RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 ERVFC1P60507 584 aa4.55□□□□□ -1.68
CD44-229ENST00000528672 ZP2Q05996 745 aa4.55□□□□□ -1.68
CD44-229ENST00000528672 BBS9Q3SYG4 887 aa4.55□□□□□ -1.68
CD44-229ENST00000528672 RTP2Q5QGT7 225 aa4.55□□□□□ -1.68
CD44-229ENST00000528672 NOL9Q5SY16 702 aaKnown RBP4.55□□□□□ -1.68
CD44-229ENST00000528672 LCE4AQ5TA78 99 aa4.55□□□□□ -1.68
CD44-229ENST00000528672 GTF2IRD2BQ6EKJ0 949 aa4.55□□□□□ -1.68
CD44-229ENST00000528672 KCNT2Q6UVM3 1135 aa4.55□□□□□ -1.68
CD44-229ENST00000528672 GTF2IRD2Q86UP8 949 aa4.55□□□□□ -1.68
CD44-229ENST00000528672 TSPYL5Q86VY4 417 aaPredicted RBP4.55□□□□□ -1.68
CD44-229ENST00000528672 ST13P5Q8NFI4 369 aaPredicted RBP4.55□□□□□ -1.68
CD44-229ENST00000528672 PI4K2BQ8TCG2 481 aa4.55□□□□□ -1.68
CD44-229ENST00000528672 SMARCC1Q92922 1105 aaPredicted RBP4.55□□□□□ -1.68
CD44-229ENST00000528672 OSBP2Q969R2 916 aa4.55□□□□□ -1.68
CD44-229ENST00000528672 DHRS1Q96LJ7 313 aa4.55□□□□□ -1.68
CD44-229ENST00000528672 FCRL3Q96P31 734 aaPredicted RBP4.55□□□□□ -1.68
CD44-229ENST00000528672 IER2Q9BTL4 223 aa4.55□□□□□ -1.68
CD44-229ENST00000528672 MBNL3Q9NUK0 354 aaKnown RBP4.55□□□□□ -1.68
CD44-229ENST00000528672 AP5S1Q9NUS5 200 aa4.55□□□□□ -1.68
CD44-229ENST00000528672 LRP2BPQ9P2M1 347 aa4.55□□□□□ -1.68
CD44-229ENST00000528672 FBXL7Q9UJT9 491 aa4.55□□□□□ -1.68
CD44-229ENST00000528672 EMC9Q9Y3B6 208 aa4.55□□□□□ -1.68
CD44-229ENST00000528672 TRAF6Q9Y4K3 522 aa4.55□□□□□ -1.68
CD44-229ENST00000528672 TMEM82A0PJX8 343 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 SIGLEC6O43699 453 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 DLX3O60479 287 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 MSCO60682 206 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 RNASE1P07998 156 aaKnown RBP4.54□□□□□ -1.68
CD44-229ENST00000528672 SYPP08247 313 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 ENDOUP21128 410 aaKnown RBP4.54□□□□□ -1.68
CD44-229ENST00000528672 GDNFP39905 211 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 ECI1P42126 302 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 MASP1P48740 699 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 AMPD3Q01432 767 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 NCAPHQ15003 741 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 TCEA2Q15560 299 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 ANKRD39Q53RE8 183 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 RALGPS1Q5JS13 557 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 EEPD1Q7L9B9 569 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 CREG2Q8IUH2 290 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 CCDC103Q8IW40 242 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 TRIM59Q8IWR1 403 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 SYNPOQ8N3V7 929 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 ARHGEF39Q8N4T4 335 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 JMYQ8N9B5 988 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 TMEM145Q8NBT3 493 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 TMEM52Q8NDY8 209 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 APBA2Q99767 749 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 POLR3GLQ9BT43 218 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 DSCC1Q9BVC3 393 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 SLC12A9Q9BXP2 914 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 KRTAP4-11Q9BYQ6 195 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 RC3H2Q9HBD1 1191 aaKnown RBP4.54□□□□□ -1.68
CD44-229ENST00000528672 KLHL42Q9P2K6 505 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 PPARGC1AQ9UBK2 798 aaKnown RBP4.54□□□□□ -1.68
CD44-229ENST00000528672 CD2APQ9Y5K6 639 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 SLC12A7Q9Y666 1083 aa4.54□□□□□ -1.68
CD44-229ENST00000528672 DNAJC25-GNG10A0A024R161 153 aa4.53□□□□□ -1.68
CD44-229ENST00000528672 PPP1R11O60927 126 aaPredicted RBP4.53□□□□□ -1.68
CD44-229ENST00000528672 RAPGEF3O95398 923 aa4.53□□□□□ -1.68
CD44-229ENST00000528672 PAPLNO95428 1278 aa4.53□□□□□ -1.68
CD44-229ENST00000528672 ASMTLO95671 621 aa4.53□□□□□ -1.68
CD44-229ENST00000528672 C6orf222P0C671 652 aaPredicted RBP4.53□□□□□ -1.68
CD44-229ENST00000528672 RBM10P98175 930 aaKnown RBP4.53□□□□□ -1.68
CD44-229ENST00000528672 SCRN1Q12765 414 aa4.53□□□□□ -1.68
CD44-229ENST00000528672 INF2Q27J81 1249 aa4.53□□□□□ -1.68
CD44-229ENST00000528672 CPNE8Q86YQ8 564 aa4.53□□□□□ -1.68
CD44-229ENST00000528672 RPUSD2Q8IZ73 545 aaKnown RBP4.53□□□□□ -1.68
CD44-229ENST00000528672 DAGLBQ8NCG7 672 aa4.53□□□□□ -1.68
CD44-229ENST00000528672 KREMEN2Q8NCW0 462 aa4.53□□□□□ -1.68
CD44-229ENST00000528672 BVESQ8NE79 360 aa4.53□□□□□ -1.68
CD44-229ENST00000528672 SYTL5Q8TDW5 730 aaPredicted RBP4.53□□□□□ -1.68
CD44-229ENST00000528672 ZNF669Q96BR6 464 aaPredicted RBP4.53□□□□□ -1.68
CD44-229ENST00000528672 ASCC2Q9H1I8 757 aaPredicted RBP4.53□□□□□ -1.68
CD44-229ENST00000528672 DDX56Q9NY93 547 aaKnown RBP4.53□□□□□ -1.68
CD44-229ENST00000528672 WHRNQ9P202 907 aa4.53□□□□□ -1.68
CD44-229ENST00000528672 FBLN5Q9UBX5 448 aa4.53□□□□□ -1.68
CD44-229ENST00000528672 ADAMTS6Q9UKP5 1117 aa4.53□□□□□ -1.68
CD44-229ENST00000528672 THBDP07204 575 aa4.52□□□□□ -1.69
CD44-229ENST00000528672 GSTM1P09488 218 aa4.52□□□□□ -1.69
CD44-229ENST00000528672 ITGA4P13612 1032 aa4.52□□□□□ -1.69
CD44-229ENST00000528672 SDSP20132 328 aa4.52□□□□□ -1.69
CD44-229ENST00000528672 TRHRP34981 398 aaPredicted RBP4.52□□□□□ -1.69
CD44-229ENST00000528672 TEKQ02763 1124 aa4.52□□□□□ -1.69
CD44-229ENST00000528672 TIGD5Q53EQ6 642 aa4.52□□□□□ -1.69
CD44-229ENST00000528672 FGD2Q7Z6J4 655 aa4.52□□□□□ -1.69
CD44-229ENST00000528672 ZNF655Q8N720 491 aaPredicted RBP4.52□□□□□ -1.69
CD44-229ENST00000528672 ZBTB38Q8NAP3 1195 aaPredicted RBP4.52□□□□□ -1.69
CD44-229ENST00000528672 ZSWIM2Q8NEG5 633 aa4.52□□□□□ -1.69
CD44-229ENST00000528672 FRS2Q8WU20 508 aa4.52□□□□□ -1.69
CD44-229ENST00000528672 UBE2Q2Q8WVN8 375 aa4.52□□□□□ -1.69
CD44-229ENST00000528672 KISS1RQ969F8 398 aaPredicted RBP4.52□□□□□ -1.69
CD44-229ENST00000528672 C1orf159Q96HA4 380 aa4.52□□□□□ -1.69
CD44-229ENST00000528672 ALPK1Q96QP1 1244 aa4.52□□□□□ -1.69
CD44-229ENST00000528672 CARS2Q9HA77 564 aaKnown RBP4.52□□□□□ -1.69
CD44-229ENST00000528672 CLEC1BQ9P126 229 aa4.52□□□□□ -1.69
CD44-229ENST00000528672 FHOD1Q9Y613 1164 aa4.52□□□□□ -1.69
CD44-229ENST00000528672 PABPC1P11940 636 aaKnown RBP4.51□□□□□ -1.69
CD44-229ENST00000528672 VAV1P15498 845 aa4.51□□□□□ -1.69
CD44-229ENST00000528672 RPL10P27635 214 aaKnown RBP4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms