RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 MSRB2Q9Y3D2 182 aa7.37□□□□□ -1.23
CD44-223ENST00000526553 TRBV23OR9-2A0A075B6M9 112 aa7.36□□□□□ -1.23
CD44-223ENST00000526553 AGRPO00253 132 aa7.36□□□□□ -1.23
CD44-223ENST00000526553 U2SURPO15042 1029 aaKnown RBP7.36□□□□□ -1.23
CD44-223ENST00000526553 ITGAVP06756 1048 aa7.36□□□□□ -1.23
CD44-223ENST00000526553 CORO7P57737 925 aa7.36□□□□□ -1.23
CD44-223ENST00000526553 RBL2Q08999 1139 aa7.36□□□□□ -1.23
CD44-223ENST00000526553 LAPTM5Q13571 262 aa7.36□□□□□ -1.23
CD44-223ENST00000526553 JAMLQ86YT9 394 aa7.36□□□□□ -1.23
CD44-223ENST00000526553 SREK1Q8WXA9 508 aaKnown RBP7.36□□□□□ -1.23
CD44-223ENST00000526553 COPS5Q92905 334 aa7.36□□□□□ -1.23
CD44-223ENST00000526553 NSUN3Q9H649 340 aaKnown RBP7.36□□□□□ -1.23
CD44-223ENST00000526553 CYP26B1Q9NR63 512 aa7.36□□□□□ -1.23
CD44-223ENST00000526553 LRP2BPQ9P2M1 347 aa7.36□□□□□ -1.23
CD44-223ENST00000526553 IMPACTQ9P2X3 320 aa7.36□□□□□ -1.23
CD44-223ENST00000526553 FARP2O94887 1054 aaPredicted RBP7.35□□□□□ -1.23
CD44-223ENST00000526553 RBM10P98175 930 aaKnown RBP7.35□□□□□ -1.23
CD44-223ENST00000526553 SCRN1Q12765 414 aa7.35□□□□□ -1.23
CD44-223ENST00000526553 NUP43Q8NFH3 380 aa7.35□□□□□ -1.23
CD44-223ENST00000526553 ST13P5Q8NFI4 369 aaPredicted RBP7.35□□□□□ -1.23
CD44-223ENST00000526553 BTN2A2Q8WVV5 523 aa7.35□□□□□ -1.23
CD44-223ENST00000526553 LGR4Q9BXB1 951 aa7.35□□□□□ -1.23
CD44-223ENST00000526553 EPB41L4BQ9H329 900 aa7.35□□□□□ -1.23
CD44-223ENST00000526553 PPP1R1BQ9UD71 204 aaPredicted RBP7.35□□□□□ -1.23
CD44-223ENST00000526553 TBX1O43435 398 aa7.34□□□□□ -1.23
CD44-223ENST00000526553 PRKCAP17252 672 aa7.34□□□□□ -1.23
CD44-223ENST00000526553 PAMP19021 973 aa7.34□□□□□ -1.23
CD44-223ENST00000526553 HOXC12P31275 282 aa7.34□□□□□ -1.23
CD44-223ENST00000526553 L1CAMP32004 1257 aa7.34□□□□□ -1.23
CD44-223ENST00000526553 ARL4AP40617 200 aa7.34□□□□□ -1.23
CD44-223ENST00000526553 GALK1P51570 392 aa7.34□□□□□ -1.23
CD44-223ENST00000526553 ERVFRD-1P60508 538 aa7.34□□□□□ -1.23
CD44-223ENST00000526553 MESP2Q0VG99 397 aa7.34□□□□□ -1.23
CD44-223ENST00000526553 ZNF669Q96BR6 464 aaPredicted RBP7.34□□□□□ -1.23
CD44-223ENST00000526553 SGSM3Q96HU1 749 aa7.34□□□□□ -1.23
CD44-223ENST00000526553 DIRC2Q96SL1 478 aa7.34□□□□□ -1.23
CD44-223ENST00000526553 SIRPGQ9P1W8 387 aa7.34□□□□□ -1.23
CD44-223ENST00000526553 OR14I1A6ND48 311 aa7.33□□□□□ -1.24
CD44-223ENST00000526553 CAPNS1P04632 268 aa7.33□□□□□ -1.24
CD44-223ENST00000526553 SCG5P05408 212 aa7.33□□□□□ -1.24
CD44-223ENST00000526553 KIR3DS1Q14943 382 aa7.33□□□□□ -1.24
CD44-223ENST00000526553 ADGRF1Q5T601 910 aa7.33□□□□□ -1.24
CD44-223ENST00000526553 SIRT2Q8IXJ6 389 aa7.33□□□□□ -1.24
CD44-223ENST00000526553 FBXO15Q8NCQ5 510 aaPredicted RBP7.33□□□□□ -1.24
CD44-223ENST00000526553 NLGN2Q8NFZ4 835 aa7.33□□□□□ -1.24
CD44-223ENST00000526553 FAM84AQ96KN4 292 aa7.33□□□□□ -1.24
CD44-223ENST00000526553 CCDC140Q96MF4 163 aa7.33□□□□□ -1.24
CD44-223ENST00000526553 TNFRSF12AQ9NP84 129 aa7.33□□□□□ -1.24
CD44-223ENST00000526553 DCP1AQ9NPI6 582 aaPredicted RBP7.33□□□□□ -1.24
CD44-223ENST00000526553 NPHP3-ACAD11A0A0J9YXS1 232 aa7.32□□□□□ -1.24
CD44-223ENST00000526553 A0A1W2PQ27 194 aa7.32□□□□□ -1.24
CD44-223ENST00000526553 A0A1W2PQ64 194 aa7.32□□□□□ -1.24
CD44-223ENST00000526553 A0A1W2PQC6 194 aa7.32□□□□□ -1.24
CD44-223ENST00000526553 A0A1W2PQD8 194 aa7.32□□□□□ -1.24
CD44-223ENST00000526553 IQCA1LA6NCM1 817 aa7.32□□□□□ -1.24
CD44-223ENST00000526553 HRKO00198 91 aa7.32□□□□□ -1.24
CD44-223ENST00000526553 THBDP07204 575 aa7.32□□□□□ -1.24
CD44-223ENST00000526553 PDE6BP35913 854 aa7.32□□□□□ -1.24
CD44-223ENST00000526553 CYP4F8P98187 520 aa7.32□□□□□ -1.24
CD44-223ENST00000526553 MVKQ03426 396 aa7.32□□□□□ -1.24
CD44-223ENST00000526553 CYP4F3Q08477 520 aa7.32□□□□□ -1.24
CD44-223ENST00000526553 SERINC3Q13530 473 aa7.32□□□□□ -1.24
CD44-223ENST00000526553 SOGA3Q5TF21 947 aa7.32□□□□□ -1.24
CD44-223ENST00000526553 NPLOC4Q8TAT6 608 aa7.32□□□□□ -1.24
CD44-223ENST00000526553 MMP19Q99542 508 aa7.32□□□□□ -1.24
CD44-223ENST00000526553 CCDC113Q9H0I3 377 aa7.32□□□□□ -1.24
CD44-223ENST00000526553 ZNF552Q9H707 407 aaPredicted RBP7.32□□□□□ -1.24
CD44-223ENST00000526553 A0A1W2PQU0 124 aa7.31□□□□□ -1.24
CD44-223ENST00000526553 PDPK1O15530 556 aa7.31□□□□□ -1.24
CD44-223ENST00000526553 CPP00450 1065 aa7.31□□□□□ -1.24
CD44-223ENST00000526553 SNRPB2P08579 225 aaKnown RBP7.31□□□□□ -1.24
CD44-223ENST00000526553 PLS3P13797 630 aa7.31□□□□□ -1.24
CD44-223ENST00000526553 PPP2R2AP63151 447 aa7.31□□□□□ -1.24
CD44-223ENST00000526553 RASGRF1Q13972 1273 aa7.31□□□□□ -1.24
CD44-223ENST00000526553 BHLHE22Q8NFJ8 381 aaPredicted RBP7.31□□□□□ -1.24
CD44-223ENST00000526553 PDLIM7Q9NR12 457 aa7.31□□□□□ -1.24
CD44-223ENST00000526553 CLEC1BQ9P126 229 aa7.31□□□□□ -1.24
CD44-223ENST00000526553 PEX10O60683 326 aa7.3□□□□□ -1.24
CD44-223ENST00000526553 MSL3P1P0C860 447 aa7.3□□□□□ -1.24
CD44-223ENST00000526553 GFRA1P56159 465 aa7.3□□□□□ -1.24
CD44-223ENST00000526553 TESK1Q15569 626 aa7.3□□□□□ -1.24
CD44-223ENST00000526553 ZNF648Q5T619 568 aaPredicted RBP7.3□□□□□ -1.24
CD44-223ENST00000526553 E4F1Q66K89 784 aaPredicted RBP7.3□□□□□ -1.24
CD44-223ENST00000526553 LRP10Q7Z4F1 713 aa7.3□□□□□ -1.24
CD44-223ENST00000526553 CPNE8Q86YQ8 564 aa7.3□□□□□ -1.24
CD44-223ENST00000526553 FRS2Q8WU20 508 aa7.3□□□□□ -1.24
CD44-223ENST00000526553 SLC26A8Q96RN1 970 aa7.3□□□□□ -1.24
CD44-223ENST00000526553 PPP1R16BQ96T49 567 aa7.3□□□□□ -1.24
CD44-223ENST00000526553 SLC38A3Q99624 504 aa7.3□□□□□ -1.24
CD44-223ENST00000526553 GPRC5CQ9NQ84 441 aa7.3□□□□□ -1.24
CD44-223ENST00000526553 ABLIM1O14639 778 aa7.29□□□□□ -1.24
CD44-223ENST00000526553 SRGAP3O43295 1099 aa7.29□□□□□ -1.24
CD44-223ENST00000526553 MPOP05164 745 aa7.29□□□□□ -1.24
CD44-223ENST00000526553 YBX1P67809 324 aaKnown RBP7.29□□□□□ -1.24
CD44-223ENST00000526553 HSP90AA2PQ14568 343 aaPredicted RBP7.29□□□□□ -1.24
CD44-223ENST00000526553 ACBD5Q5T8D3 534 aaPredicted RBP7.29□□□□□ -1.24
CD44-223ENST00000526553 IQCEQ6IPM2 695 aa7.29□□□□□ -1.24
CD44-223ENST00000526553 ZNF605Q86T29 641 aa7.29□□□□□ -1.24
CD44-223ENST00000526553 LRRC47Q8N1G4 583 aaKnown RBP7.29□□□□□ -1.24
CD44-223ENST00000526553 C7orf72A4D263 438 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms