RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 NUDT19A8MXV4 375 aa3.89□□□□□ -1.79
CD44-216ENST00000525293 NUAK1O60285 661 aa3.89□□□□□ -1.79
CD44-216ENST00000525293 TBC1D8O95759 1140 aa3.89□□□□□ -1.79
CD44-216ENST00000525293 MSL3P1P0C860 447 aa3.89□□□□□ -1.79
CD44-216ENST00000525293 ZSCAN22P10073 491 aaPredicted RBP3.89□□□□□ -1.79
CD44-216ENST00000525293 LINC00310P59036 64 aa3.89□□□□□ -1.79
CD44-216ENST00000525293 YBX1P67809 324 aaKnown RBP3.89□□□□□ -1.79
CD44-216ENST00000525293 MVKQ03426 396 aa3.89□□□□□ -1.79
CD44-216ENST00000525293 RAB3GAP1Q15042 981 aa3.89□□□□□ -1.79
CD44-216ENST00000525293 DPY19L1Q2PZI1 675 aa3.89□□□□□ -1.79
CD44-216ENST00000525293 KRTAP19-4Q3LI73 84 aa3.89□□□□□ -1.79
CD44-216ENST00000525293 FBLN7Q53RD9 439 aa3.89□□□□□ -1.79
CD44-216ENST00000525293 VHLLQ6RSH7 139 aa3.89□□□□□ -1.79
CD44-216ENST00000525293 CYP2R1Q6VVX0 501 aa3.89□□□□□ -1.79
CD44-216ENST00000525293 LCNL1Q6ZST4 164 aa3.89□□□□□ -1.79
CD44-216ENST00000525293 VPS37DQ86XT2 251 aa3.89□□□□□ -1.79
CD44-216ENST00000525293 PTCHD1Q96NR3 888 aa3.89□□□□□ -1.79
CD44-216ENST00000525293 MCMBPQ9BTE3 642 aa3.89□□□□□ -1.79
CD44-216ENST00000525293 KRTAP4-5Q9BYR2 181 aa3.89□□□□□ -1.79
CD44-216ENST00000525293 CAPN10Q9HC96 672 aa3.89□□□□□ -1.79
CD44-216ENST00000525293 KLHL14Q9P2G3 628 aa3.89□□□□□ -1.79
CD44-216ENST00000525293 MBD1Q9UIS9 605 aaPredicted RBP3.89□□□□□ -1.79
CD44-216ENST00000525293 CNOT6Q9ULM6 557 aaKnown RBP3.89□□□□□ -1.79
CD44-216ENST00000525293 STRIP2Q9ULQ0 834 aa3.89□□□□□ -1.79
CD44-216ENST00000525293 MRVI1Q9Y6F6 885 aa3.89□□□□□ -1.79
CD44-216ENST00000525293 A0A1W2PQJ5 194 aa3.88□□□□□ -1.79
CD44-216ENST00000525293 STXBP3O00186 592 aa3.88□□□□□ -1.79
CD44-216ENST00000525293 HRKO00198 91 aa3.88□□□□□ -1.79
CD44-216ENST00000525293 ABLIM1O14639 778 aa3.88□□□□□ -1.79
CD44-216ENST00000525293 AURKAO14965 403 aa3.88□□□□□ -1.79
CD44-216ENST00000525293 OLFML2BQ68BL8 750 aa3.88□□□□□ -1.79
CD44-216ENST00000525293 SIAH1Q8IUQ4 282 aa3.88□□□□□ -1.79
CD44-216ENST00000525293 ARHGEF39Q8N4T4 335 aa3.88□□□□□ -1.79
CD44-216ENST00000525293 CNTD2Q9H8S5 307 aa3.88□□□□□ -1.79
CD44-216ENST00000525293 TNFRSF12AQ9NP84 129 aa3.88□□□□□ -1.79
CD44-216ENST00000525293 CGGBP1Q9UFW8 167 aaPredicted RBP3.88□□□□□ -1.79
CD44-216ENST00000525293 SUSD2Q9UGT4 822 aa3.88□□□□□ -1.79
CD44-216ENST00000525293 KCTD3Q9Y597 815 aa3.88□□□□□ -1.79
CD44-216ENST00000525293 ANKRD34BA5PLL1 514 aa3.87□□□□□ -1.79
CD44-216ENST00000525293 C2orf71A6NGG8 1288 aa3.87□□□□□ -1.79
CD44-216ENST00000525293 N4BP3O15049 544 aa3.87□□□□□ -1.79
CD44-216ENST00000525293 SMAD7O15105 426 aaKnown RBP3.87□□□□□ -1.79
CD44-216ENST00000525293 SSBP05455 408 aaKnown RBP eCLIP3.87□□□□□ -1.79
CD44-216ENST00000525293 TCF3P15923 654 aa3.87□□□□□ -1.79
CD44-216ENST00000525293 L1CAMP32004 1257 aa3.87□□□□□ -1.79
CD44-216ENST00000525293 SEPHS1P49903 392 aa3.87□□□□□ -1.79
CD44-216ENST00000525293 EPHB3P54753 998 aa3.87□□□□□ -1.79
CD44-216ENST00000525293 AMPD2Q01433 879 aa3.87□□□□□ -1.79
CD44-216ENST00000525293 TMEM62Q0P6H9 643 aa3.87□□□□□ -1.79
CD44-216ENST00000525293 SSPNQ14714 243 aa3.87□□□□□ -1.79
CD44-216ENST00000525293 EEF1DP3Q658K8 133 aa3.87□□□□□ -1.79
CD44-216ENST00000525293 RCSD1Q6JBY9 416 aa3.87□□□□□ -1.79
CD44-216ENST00000525293 RPTNQ6XPR3 784 aa3.87□□□□□ -1.79
CD44-216ENST00000525293 TMC6Q7Z403 805 aa3.87□□□□□ -1.79
CD44-216ENST00000525293 AMIGO3Q86WK7 504 aa3.87□□□□□ -1.79
CD44-216ENST00000525293 ZNF513Q8N8E2 541 aaPredicted RBP3.87□□□□□ -1.79
CD44-216ENST00000525293 PANK1Q8TE04 598 aa3.87□□□□□ -1.79
CD44-216ENST00000525293 RCC1LQ96I51 464 aaKnown RBP3.87□□□□□ -1.79
CD44-216ENST00000525293 APBA2Q99767 749 aa3.87□□□□□ -1.79
CD44-216ENST00000525293 KRTAP17-1Q9BYP8 105 aa3.87□□□□□ -1.79
CD44-216ENST00000525293 APEX2Q9UBZ4 518 aa3.87□□□□□ -1.79
CD44-216ENST00000525293 AKT3Q9Y243 479 aa3.87□□□□□ -1.79
CD44-216ENST00000525293 IRAK3Q9Y616 596 aa3.87□□□□□ -1.79
CD44-216ENST00000525293 KCNH1O95259 989 aa3.86□□□□□ -1.79
CD44-216ENST00000525293 PI3P19957 117 aa3.86□□□□□ -1.79
CD44-216ENST00000525293 TACR1P25103 407 aa3.86□□□□□ -1.79
CD44-216ENST00000525293 RBM25P49756 843 aaKnown RBP3.86□□□□□ -1.79
CD44-216ENST00000525293 CDR1P51861 262 aa3.86□□□□□ -1.79
CD44-216ENST00000525293 GNL2Q13823 731 aaKnown RBP3.86□□□□□ -1.79
CD44-216ENST00000525293 CBX2Q14781 532 aaPredicted RBP3.86□□□□□ -1.79
CD44-216ENST00000525293 ZNF385BQ569K4 471 aa3.86□□□□□ -1.79
CD44-216ENST00000525293 BICRALQ6AI39 1079 aa3.86□□□□□ -1.79
CD44-216ENST00000525293 LDHDQ86WU2 507 aa3.86□□□□□ -1.79
CD44-216ENST00000525293 CPNE8Q86YQ8 564 aa3.86□□□□□ -1.79
CD44-216ENST00000525293 MZB1Q8WU39 189 aa3.86□□□□□ -1.79
CD44-216ENST00000525293 PPP1R14AQ96A00 147 aa3.86□□□□□ -1.79
CD44-216ENST00000525293 SIGLEC10Q96LC7 697 aa3.86□□□□□ -1.79
CD44-216ENST00000525293 PDLIM7Q9NR12 457 aa3.86□□□□□ -1.79
CD44-216ENST00000525293 BACE2Q9Y5Z0 518 aa3.86□□□□□ -1.79
CD44-216ENST00000525293 NOP56O00567 594 aaKnown RBP3.85□□□□□ -1.79
CD44-216ENST00000525293 DBHP09172 617 aa3.85□□□□□ -1.79
CD44-216ENST00000525293 PAMP19021 973 aa3.85□□□□□ -1.79
CD44-216ENST00000525293 ETFBP38117 255 aa3.85□□□□□ -1.79
CD44-216ENST00000525293 MAPKAPK2P49137 400 aa3.85□□□□□ -1.79
CD44-216ENST00000525293 NCKAP1LP55160 1127 aa3.85□□□□□ -1.79
CD44-216ENST00000525293 CORO7P57737 925 aa3.85□□□□□ -1.79
CD44-216ENST00000525293 GRB10Q13322 594 aa3.85□□□□□ -1.79
CD44-216ENST00000525293 NR1I3Q14994 352 aa3.85□□□□□ -1.79
CD44-216ENST00000525293 NCAPHQ15003 741 aa3.85□□□□□ -1.79
CD44-216ENST00000525293 LARP1BQ659C4 914 aaKnown RBP3.85□□□□□ -1.79
CD44-216ENST00000525293 ZC3H14Q6PJT7 736 aaKnown RBP3.85□□□□□ -1.79
CD44-216ENST00000525293 PAQR3Q6TCH7 311 aa3.85□□□□□ -1.79
CD44-216ENST00000525293 C6orf15Q6UXA7 325 aaPredicted RBP3.85□□□□□ -1.79
CD44-216ENST00000525293 BVESQ8NE79 360 aa3.85□□□□□ -1.79
CD44-216ENST00000525293 NLGN2Q8NFZ4 835 aa3.85□□□□□ -1.79
CD44-216ENST00000525293 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.85□□□□□ -1.79
CD44-216ENST00000525293 LGR4Q9BXB1 951 aa3.85□□□□□ -1.79
CD44-216ENST00000525293 ACTR10Q9NZ32 417 aa3.85□□□□□ -1.79
CD44-216ENST00000525293 EMC9Q9Y3B6 208 aa3.85□□□□□ -1.79
CD44-216ENST00000525293 RWDD3Q9Y3V2 267 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms