RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 YBX2Q9Y2T7 364 aaKnown RBP17.01■□□□□ 0.31
CPSF1-201ENST00000526271 TET1Q8NFU7 2136 aa17■□□□□ 0.31
CPSF1-201ENST00000526271 MCCP23508 829 aa17■□□□□ 0.31
CPSF1-201ENST00000526271 VPS53Q5VIR6 699 aa17■□□□□ 0.31
CPSF1-201ENST00000526271 KCTD1Q719H9 257 aa17■□□□□ 0.31
CPSF1-201ENST00000526271 PCSK9Q8NBP7 692 aaKnown RBP17■□□□□ 0.31
CPSF1-201ENST00000526271 GMCL1Q96IK5 515 aa17■□□□□ 0.31
CPSF1-201ENST00000526271 PRDM12Q9H4Q4 367 aa17■□□□□ 0.31
CPSF1-201ENST00000526271 ACAD9Q9H845 621 aa17■□□□□ 0.31
CPSF1-201ENST00000526271 FBXO40Q9UH90 709 aa17■□□□□ 0.31
CPSF1-201ENST00000526271 PTPRSQ13332 1948 aa17■□□□□ 0.31
CPSF1-201ENST00000526271 SCN10AQ9Y5Y9 1956 aa16.99■□□□□ 0.31
CPSF1-201ENST00000526271 ZFYP08048 801 aaPredicted RBP16.99■□□□□ 0.31
CPSF1-201ENST00000526271 PSMC6P62333 389 aa16.99■□□□□ 0.31
CPSF1-201ENST00000526271 CTDSPL2Q05D32 466 aa16.99■□□□□ 0.31
CPSF1-201ENST00000526271 PPIGQ13427 754 aaKnown RBP eCLIP16.99■□□□□ 0.319e-11■■■□□ 17.1
CPSF1-201ENST00000526271 TTBK2Q6IQ55 1244 aa16.99■□□□□ 0.31
CPSF1-201ENST00000526271 STAG1Q8WVM7 1258 aa16.99■□□□□ 0.31
CPSF1-201ENST00000526271 TRPV6Q9H1D0 765 aa16.99■□□□□ 0.31
CPSF1-201ENST00000526271 PRR12Q9ULL5 1215 aa16.99■□□□□ 0.31
CPSF1-201ENST00000526271 PLA2G6O60733 806 aa16.98■□□□□ 0.31
CPSF1-201ENST00000526271 APPP05067 770 aa16.98■□□□□ 0.31
CPSF1-201ENST00000526271 TSPY3P0CV98 308 aa16.98■□□□□ 0.31
CPSF1-201ENST00000526271 TSPY8P0CW00 308 aa16.98■□□□□ 0.31
CPSF1-201ENST00000526271 GNAT2P19087 354 aa16.98■□□□□ 0.31
CPSF1-201ENST00000526271 STAT2P52630 851 aa16.98■□□□□ 0.31
CPSF1-201ENST00000526271 TNFAIP2Q03169 654 aa16.98■□□□□ 0.31
CPSF1-201ENST00000526271 FBXO16Q8IX29 292 aaPredicted RBP16.98■□□□□ 0.31
CPSF1-201ENST00000526271 MORC4Q8TE76 937 aa16.98■□□□□ 0.31
CPSF1-201ENST00000526271 HERVK_113Q902F9 699 aa16.98■□□□□ 0.31
CPSF1-201ENST00000526271 TRERF1Q96PN7 1200 aa16.98■□□□□ 0.31
CPSF1-201ENST00000526271 NOC4LQ9BVI4 516 aaKnown RBP16.98■□□□□ 0.31
CPSF1-201ENST00000526271 IL23AQ9NPF7 189 aa16.98■□□□□ 0.31
CPSF1-201ENST00000526271 CYP39A1Q9NYL5 469 aa16.98■□□□□ 0.31
CPSF1-201ENST00000526271 MROH7Q68CQ1 1323 aa16.97■□□□□ 0.31
CPSF1-201ENST00000526271 PRRC2BQ5JSZ5 2229 aaKnown RBP16.97■□□□□ 0.31
CPSF1-201ENST00000526271 B4GALT4O60513 344 aa16.97■□□□□ 0.31
CPSF1-201ENST00000526271 FSCN1Q16658 493 aaKnown RBP16.97■□□□□ 0.31
CPSF1-201ENST00000526271 CCDC174Q6PII3 467 aa16.97■□□□□ 0.31
CPSF1-201ENST00000526271 EEPD1Q7L9B9 569 aa16.97■□□□□ 0.31
CPSF1-201ENST00000526271 TLK2Q86UE8 772 aa16.97■□□□□ 0.31
CPSF1-201ENST00000526271 PPP1R13LQ8WUF5 828 aa16.97■□□□□ 0.31
CPSF1-201ENST00000526271 TCF20Q9UGU0 1960 aaKnown RBP16.97■□□□□ 0.31
CPSF1-201ENST00000526271 TTC41PQ6P2S7 1318 aa16.96■□□□□ 0.31
CPSF1-201ENST00000526271 FGRP09769 529 aa16.96■□□□□ 0.31
CPSF1-201ENST00000526271 ALAS1P13196 640 aa16.96■□□□□ 0.31
CPSF1-201ENST00000526271 MYOGP15173 224 aa16.96■□□□□ 0.31
CPSF1-201ENST00000526271 ITGA7Q13683 1181 aa16.96■□□□□ 0.31
CPSF1-201ENST00000526271 VTI1AQ96AJ9 217 aa16.96■□□□□ 0.31
CPSF1-201ENST00000526271 NKX2-4Q9H2Z4 354 aa16.96■□□□□ 0.31
CPSF1-201ENST00000526271 NFIBO00712 420 aa16.95■□□□□ 0.3
CPSF1-201ENST00000526271 DYNC1LI2O43237 492 aaPredicted RBP16.95■□□□□ 0.3
CPSF1-201ENST00000526271 SLC16A2P36021 539 aa16.95■□□□□ 0.3
CPSF1-201ENST00000526271 SLC1A4P43007 532 aa16.95■□□□□ 0.3
CPSF1-201ENST00000526271 RABGGTBP53611 331 aa16.95■□□□□ 0.3
CPSF1-201ENST00000526271 CCL23P55773 120 aa16.95■□□□□ 0.3
CPSF1-201ENST00000526271 TJAP1Q5JTD0 557 aa16.95■□□□□ 0.3
CPSF1-201ENST00000526271 RCSD1Q6JBY9 416 aa16.95■□□□□ 0.3
CPSF1-201ENST00000526271 FAM160B2Q86V87 743 aa16.95■□□□□ 0.3
CPSF1-201ENST00000526271 TMEM199Q8N511 208 aa16.95■□□□□ 0.3
CPSF1-201ENST00000526271 NAPBQ9H115 298 aa16.95■□□□□ 0.3
CPSF1-201ENST00000526271 CHMP4BQ9H444 224 aaKnown RBP16.95■□□□□ 0.3
CPSF1-201ENST00000526271 TANC1Q9C0D5 1861 aa16.95■□□□□ 0.3
CPSF1-201ENST00000526271 ARHGEF15O94989 841 aa16.94■□□□□ 0.3
CPSF1-201ENST00000526271 FDX1P10109 184 aa16.94■□□□□ 0.3
CPSF1-201ENST00000526271 PDE4BQ07343 736 aa16.94■□□□□ 0.3
CPSF1-201ENST00000526271 PSRC1Q6PGN9 363 aaPredicted RBP16.94■□□□□ 0.3
CPSF1-201ENST00000526271 OTOP2Q7RTS6 562 aa16.94■□□□□ 0.3
CPSF1-201ENST00000526271 CHURC1Q8WUH1 139 aa16.94■□□□□ 0.3
CPSF1-201ENST00000526271 CLEC4DQ8WXI8 215 aa16.94■□□□□ 0.3
CPSF1-201ENST00000526271 PPM1EQ8WY54 764 aa16.94■□□□□ 0.3
CPSF1-201ENST00000526271 SCLYQ96I15 445 aa16.94■□□□□ 0.3
CPSF1-201ENST00000526271 YTHDC1Q96MU7 727 aaKnown RBP16.94■□□□□ 0.3
CPSF1-201ENST00000526271 FSD1Q9BTV5 496 aa16.94■□□□□ 0.3
CPSF1-201ENST00000526271 RANBP17Q9H2T7 1088 aaKnown RBP16.94■□□□□ 0.3
CPSF1-201ENST00000526271 HIPK3Q9H422 1215 aa16.94■□□□□ 0.3
CPSF1-201ENST00000526271 SPC25Q9HBM1 224 aa16.94■□□□□ 0.3
CPSF1-201ENST00000526271 RAPGEFL1Q9UHV5 662 aa16.94■□□□□ 0.3
CPSF1-201ENST00000526271 ANAPC4Q9UJX5 808 aa16.94■□□□□ 0.3
CPSF1-201ENST00000526271 CTDP1Q9Y5B0 961 aaPredicted RBP16.94■□□□□ 0.3
CPSF1-201ENST00000526271 TRIP12Q14669 1992 aaPredicted RBP16.94■□□□□ 0.3
CPSF1-201ENST00000526271 ASB14A6NK59 587 aa16.93■□□□□ 0.3
CPSF1-201ENST00000526271 TKFCQ3LXA3 575 aa16.93■□□□□ 0.3
CPSF1-201ENST00000526271 AKNAD1Q5T1N1 836 aa16.93■□□□□ 0.3
CPSF1-201ENST00000526271 BTNL9Q6UXG8 535 aa16.93■□□□□ 0.3
CPSF1-201ENST00000526271 TRMT13Q9NUP7 481 aaKnown RBP16.93■□□□□ 0.3
CPSF1-201ENST00000526271 STX8Q9UNK0 236 aa16.93■□□□□ 0.3
CPSF1-201ENST00000526271 MTMR7Q9Y216 660 aa16.93■□□□□ 0.3
CPSF1-201ENST00000526271 BRWD1Q9NSI6 2320 aa16.93■□□□□ 0.3
CPSF1-201ENST00000526271 RBM47A0AV96 593 aaKnown RBP16.92■□□□□ 0.3
CPSF1-201ENST00000526271 ICAM1P05362 532 aa16.92■□□□□ 0.3
CPSF1-201ENST00000526271 BAATQ14032 418 aaPredicted RBP16.92■□□□□ 0.3
CPSF1-201ENST00000526271 TTLL4Q14679 1199 aa16.92■□□□□ 0.3
CPSF1-201ENST00000526271 NSMFQ6X4W1 530 aa16.92■□□□□ 0.3
CPSF1-201ENST00000526271 SLC30A10Q6XR72 485 aa16.92■□□□□ 0.3
CPSF1-201ENST00000526271 GPATCH3Q96I76 525 aa16.92■□□□□ 0.3
CPSF1-201ENST00000526271 ALDH8A1Q9H2A2 487 aaPredicted RBP16.92■□□□□ 0.3
CPSF1-201ENST00000526271 ZNF287Q9HBT7 754 aa16.92■□□□□ 0.3
CPSF1-201ENST00000526271 A0A0D9SFI3 127 aa16.91■□□□□ 0.3
CPSF1-201ENST00000526271 EPOPA6NHQ4 379 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms