RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 CWC22Q9HCG8 908 aaKnown RBP7.31□□□□□ -1.24
CD44-231ENST00000531110 EBF1Q9UH73 591 aa7.31□□□□□ -1.24
CD44-231ENST00000531110 A0A0U1RQG5 324 aaPredicted RBP7.3□□□□□ -1.24
CD44-231ENST00000531110 PPM1GO15355 546 aaPredicted RBP7.3□□□□□ -1.24
CD44-231ENST00000531110 TBC1D8O95759 1140 aa7.3□□□□□ -1.24
CD44-231ENST00000531110 ITGAVP06756 1048 aa7.3□□□□□ -1.24
CD44-231ENST00000531110 HOXC12P31275 282 aa7.3□□□□□ -1.24
CD44-231ENST00000531110 ANP32AP39687 249 aaKnown RBP7.3□□□□□ -1.24
CD44-231ENST00000531110 CEBPAP49715 358 aaPredicted RBP7.3□□□□□ -1.24
CD44-231ENST00000531110 CORO7P57737 925 aa7.3□□□□□ -1.24
CD44-231ENST00000531110 HLA-DQA1Q5Y7H0 255 aa7.3□□□□□ -1.24
CD44-231ENST00000531110 SLCO6A1Q86UG4 719 aa7.3□□□□□ -1.24
CD44-231ENST00000531110 LRRC47Q8N1G4 583 aaKnown RBP7.3□□□□□ -1.24
CD44-231ENST00000531110 PTCHD1Q96NR3 888 aa7.3□□□□□ -1.24
CD44-231ENST00000531110 WTIPA6NIX2 430 aaPredicted RBP7.29□□□□□ -1.24
CD44-231ENST00000531110 KCNH1O95259 989 aa7.29□□□□□ -1.24
CD44-231ENST00000531110 GLI1P08151 1106 aa7.29□□□□□ -1.24
CD44-231ENST00000531110 IFNGR1P15260 489 aa7.29□□□□□ -1.24
CD44-231ENST00000531110 CNGB1Q14028 1251 aaPredicted RBP7.29□□□□□ -1.24
CD44-231ENST00000531110 RASA3Q14644 834 aa7.29□□□□□ -1.24
CD44-231ENST00000531110 TESK1Q15569 626 aa7.29□□□□□ -1.24
CD44-231ENST00000531110 GTF2IRD2BQ6EKJ0 949 aa7.29□□□□□ -1.24
CD44-231ENST00000531110 GALNT18Q6P9A2 607 aa7.29□□□□□ -1.24
CD44-231ENST00000531110 GTF2IRD2Q86UP8 949 aa7.29□□□□□ -1.24
CD44-231ENST00000531110 KSR1Q8IVT5 923 aa7.29□□□□□ -1.24
CD44-231ENST00000531110 ABHD4Q8TB40 342 aa7.29□□□□□ -1.24
CD44-231ENST00000531110 MCMBPQ9BTE3 642 aa7.29□□□□□ -1.24
CD44-231ENST00000531110 CRTAC1Q9NQ79 661 aa7.29□□□□□ -1.24
CD44-231ENST00000531110 LRP2BPQ9P2M1 347 aa7.29□□□□□ -1.24
CD44-231ENST00000531110 WASHC2AQ641Q2 1341 aa7.28□□□□□ -1.24
CD44-231ENST00000531110 C2orf71A6NGG8 1288 aa7.28□□□□□ -1.24
CD44-231ENST00000531110 NOTOA8MTQ0 251 aa7.28□□□□□ -1.24
CD44-231ENST00000531110 CPP00450 1065 aa7.28□□□□□ -1.24
CD44-231ENST00000531110 PTMAP06454 111 aaKnown RBP7.28□□□□□ -1.24
CD44-231ENST00000531110 MCCP23508 829 aa7.28□□□□□ -1.24
CD44-231ENST00000531110 SEPHS1P49903 392 aa7.28□□□□□ -1.24
CD44-231ENST00000531110 RTP1P59025 263 aa7.28□□□□□ -1.24
CD44-231ENST00000531110 NFE2L2Q16236 605 aa7.28□□□□□ -1.24
CD44-231ENST00000531110 KCNMB1Q16558 191 aa7.28□□□□□ -1.24
CD44-231ENST00000531110 NAT16Q8N8M0 369 aa7.28□□□□□ -1.24
CD44-231ENST00000531110 TMEM52Q8NDY8 209 aa7.28□□□□□ -1.24
CD44-231ENST00000531110 NLGN2Q8NFZ4 835 aa7.28□□□□□ -1.24
CD44-231ENST00000531110 FAM168AQ92567 244 aa7.28□□□□□ -1.24
CD44-231ENST00000531110 DEPDC7Q96QD5 511 aa7.28□□□□□ -1.24
CD44-231ENST00000531110 OSBPL2Q9H1P3 480 aa7.28□□□□□ -1.24
CD44-231ENST00000531110 FAM53CQ9NYF3 392 aa7.28□□□□□ -1.24
CD44-231ENST00000531110 GPR55Q9Y2T6 319 aaPredicted RBP7.28□□□□□ -1.24
CD44-231ENST00000531110 A0A1W2PQU0 124 aa7.27□□□□□ -1.25
CD44-231ENST00000531110 STXBP3O00186 592 aa7.27□□□□□ -1.25
CD44-231ENST00000531110 VAMP4O75379 141 aa7.27□□□□□ -1.25
CD44-231ENST00000531110 USP2O75604 605 aaPredicted RBP7.27□□□□□ -1.25
CD44-231ENST00000531110 HSP90AA2PQ14568 343 aaPredicted RBP7.27□□□□□ -1.25
CD44-231ENST00000531110 SLC14A2Q15849 920 aa7.27□□□□□ -1.25
CD44-231ENST00000531110 LONRF2Q1L5Z9 754 aa7.27□□□□□ -1.25
CD44-231ENST00000531110 TMEM67Q5HYA8 995 aa7.27□□□□□ -1.25
CD44-231ENST00000531110 ACBD5Q5T8D3 534 aaPredicted RBP7.27□□□□□ -1.25
CD44-231ENST00000531110 E4F1Q66K89 784 aaPredicted RBP7.27□□□□□ -1.25
CD44-231ENST00000531110 ZPBP2Q6X784 338 aa7.27□□□□□ -1.25
CD44-231ENST00000531110 CEP128Q6ZU80 1094 aa7.27□□□□□ -1.25
CD44-231ENST00000531110 NLRX1Q86UT6 975 aa7.27□□□□□ -1.25
CD44-231ENST00000531110 MMP19Q99542 508 aa7.27□□□□□ -1.25
CD44-231ENST00000531110 ACSL6Q9UKU0 697 aa7.27□□□□□ -1.25
CD44-231ENST00000531110 ERVFC1P60507 584 aa7.26□□□□□ -1.25
CD44-231ENST00000531110 PPP2R2AP63151 447 aa7.26□□□□□ -1.25
CD44-231ENST00000531110 DPY19L1Q2PZI1 675 aa7.26□□□□□ -1.25
CD44-231ENST00000531110 MTERF2Q49AM1 385 aa7.26□□□□□ -1.25
CD44-231ENST00000531110 HSF5Q4G112 596 aaPredicted RBP7.26□□□□□ -1.25
CD44-231ENST00000531110 ZC3H12BQ5HYM0 836 aaKnown RBP7.26□□□□□ -1.25
CD44-231ENST00000531110 FYB2Q5VWT5 728 aa7.26□□□□□ -1.25
CD44-231ENST00000531110 IQCEQ6IPM2 695 aa7.26□□□□□ -1.25
CD44-231ENST00000531110 PPP1R14AQ96A00 147 aa7.26□□□□□ -1.25
CD44-231ENST00000531110 SHISA4Q96DD7 197 aa7.26□□□□□ -1.25
CD44-231ENST00000531110 DNAJC2Q99543 621 aaKnown RBP7.26□□□□□ -1.25
CD44-231ENST00000531110 SLC6A17Q9H1V8 727 aa7.26□□□□□ -1.25
CD44-231ENST00000531110 SNTG2Q9NY99 539 aa7.26□□□□□ -1.25
CD44-231ENST00000531110 YBX2Q9Y2T7 364 aaKnown RBP7.26□□□□□ -1.25
CD44-231ENST00000531110 TAF6LQ9Y6J9 622 aa7.26□□□□□ -1.25
CD44-231ENST00000531110 CARMIL2Q6F5E8 1435 aa7.26□□□□□ -1.25
CD44-231ENST00000531110 CLGNO14967 610 aa7.25□□□□□ -1.25
CD44-231ENST00000531110 FGFR1P11362 822 aa7.25□□□□□ -1.25
CD44-231ENST00000531110 PAMP19021 973 aa7.25□□□□□ -1.25
CD44-231ENST00000531110 PTMSP20962 102 aa7.25□□□□□ -1.25
CD44-231ENST00000531110 CANXP27824 592 aaKnown RBP7.25□□□□□ -1.25
CD44-231ENST00000531110 GFRA1P56159 465 aa7.25□□□□□ -1.25
CD44-231ENST00000531110 SCRN1Q12765 414 aa7.25□□□□□ -1.25
CD44-231ENST00000531110 MAP4K2Q12851 820 aa7.25□□□□□ -1.25
CD44-231ENST00000531110 IFRD2Q12894 506 aaPredicted RBP7.25□□□□□ -1.25
CD44-231ENST00000531110 LAPTM5Q13571 262 aa7.25□□□□□ -1.25
CD44-231ENST00000531110 IRF2BP1Q8IU81 584 aa7.25□□□□□ -1.25
CD44-231ENST00000531110 NPLOC4Q8TAT6 608 aa7.25□□□□□ -1.25
CD44-231ENST00000531110 BTN2A2Q8WVV5 523 aa7.25□□□□□ -1.25
CD44-231ENST00000531110 AARSD1Q9BTE6 412 aaKnown RBP7.25□□□□□ -1.25
CD44-231ENST00000531110 PAX4O43316 350 aa7.24□□□□□ -1.25
CD44-231ENST00000531110 PNLIPP16233 465 aa7.24□□□□□ -1.25
CD44-231ENST00000531110 L1CAMP32004 1257 aa7.24□□□□□ -1.25
CD44-231ENST00000531110 MMP14P50281 582 aa7.24□□□□□ -1.25
CD44-231ENST00000531110 TIGD5Q53EQ6 642 aa7.24□□□□□ -1.25
CD44-231ENST00000531110 JMYQ8N9B5 988 aa7.24□□□□□ -1.25
CD44-231ENST00000531110 SPATA9Q9BWV2 254 aa7.24□□□□□ -1.25
CD44-231ENST00000531110 RNF32Q9H0A6 362 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms