RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 MCMDC2Q4G0Z9 681 aa13.42□□□□□ -0.26
VPS28-214ENST00000531032 MUM1L1Q5H9M0 696 aa13.42□□□□□ -0.26
VPS28-214ENST00000531032 CCDC174Q6PII3 467 aa13.42□□□□□ -0.26
VPS28-214ENST00000531032 DCAF4Q8WV16 495 aa13.42□□□□□ -0.26
VPS28-214ENST00000531032 FAM227BQ96M60 508 aa13.42□□□□□ -0.26
VPS28-214ENST00000531032 CYP39A1Q9NYL5 469 aa13.42□□□□□ -0.26
VPS28-214ENST00000531032 GNEQ9Y223 722 aaKnown RBP13.42□□□□□ -0.26
VPS28-214ENST00000531032 FGAP02671 866 aa13.41□□□□□ -0.26
VPS28-214ENST00000531032 ICAM1P05362 532 aa13.41□□□□□ -0.26
VPS28-214ENST00000531032 SNAP25P60880 206 aa13.41□□□□□ -0.26
VPS28-214ENST00000531032 TNFAIP2Q03169 654 aa13.41□□□□□ -0.26
VPS28-214ENST00000531032 MFSD5Q6N075 450 aa13.41□□□□□ -0.26
VPS28-214ENST00000531032 BTNL9Q6UXG8 535 aa13.41□□□□□ -0.26
VPS28-214ENST00000531032 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.41□□□□□ -0.26
VPS28-214ENST00000531032 FAM126BQ8IXS8 530 aa13.41□□□□□ -0.26
VPS28-214ENST00000531032 RANBP17Q9H2T7 1088 aaKnown RBP13.41□□□□□ -0.26
VPS28-214ENST00000531032 TCP11L1Q9NUJ3 509 aa13.41□□□□□ -0.26
VPS28-214ENST00000531032 CCPG1Q9ULG6 757 aa13.41□□□□□ -0.26
VPS28-214ENST00000531032 HSPD1P10809 573 aaKnown RBP13.4□□□□□ -0.26
VPS28-214ENST00000531032 TOP1P11387 765 aaKnown RBP13.4□□□□□ -0.26
VPS28-214ENST00000531032 BEX3Q00994 111 aa13.4□□□□□ -0.26
VPS28-214ENST00000531032 CCDC96Q2M329 555 aa13.4□□□□□ -0.26
VPS28-214ENST00000531032 TTBK2Q6IQ55 1244 aa13.4□□□□□ -0.26
VPS28-214ENST00000531032 TLK2Q86UE8 772 aa13.4□□□□□ -0.26
VPS28-214ENST00000531032 ZNF589Q86UQ0 364 aaPredicted RBP13.4□□□□□ -0.26
VPS28-214ENST00000531032 SLC43A3Q8NBI5 491 aa13.4□□□□□ -0.26
VPS28-214ENST00000531032 MORC4Q8TE76 937 aa13.4□□□□□ -0.26
VPS28-214ENST00000531032 VTI1AQ96AJ9 217 aa13.4□□□□□ -0.26
VPS28-214ENST00000531032 MTMR7Q9Y216 660 aa13.4□□□□□ -0.26
VPS28-214ENST00000531032 DDX49Q9Y6V7 483 aaKnown RBP13.4□□□□□ -0.26
VPS28-214ENST00000531032 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.39□□□□□ -0.27
VPS28-214ENST00000531032 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.39□□□□□ -0.27
VPS28-214ENST00000531032 CABYRO75952 493 aa13.39□□□□□ -0.27
VPS28-214ENST00000531032 CD4P01730 458 aa13.39□□□□□ -0.27
VPS28-214ENST00000531032 SMPD1P17405 629 aa13.39□□□□□ -0.27
VPS28-214ENST00000531032 PPIGQ13427 754 aaKnown RBP eCLIP13.39□□□□□ -0.278e-8■□□□□ 11.1
VPS28-214ENST00000531032 FSCN1Q16658 493 aaKnown RBP13.39□□□□□ -0.27
VPS28-214ENST00000531032 TAPT1Q6NXT6 567 aa13.39□□□□□ -0.27
VPS28-214ENST00000531032 NOL8Q76FK4 1167 aaKnown RBP13.39□□□□□ -0.27
VPS28-214ENST00000531032 FBXO16Q8IX29 292 aaPredicted RBP13.39□□□□□ -0.27
VPS28-214ENST00000531032 MAFAQ8NHW3 353 aaPredicted RBP13.39□□□□□ -0.27
VPS28-214ENST00000531032 TMEM47Q9BQJ4 181 aa13.39□□□□□ -0.27
VPS28-214ENST00000531032 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.39□□□□□ -0.274e-7■■■■□ 21.8
VPS28-214ENST00000531032 VTA1Q9NP79 307 aa13.39□□□□□ -0.27
VPS28-214ENST00000531032 TOMM22Q9NS69 142 aa13.39□□□□□ -0.27
VPS28-214ENST00000531032 Q9Y3F1 56 aa13.39□□□□□ -0.27
VPS28-214ENST00000531032 CCDC171Q6TFL3 1326 aa13.39□□□□□ -0.27
VPS28-214ENST00000531032 LOC102724159A0A0B4J2E5 919 aa13.38□□□□□ -0.27
VPS28-214ENST00000531032 TLR3O15455 904 aaKnown RBP13.38□□□□□ -0.27
VPS28-214ENST00000531032 PDHBP11177 359 aa13.38□□□□□ -0.27
VPS28-214ENST00000531032 PCP11498 1178 aaKnown RBP13.38□□□□□ -0.27
VPS28-214ENST00000531032 CSF2RAP15509 400 aa13.38□□□□□ -0.27
VPS28-214ENST00000531032 DNAJB2P25686 324 aa13.38□□□□□ -0.27
VPS28-214ENST00000531032 SLC16A2P36021 539 aa13.38□□□□□ -0.27
VPS28-214ENST00000531032 NMIQ13287 307 aaPredicted RBP13.38□□□□□ -0.27
VPS28-214ENST00000531032 AAMPQ13685 434 aa13.38□□□□□ -0.27
VPS28-214ENST00000531032 PWP2Q15269 919 aaKnown RBP13.38□□□□□ -0.27
VPS28-214ENST00000531032 RRP12Q5JTH9 1297 aaKnown RBP13.38□□□□□ -0.27
VPS28-214ENST00000531032 TMEM240Q5SV17 173 aa13.38□□□□□ -0.27
VPS28-214ENST00000531032 RASIP1Q5U651 963 aa13.38□□□□□ -0.27
VPS28-214ENST00000531032 SYDE2Q5VT97 1194 aa13.38□□□□□ -0.27
VPS28-214ENST00000531032 IQSEC1Q6DN90 963 aa13.38□□□□□ -0.27
VPS28-214ENST00000531032 CXCL17Q6UXB2 119 aa13.38□□□□□ -0.27
VPS28-214ENST00000531032 NSMFQ6X4W1 530 aa13.38□□□□□ -0.27
VPS28-214ENST00000531032 C16orf59Q7L2K0 433 aa13.38□□□□□ -0.27
VPS28-214ENST00000531032 TMEM199Q8N511 208 aa13.38□□□□□ -0.27
VPS28-214ENST00000531032 MYLIPQ8WY64 445 aa13.38□□□□□ -0.27
VPS28-214ENST00000531032 PURBQ96QR8 312 aaKnown RBP13.38□□□□□ -0.27
VPS28-214ENST00000531032 PDGFCQ9NRA1 345 aa13.38□□□□□ -0.27
VPS28-214ENST00000531032 PRUNE2Q8WUY3 3088 aa13.38□□□□□ -0.27
VPS28-214ENST00000531032 FRMPD2Q68DX3 1309 aaPredicted RBP13.38□□□□□ -0.27
VPS28-214ENST00000531032 LAMA4Q16363 1823 aa13.37□□□□□ -0.27
VPS28-214ENST00000531032 NFIBO00712 420 aa13.37□□□□□ -0.27
VPS28-214ENST00000531032 DYNC1LI2O43237 492 aaPredicted RBP13.37□□□□□ -0.27
VPS28-214ENST00000531032 ZEB2O60315 1214 aa13.37□□□□□ -0.27
VPS28-214ENST00000531032 SNHG28P0DPA3 235 aa13.37□□□□□ -0.27
VPS28-214ENST00000531032 PTGS1P23219 599 aa13.37□□□□□ -0.27
VPS28-214ENST00000531032 ALDH5A1P51649 535 aaPredicted RBP13.37□□□□□ -0.27
VPS28-214ENST00000531032 ITGA7Q13683 1181 aa13.37□□□□□ -0.27
VPS28-214ENST00000531032 BAATQ14032 418 aaPredicted RBP13.37□□□□□ -0.27
VPS28-214ENST00000531032 AKNAD1Q5T1N1 836 aa13.37□□□□□ -0.27
VPS28-214ENST00000531032 EEPD1Q7L9B9 569 aa13.37□□□□□ -0.27
VPS28-214ENST00000531032 SMC5Q8IY18 1101 aa13.37□□□□□ -0.27
VPS28-214ENST00000531032 TTC14Q96N46 770 aa13.37□□□□□ -0.27
VPS28-214ENST00000531032 COL25A1Q9BXS0 654 aaPredicted RBP13.37□□□□□ -0.27
VPS28-214ENST00000531032 SEZ6LQ9BYH1 1024 aa13.37□□□□□ -0.27
VPS28-214ENST00000531032 PPP1R12CQ9BZL4 782 aa13.37□□□□□ -0.27
VPS28-214ENST00000531032 LNPKQ9C0E8 428 aa13.37□□□□□ -0.27
VPS28-214ENST00000531032 AP5M1Q9H0R1 490 aa13.37□□□□□ -0.27
VPS28-214ENST00000531032 ADD3Q9UEY8 706 aaKnown RBP13.37□□□□□ -0.27
VPS28-214ENST00000531032 GRIN2DO15399 1336 aa13.37□□□□□ -0.27
VPS28-214ENST00000531032 VCANP13611 3396 aa13.37□□□□□ -0.27
VPS28-214ENST00000531032 FOSL2P15408 326 aa13.36□□□□□ -0.27
VPS28-214ENST00000531032 HAND2P61296 217 aa13.36□□□□□ -0.27
VPS28-214ENST00000531032 ZNF543Q08ER8 600 aa13.36□□□□□ -0.27
VPS28-214ENST00000531032 DUSP28Q4G0W2 176 aa13.36□□□□□ -0.27
VPS28-214ENST00000531032 TMEM63BQ5T3F8 832 aa13.36□□□□□ -0.27
VPS28-214ENST00000531032 PSRC1Q6PGN9 363 aaPredicted RBP13.36□□□□□ -0.27
VPS28-214ENST00000531032 MFSD6Q6ZSS7 791 aa13.36□□□□□ -0.27
VPS28-214ENST00000531032 KIAA1211Q6ZU35 1233 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms