RNA–Protein interactions for RNA: ENST00000527680.1

TRAPPC4-208, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 569 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-208ENST00000527680 UPF3AQ9H1J1 476 aaKnown RBP26.39■■□□□ 1.82
TRAPPC4-208ENST00000527680 GPCPD1Q9NPB8 672 aa26.39■■□□□ 1.82
TRAPPC4-208ENST00000527680 BEX3Q00994 111 aa26.38■■□□□ 1.81
TRAPPC4-208ENST00000527680 AAMPQ13685 434 aa26.38■■□□□ 1.81
TRAPPC4-208ENST00000527680 MFSD6Q6ZSS7 791 aa26.38■■□□□ 1.81
TRAPPC4-208ENST00000527680 EEPD1Q7L9B9 569 aa26.38■■□□□ 1.81
TRAPPC4-208ENST00000527680 GUCD1Q96NT3 240 aa26.38■■□□□ 1.81
TRAPPC4-208ENST00000527680 KATNBL1Q9H079 304 aa26.38■■□□□ 1.81
TRAPPC4-208ENST00000527680 AP5M1Q9H0R1 490 aa26.38■■□□□ 1.81
TRAPPC4-208ENST00000527680 CYP39A1Q9NYL5 469 aa26.38■■□□□ 1.81
TRAPPC4-208ENST00000527680 FRMPD2Q68DX3 1309 aaPredicted RBP26.38■■□□□ 1.81
TRAPPC4-208ENST00000527680 A0A0U1RQG5 324 aaPredicted RBP26.37■■□□□ 1.81
TRAPPC4-208ENST00000527680 C11orf97A0A1B0GVM6 126 aaPredicted RBP26.37■■□□□ 1.81
TRAPPC4-208ENST00000527680 ARVCFO00192 962 aa26.37■■□□□ 1.81
TRAPPC4-208ENST00000527680 TIMP1P01033 207 aa26.37■■□□□ 1.81
TRAPPC4-208ENST00000527680 ICAM1P05362 532 aa26.37■■□□□ 1.81
TRAPPC4-208ENST00000527680 NOVP48745 357 aa26.37■■□□□ 1.81
TRAPPC4-208ENST00000527680 EPHB4P54760 987 aa26.37■■□□□ 1.81
TRAPPC4-208ENST00000527680 MFAP1P55081 439 aaKnown RBP26.37■■□□□ 1.81
TRAPPC4-208ENST00000527680 ZNF589Q86UQ0 364 aaPredicted RBP26.37■■□□□ 1.81
TRAPPC4-208ENST00000527680 CCDC171Q6TFL3 1326 aa26.37■■□□□ 1.81
TRAPPC4-208ENST00000527680 DYNC1LI2O43237 492 aaPredicted RBP26.36■■□□□ 1.81
TRAPPC4-208ENST00000527680 CDK7P50613 346 aa26.36■■□□□ 1.81
TRAPPC4-208ENST00000527680 SMAD3P84022 425 aaKnown RBP26.36■■□□□ 1.81
TRAPPC4-208ENST00000527680 SYDE2Q5VT97 1194 aa26.36■■□□□ 1.81
TRAPPC4-208ENST00000527680 SEMA6BQ9H3T3 888 aa26.36■■□□□ 1.81
TRAPPC4-208ENST00000527680 TCP11L1Q9NUJ3 509 aa26.36■■□□□ 1.81
TRAPPC4-208ENST00000527680 DDX49Q9Y6V7 483 aaKnown RBP26.36■■□□□ 1.81
TRAPPC4-208ENST00000527680 TLR3O15455 904 aaKnown RBP26.35■■□□□ 1.81
TRAPPC4-208ENST00000527680 AKNAD1Q5T1N1 836 aa26.35■■□□□ 1.81
TRAPPC4-208ENST00000527680 RANBP17Q9H2T7 1088 aaKnown RBP26.35■■□□□ 1.81
TRAPPC4-208ENST00000527680 LAMA2P24043 3122 aaKnown RBP26.34■■□□□ 1.81
TRAPPC4-208ENST00000527680 SDSP20132 328 aa26.34■■□□□ 1.81
TRAPPC4-208ENST00000527680 BAATQ14032 418 aaPredicted RBP26.34■■□□□ 1.81
TRAPPC4-208ENST00000527680 IQSEC1Q6DN90 963 aa26.34■■□□□ 1.81
TRAPPC4-208ENST00000527680 BTNL9Q6UXG8 535 aa26.34■■□□□ 1.81
TRAPPC4-208ENST00000527680 KIAA1211Q6ZU35 1233 aa26.34■■□□□ 1.81
TRAPPC4-208ENST00000527680 TLK2Q86UE8 772 aa26.34■■□□□ 1.81
TRAPPC4-208ENST00000527680 TTC14Q96N46 770 aa26.34■■□□□ 1.81
TRAPPC4-208ENST00000527680 PURBQ96QR8 312 aaKnown RBP26.34■■□□□ 1.81
TRAPPC4-208ENST00000527680 PDGFCQ9NRA1 345 aa26.34■■□□□ 1.81
TRAPPC4-208ENST00000527680 PTPDC1A2A3K4 754 aa26.33■■□□□ 1.81
TRAPPC4-208ENST00000527680 ZEB2O60315 1214 aa26.33■■□□□ 1.81
TRAPPC4-208ENST00000527680 FSCN1Q16658 493 aaKnown RBP26.33■■□□□ 1.81
TRAPPC4-208ENST00000527680 CXCL17Q6UXB2 119 aa26.33■■□□□ 1.81
TRAPPC4-208ENST00000527680 CHD1LQ86WJ1 897 aa26.33■■□□□ 1.81
TRAPPC4-208ENST00000527680 FBXO16Q8IX29 292 aaPredicted RBP26.33■■□□□ 1.81
TRAPPC4-208ENST00000527680 SMC5Q8IY18 1101 aa26.33■■□□□ 1.81
TRAPPC4-208ENST00000527680 CDX2Q99626 313 aaPredicted RBP26.33■■□□□ 1.81
TRAPPC4-208ENST00000527680 RNF41Q9H4P4 317 aaPredicted RBP26.33■■□□□ 1.81
TRAPPC4-208ENST00000527680 ADD3Q9UEY8 706 aaKnown RBP26.33■■□□□ 1.81
TRAPPC4-208ENST00000527680 TBX21Q9UL17 535 aa26.33■■□□□ 1.81
TRAPPC4-208ENST00000527680 GNEQ9Y223 722 aaKnown RBP26.33■■□□□ 1.81
TRAPPC4-208ENST00000527680 ZNF213O14771 459 aa26.32■■□□□ 1.8
TRAPPC4-208ENST00000527680 CTAGE5O15320 804 aa26.32■■□□□ 1.8
TRAPPC4-208ENST00000527680 PCP11498 1178 aaKnown RBP26.32■■□□□ 1.8
TRAPPC4-208ENST00000527680 SMPD1P17405 629 aa26.32■■□□□ 1.8
TRAPPC4-208ENST00000527680 MFSD5Q6N075 450 aa26.32■■□□□ 1.8
TRAPPC4-208ENST00000527680 ZMYM6O95789 1325 aa26.32■■□□□ 1.8
TRAPPC4-208ENST00000527680 CABYRO75952 493 aa26.31■■□□□ 1.8
TRAPPC4-208ENST00000527680 PDHBP11177 359 aa26.31■■□□□ 1.8
TRAPPC4-208ENST00000527680 PPIGQ13427 754 aaKnown RBP eCLIP26.31■■□□□ 1.8
TRAPPC4-208ENST00000527680 CWC27Q6UX04 472 aaKnown RBP26.31■■□□□ 1.8
TRAPPC4-208ENST00000527680 PLEKHM2Q8IWE5 1019 aa26.31■■□□□ 1.8
TRAPPC4-208ENST00000527680 TMEM199Q8N511 208 aa26.31■■□□□ 1.8
TRAPPC4-208ENST00000527680 ESR2Q92731 530 aa26.31■■□□□ 1.8
TRAPPC4-208ENST00000527680 PPP1R12CQ9BZL4 782 aa26.31■■□□□ 1.8
TRAPPC4-208ENST00000527680 ASTN1O14525 1302 aa26.31■■□□□ 1.8
TRAPPC4-208ENST00000527680 HSFX4A0A1B0GTS1 333 aaPredicted RBP26.3■■□□□ 1.8
TRAPPC4-208ENST00000527680 HSFX3A0A1B0GWH4 333 aaPredicted RBP26.3■■□□□ 1.8
TRAPPC4-208ENST00000527680 IGHDP01880 384 aa26.3■■□□□ 1.8
TRAPPC4-208ENST00000527680 CALML3P27482 149 aa26.3■■□□□ 1.8
TRAPPC4-208ENST00000527680 NKX3-2P78367 333 aa26.3■■□□□ 1.8
TRAPPC4-208ENST00000527680 TAPT1Q6NXT6 567 aa26.3■■□□□ 1.8
TRAPPC4-208ENST00000527680 ZKSCAN3Q9BRR0 538 aa26.3■■□□□ 1.8
TRAPPC4-208ENST00000527680 VTA1Q9NP79 307 aa26.3■■□□□ 1.8
TRAPPC4-208ENST00000527680 DIAPH3Q9NSV4 1193 aa26.3■■□□□ 1.8
TRAPPC4-208ENST00000527680 PNMA2Q9UL42 364 aa26.3■■□□□ 1.8
TRAPPC4-208ENST00000527680 NFIBO00712 420 aa26.29■■□□□ 1.8
TRAPPC4-208ENST00000527680 PTGS1P23219 599 aa26.29■■□□□ 1.8
TRAPPC4-208ENST00000527680 ITGA7Q13683 1181 aa26.29■■□□□ 1.8
TRAPPC4-208ENST00000527680 TBC1D10CQ8IV04 446 aa26.29■■□□□ 1.8
TRAPPC4-208ENST00000527680 FAM126BQ8IXS8 530 aa26.29■■□□□ 1.8
TRAPPC4-208ENST00000527680 Q9Y3F1 56 aa26.29■■□□□ 1.8
TRAPPC4-208ENST00000527680 ALDH5A1P51649 535 aaPredicted RBP26.28■■□□□ 1.8
TRAPPC4-208ENST00000527680 NUCB1Q02818 461 aa26.28■■□□□ 1.8
TRAPPC4-208ENST00000527680 ZNF543Q08ER8 600 aa26.28■■□□□ 1.8
TRAPPC4-208ENST00000527680 RNF207Q6ZRF8 634 aa26.28■■□□□ 1.8
TRAPPC4-208ENST00000527680 BUD13Q9BRD0 619 aaKnown RBP eCLIP26.28■■□□□ 1.8
TRAPPC4-208ENST00000527680 TTYH1Q9H313 450 aaPredicted RBP26.28■■□□□ 1.8
TRAPPC4-208ENST00000527680 CSF2RAP15509 400 aa26.27■■□□□ 1.8
TRAPPC4-208ENST00000527680 TMEM63BQ5T3F8 832 aa26.27■■□□□ 1.8
TRAPPC4-208ENST00000527680 EXOC6Q8TAG9 804 aa26.27■■□□□ 1.8
TRAPPC4-208ENST00000527680 MYLIPQ8WY64 445 aa26.27■■□□□ 1.8
TRAPPC4-208ENST00000527680 MPHOSPH6Q99547 160 aaKnown RBP26.27■■□□□ 1.8
TRAPPC4-208ENST00000527680 WDR11Q9BZH6 1224 aa26.27■■□□□ 1.8
TRAPPC4-208ENST00000527680 OSBPL3Q9H4L5 887 aa26.27■■□□□ 1.8
TRAPPC4-208ENST00000527680 GOLGA8HP0CJ92 632 aa26.26■■□□□ 1.79
TRAPPC4-208ENST00000527680 ACRP10323 421 aa26.26■■□□□ 1.79
TRAPPC4-208ENST00000527680 CYP2C18P33260 490 aa26.26■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms