RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 AHDC1Q5TGY3 1603 aaPredicted RBP21.8■■□□□ 1.08
PCF11-203ENST00000530304 MSL3Q8N5Y2 521 aaKnown RBP21.8■■□□□ 1.08
PCF11-203ENST00000530304 WDR66Q8TBY9 1149 aa21.8■■□□□ 1.08
PCF11-203ENST00000530304 AK8Q96MA6 479 aa21.8■■□□□ 1.08
PCF11-203ENST00000530304 TTYH3Q9C0H2 523 aa21.8■■□□□ 1.08
PCF11-203ENST00000530304 ZMYND12Q9H0C1 365 aa21.8■■□□□ 1.08
PCF11-203ENST00000530304 CPVLQ9H3G5 476 aa21.8■■□□□ 1.08
PCF11-203ENST00000530304 RASSF10A6NK89 507 aa21.79■■□□□ 1.08
PCF11-203ENST00000530304 KLRF2D3W0D1 207 aa21.79■■□□□ 1.08
PCF11-203ENST00000530304 CCNT1O60563 726 aaKnown RBP21.79■■□□□ 1.08
PCF11-203ENST00000530304 TUBBP07437 444 aa21.79■■□□□ 1.08
PCF11-203ENST00000530304 TRIM21P19474 475 aaKnown RBP21.79■■□□□ 1.08
PCF11-203ENST00000530304 PDE4DQ08499 809 aa21.79■■□□□ 1.08
PCF11-203ENST00000530304 GRIK5Q16478 980 aa21.79■■□□□ 1.08
PCF11-203ENST00000530304 LETM2Q2VYF4 491 aa21.79■■□□□ 1.08
PCF11-203ENST00000530304 ANKRD40Q6AI12 368 aa21.79■■□□□ 1.08
PCF11-203ENST00000530304 P2RX5Q93086 422 aa21.79■■□□□ 1.08
PCF11-203ENST00000530304 TRIM9Q9C026 710 aa21.79■■□□□ 1.08
PCF11-203ENST00000530304 BAG3O95817 575 aa21.79■■□□□ 1.08
PCF11-203ENST00000530304 KLK7P49862 253 aa21.79■■□□□ 1.08
PCF11-203ENST00000530304 KRT83P78385 493 aa21.79■■□□□ 1.08
PCF11-203ENST00000530304 EXOC4Q96A65 974 aa21.79■■□□□ 1.08
PCF11-203ENST00000530304 ZBTB9Q96C00 473 aa21.79■■□□□ 1.08
PCF11-203ENST00000530304 GBP3Q9H0R5 595 aa21.79■■□□□ 1.08
PCF11-203ENST00000530304 MAGEF1Q9HAY2 307 aa21.79■■□□□ 1.08
PCF11-203ENST00000530304 ZBTB22O15209 634 aa21.78■■□□□ 1.08
PCF11-203ENST00000530304 EIF3JO75822 258 aaKnown RBP21.78■■□□□ 1.08
PCF11-203ENST00000530304 ATP1A1P05023 1023 aaKnown RBP21.78■■□□□ 1.08
PCF11-203ENST00000530304 OR52Z1P0C646 297 aa21.78■■□□□ 1.08
PCF11-203ENST00000530304 CCNE1P24864 410 aa21.78■■□□□ 1.08
PCF11-203ENST00000530304 TBC1D8BQ0IIM8 1120 aa21.78■■□□□ 1.08
PCF11-203ENST00000530304 STK4Q13043 487 aa21.78■■□□□ 1.08
PCF11-203ENST00000530304 SLC51AQ86UW1 340 aa21.78■■□□□ 1.08
PCF11-203ENST00000530304 LZTS2Q9BRK4 669 aa21.78■■□□□ 1.08
PCF11-203ENST00000530304 NUP58Q9BVL2 599 aa21.78■■□□□ 1.08
PCF11-203ENST00000530304 ANKIB1Q9P2G1 1089 aa21.78■■□□□ 1.08
PCF11-203ENST00000530304 ZNF831Q5JPB2 1677 aa21.78■■□□□ 1.08
PCF11-203ENST00000530304 ZPR1O75312 459 aa21.78■■□□□ 1.08
PCF11-203ENST00000530304 RASA1P20936 1047 aa21.78■■□□□ 1.08
PCF11-203ENST00000530304 NAPAP54920 295 aa21.78■■□□□ 1.08
PCF11-203ENST00000530304 CASP8Q14790 479 aa21.78■■□□□ 1.08
PCF11-203ENST00000530304 ZNF662Q6ZS27 426 aa21.78■■□□□ 1.08
PCF11-203ENST00000530304 SAP30BPQ9UHR5 308 aaKnown RBP21.78■■□□□ 1.08
PCF11-203ENST00000530304 SAR1BQ9Y6B6 198 aa21.78■■□□□ 1.08
PCF11-203ENST00000530304 BICDL2A1A5D9 508 aa21.77■■□□□ 1.08
PCF11-203ENST00000530304 WDR93Q6P2C0 686 aa21.77■■□□□ 1.08
PCF11-203ENST00000530304 KIAA1328Q86T90 577 aa21.77■■□□□ 1.08
PCF11-203ENST00000530304 MAPKAPK5Q8IW41 473 aa21.77■■□□□ 1.08
PCF11-203ENST00000530304 CCDC47Q96A33 483 aaKnown RBP21.77■■□□□ 1.08
PCF11-203ENST00000530304 CNOT6LQ96LI5 555 aaKnown RBP21.77■■□□□ 1.08
PCF11-203ENST00000530304 C7orf25Q9BPX7 421 aa21.77■■□□□ 1.08
PCF11-203ENST00000530304 MYH1P12882 1939 aa21.77■■□□□ 1.08
PCF11-203ENST00000530304 N4BP1O75113 896 aaKnown RBP21.77■■□□□ 1.08
PCF11-203ENST00000530304 PPP4CP60510 307 aa21.77■■□□□ 1.08
PCF11-203ENST00000530304 GSTO1P78417 241 aa21.77■■□□□ 1.08
PCF11-203ENST00000530304 KRT25Q7Z3Z0 450 aa21.77■■□□□ 1.08
PCF11-203ENST00000530304 RETREG2Q8NC44 543 aa21.77■■□□□ 1.08
PCF11-203ENST00000530304 NHEJ1Q9H9Q4 299 aaPredicted RBP21.77■■□□□ 1.08
PCF11-203ENST00000530304 ZNHIT6Q9NWK9 470 aaKnown RBP21.77■■□□□ 1.08
PCF11-203ENST00000530304 PSD3Q9NYI0 1048 aa21.77■■□□□ 1.08
PCF11-203ENST00000530304 VPS18Q9P253 973 aa21.77■■□□□ 1.08
PCF11-203ENST00000530304 SMCO2A6NFE2 343 aa21.76■■□□□ 1.07
PCF11-203ENST00000530304 SRGAP2O75044 1071 aa21.76■■□□□ 1.07
PCF11-203ENST00000530304 FCER1AP12319 257 aa21.76■■□□□ 1.07
PCF11-203ENST00000530304 CYLC1P35663 651 aaPredicted RBP21.76■■□□□ 1.07
PCF11-203ENST00000530304 TECP42680 631 aa21.76■■□□□ 1.07
PCF11-203ENST00000530304 ASIC1P78348 528 aa21.76■■□□□ 1.07
PCF11-203ENST00000530304 NONOQ15233 471 aaKnown RBP eCLIP21.76■■□□□ 1.07
PCF11-203ENST00000530304 PAPD7Q5XG87 772 aaKnown RBP21.76■■□□□ 1.07
PCF11-203ENST00000530304 JAKMIP2Q96AA8 810 aa21.76■■□□□ 1.07
PCF11-203ENST00000530304 SPZ1Q9BXG8 430 aa21.76■■□□□ 1.07
PCF11-203ENST00000530304 KRT86O43790 486 aa21.76■■□□□ 1.07
PCF11-203ENST00000530304 RPS6KA4O75676 772 aa21.76■■□□□ 1.07
PCF11-203ENST00000530304 NUTM2BA6NNL0 878 aaPredicted RBP21.76■■□□□ 1.07
PCF11-203ENST00000530304 NUTM2EB1AL46 878 aaPredicted RBP21.76■■□□□ 1.07
PCF11-203ENST00000530304 ZBED6P86452 979 aa21.76■■□□□ 1.07
PCF11-203ENST00000530304 PTF1AQ7RTS3 328 aa21.76■■□□□ 1.07
PCF11-203ENST00000530304 FAM114A1Q8IWE2 563 aa21.76■■□□□ 1.07
PCF11-203ENST00000530304 MMS19Q96T76 1030 aa21.76■■□□□ 1.07
PCF11-203ENST00000530304 NOC4LQ9BVI4 516 aaKnown RBP21.76■■□□□ 1.07
PCF11-203ENST00000530304 LACRTQ9GZZ8 138 aa21.76■■□□□ 1.07
PCF11-203ENST00000530304 KDM4FA0A1W2PPD8 638 aa21.75■■□□□ 1.07
PCF11-203ENST00000530304 RCCD1A6NED2 376 aa21.75■■□□□ 1.07
PCF11-203ENST00000530304 MTIF2P46199 727 aaKnown RBP21.75■■□□□ 1.07
PCF11-203ENST00000530304 LMAN1P49257 510 aa21.75■■□□□ 1.07
PCF11-203ENST00000530304 MIIPQ5JXC2 388 aa21.75■■□□□ 1.07
PCF11-203ENST00000530304 NEK8Q86SG6 692 aa21.75■■□□□ 1.07
PCF11-203ENST00000530304 EHBP1Q8NDI1 1231 aa21.75■■□□□ 1.07
PCF11-203ENST00000530304 PCMTD1Q96MG8 357 aaPredicted RBP21.75■■□□□ 1.07
PCF11-203ENST00000530304 C6orf50Q9HD87 102 aa21.75■■□□□ 1.07
PCF11-203ENST00000530304 GNA11P29992 359 aa21.75■■□□□ 1.07
PCF11-203ENST00000530304 USP17L2Q6R6M4 530 aa21.75■■□□□ 1.07
PCF11-203ENST00000530304 CCDC170Q8IYT3 715 aa21.75■■□□□ 1.07
PCF11-203ENST00000530304 COL24A1Q17RW2 1714 aa21.74■■□□□ 1.07
PCF11-203ENST00000530304 EIF3CLB5ME19 914 aaKnown RBP21.74■■□□□ 1.07
PCF11-203ENST00000530304 GNPATO15228 680 aa21.74■■□□□ 1.07
PCF11-203ENST00000530304 USP14P54578 494 aa21.74■■□□□ 1.07
PCF11-203ENST00000530304 EYA3Q99504 573 aa21.74■■□□□ 1.07
PCF11-203ENST00000530304 EIF3CQ99613 913 aaKnown RBP21.74■■□□□ 1.07
PCF11-203ENST00000530304 MMTAG2Q9BU76 263 aaKnown RBP21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 139 ms