicted RBP4.15□□□□□ -1.75
CD44-234ENST00000531873 SHISA5Q8N114 240 aa4.15□□□□□ -1.75
CD44-234ENST00000531873 PPM1KQ8N3J5 372 aa4.15□□□□□ -1.75
CD44-234ENST00000531873 COPS5Q92905 334 aa4.15□□□□□ -1.75
CD44-234ENST00000531873 PTPRN2Q92932 1015 aa4.15□□□□□ -1.75
CD44-234ENST00000531873 COX4I2Q96KJ9 171 aa4.15□□□□□ -1.75
CD44-234ENST00000531873 HEXIM2Q96MH2 286 aaKnown RBP4.15□□□□□ -1.75
CD44-234ENST00000531873 MTFR1LQ9H019 292 aa4.15□□□□□ -1.75
CD44-234ENST00000531873 PRDM5Q9NQX1 630 aaPredicted RBP4.15□□□□□ -1.75
CD44-234ENST00000531873 CYP26B1Q9NR63 512 aa4.15□□□□□ -1.75
CD44-234ENST00000531873 CHST7Q9NS84 486 aa4.15□□□□□ -1.75
CD44-234ENST00000531873 CAPN6Q9Y6Q1 641 aa4.15□□□□□ -1.75
CD44-234ENST00000531873 U3KQE9 123 aa4.15□□□□□ -1.75
CD44-234ENST00000531873 TCRBV16S1A1N1A0A5B0 115 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 DBX1A6NMT0 343 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 MEIS1O00470 390 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 EFCAB14O75071 495 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 THBDP07204 575 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 SRFP11831 508 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 CYP7A1P22680 504 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 PMLP29590 882 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 HOXA10P31260 410 aaPredicted RBP4.14□□□□□ -1.75
CD44-234ENST00000531873 IGFALSP35858 605 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 ECI1P42126 302 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 KIR3DL1P43629 444 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 KCNJ6P48051 423 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 AMPD2Q01433 879 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 EXOSC10Q01780 885 aaKnown RBP4.14□□□□□ -1.75
CD44-234ENST00000531873 NFKBIBQ15653 356 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 MSMPQ1L6U9 139 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 DPY19L1Q2PZI1 675 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 CT47A1Q5JQC4 288 aaPredicted RBP4.14□□□□□ -1.75
CD44-234ENST00000531873 ODR4Q5SWX8 454 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 SFRP5Q5T4F7 317 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 KCNT2Q6UVM3 1135 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 NFXL1Q6ZNB6 911 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 BEND4Q6ZU67 534 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 LHFPL2Q6ZUX7 228 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 USP53Q70EK8 1073 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 CCDC103Q8IW40 242 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 RAVER1Q8IY67 606 aaKnown RBP4.14□□□□□ -1.75
CD44-234ENST00000531873 NPLOC4Q8TAT6 608 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 FRS2Q8WU20 508 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 JDP2Q8WYK2 163 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 CCDC140Q96MF4 163 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 DSCC1Q9BVC3 393 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 PIM2Q9P1W9 311 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 TMEFF2Q9UIK5 374 aaPredicted RBP4.14□□□□□ -1.75
CD44-234ENST00000531873 MCM8Q9UJA3 840 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 G3BP2Q9UN86 482 aaKnown RBP4.14□□□□□ -1.75
CD44-234ENST00000531873 SF3B6Q9Y3B4 125 aaKnown RBP4.14□□□□□ -1.75
CD44-234ENST00000531873 NPFFR2Q9Y5X5 522 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 ST14Q9Y5Y6 855 aa4.14□□□□□ -1.75
CD44-234ENST00000531873 AURKAO14965 403 aa4.13□□□□□ -1.75
CD44-234ENST00000531873 OPA1O60313 960 aa4.13□□□□□ -1.75
CD44-234ENST00000531873 KPNA6O60684 536 aa4.13□□□□□ -1.75
CD44-234ENST00000531873 CRTAMO95727 393 aa4.13□□□□□ -1.75
CD44-234ENST00000531873 CBX7O95931 251 aa4.13□□□□□ -1.75
CD44-234ENST00000531873 CPP00450 1065 aa4.13□□□□□ -1.75
CD44-234ENST00000531873 JMJD7P0C870 316 aa4.13□□□□□ -1.75
CD44-234ENST00000531873 IFNGR1P15260 489 aa4.13□□□□□ -1.75
CD44-234ENST00000531873 KCNA6P17658 529 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms